{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,2]],"date-time":"2025-11-02T16:52:52Z","timestamp":1762102372616,"version":"3.37.3"},"reference-count":18,"publisher":"Oxford University Press (OUP)","issue":"W1","license":[{"start":{"date-parts":[[2019,5,11]],"date-time":"2019-05-11T00:00:00Z","timestamp":1557532800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2019,7,2]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Even in the era of next generation sequencing, in which bioinformatics tools abound, annotating transcriptomes and proteomes remains a challenge. This can have major implications for the reliability of studies based on these datasets. Therefore, quality assessment represents a crucial step prior to downstream analyses on novel transcriptomes and proteomes. DOGMA allows such a quality assessment to be carried out. The data of interest are evaluated based on a comparison with a core set of conserved protein domains and domain arrangements. Depending on the studied species, DOGMA offers precomputed core sets for different phylogenetic clades. We now developed a web server for the DOGMA software, offering a user-friendly, simple to use interface. Additionally, the server provides a graphical representation of the analysis results and their placement in comparison to publicly available data. The server is freely available under https:\/\/domainworld-services.uni-muenster.de\/dogma\/. Additionally, for large scale analyses the software can be downloaded free of charge from https:\/\/domainworld.uni-muenster.de.<\/jats:p>","DOI":"10.1093\/nar\/gkz366","type":"journal-article","created":{"date-parts":[[2019,4,30]],"date-time":"2019-04-30T01:21:19Z","timestamp":1556587279000},"page":"W507-W510","source":"Crossref","is-referenced-by-count":19,"title":["DOGMA: a web server for proteome and transcriptome quality assessment"],"prefix":"10.1093","volume":"47","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-2416-9842","authenticated-orcid":false,"given":"Carsten","family":"Kemena","sequence":"first","affiliation":[{"name":"Institute for Evolution and Biodiversity, Westf\u00e4lische Wilhelms-Universit\u00e4t M\u00fcnster, H\u00fcfferstrasse\u00a01, NRW, 48149\u00a0M\u00fcnster, Germany"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7203-2314","authenticated-orcid":false,"given":"Elias","family":"Dohmen","sequence":"additional","affiliation":[{"name":"Institute for Evolution and Biodiversity, Westf\u00e4lische Wilhelms-Universit\u00e4t M\u00fcnster, H\u00fcfferstrasse\u00a01, NRW, 48149\u00a0M\u00fcnster, Germany"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1826-3576","authenticated-orcid":false,"given":"Erich","family":"Bornberg-Bauer","sequence":"additional","affiliation":[{"name":"Institute for Evolution and Biodiversity, Westf\u00e4lische Wilhelms-Universit\u00e4t M\u00fcnster, H\u00fcfferstrasse\u00a01, NRW, 48149\u00a0M\u00fcnster, Germany"}]}],"member":"286","published-online":{"date-parts":[[2019,5,11]]},"reference":[{"key":"2019062808124868100_B1","doi-asserted-by":"crossref","first-page":"1513","DOI":"10.1073\/pnas.1017351108","article-title":"High-quality draft assemblies of mammalian genomes from massively parallel sequence data","volume":"108","author":"Gnerre","year":"2011","journal-title":"Proc. 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