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To facilitate the development of the interactome and promote understanding of the biological functions and molecular mechanisms of RNA, we updated RAID v2.0 to RNAInter (RNA Interactome Database), a repository for RNA-associated interactions that is freely accessible at http:\/\/www.rna-society.org\/rnainter\/ or http:\/\/www.rna-society.org\/raid\/. Compared to RAID v2.0, new features in RNAInter include (i) 8-fold more interaction data and 94 additional species; (ii) more definite annotations organized, including RNA editing\/localization\/modification\/structure and homology interaction; (iii) advanced functions including fuzzy\/batch search, interaction network and RNA dynamic expression and (iv) four embedded RNA interactome tools: RIscoper, IntaRNA, PRIdictor and DeepBind. Consequently, RNAInter contains &amp;gt;41 million RNA-associated interaction entries, involving more than 450 thousand unique molecules, including RNA, protein, DNA and compound. Overall, RNAInter provides a comprehensive RNA interactome resource for researchers and paves the way to investigate the regulatory landscape of cellular RNAs.<\/jats:p>","DOI":"10.1093\/nar\/gkz804","type":"journal-article","created":{"date-parts":[[2019,9,10]],"date-time":"2019-09-10T11:40:16Z","timestamp":1568115616000},"page":"D189-D197","source":"Crossref","is-referenced-by-count":197,"title":["RNAInter in 2020: RNA interactome repository with increased coverage and annotation"],"prefix":"10.1093","volume":"48","author":[{"given":"Yunqing","family":"Lin","sequence":"first","affiliation":[{"name":"Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou 510515, China"},{"name":"College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tianyuan","family":"Liu","sequence":"additional","affiliation":[{"name":"Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou 510515, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tianyu","family":"Cui","sequence":"additional","affiliation":[{"name":"Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou 510515, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Zhao","family":"Wang","sequence":"additional","affiliation":[{"name":"College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yuncong","family":"Zhang","sequence":"additional","affiliation":[{"name":"College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Puwen","family":"Tan","sequence":"additional","affiliation":[{"name":"Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou 510515, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yan","family":"Huang","sequence":"additional","affiliation":[{"name":"Shunde Hospital, Southern Medical University (The First People's Hospital of Shunde), Foshan 528308, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jia","family":"Yu","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Medical Molecular Biology, Department of Biochemistry & Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences (CAMS) & Peking Union Medical College (PUMC), Beijing 100730, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7949-5285","authenticated-orcid":false,"given":"Dong","family":"Wang","sequence":"additional","affiliation":[{"name":"Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou 510515, China"},{"name":"Shunde Hospital, Southern Medical University (The First People's Hospital of Shunde), Foshan 528308, China"},{"name":"Dermatology Hospital, Southern Medical University, Guangzhou 510091, China"},{"name":"Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu 611731, China"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2019,9,17]]},"reference":[{"key":"2020010521380691700_B1","doi-asserted-by":"crossref","first-page":"610","DOI":"10.1016\/j.molcel.2009.08.020","article-title":"miR-24 Inhibits cell proliferation by targeting E2F2, MYC, and other cell-cycle genes via binding to \u201cseedless\u201d 3\u2032UTR microRNA recognition elements","volume":"35","author":"Lal","year":"2009","journal-title":"Mol. 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