{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,5]],"date-time":"2026-04-05T09:47:51Z","timestamp":1775382471141,"version":"3.50.1"},"reference-count":38,"publisher":"Oxford University Press (OUP)","license":[{"start":{"date-parts":[[2019,11,4]],"date-time":"2019-11-04T00:00:00Z","timestamp":1572825600000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100004794","name":"CNRS","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100004794","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001665","name":"Agence Nationale de la Recherche","doi-asserted-by":"publisher","award":["ANR-13-BSV2-0011-01"],"award-info":[{"award-number":["ANR-13-BSV2-0011-01"]}],"id":[{"id":"10.13039\/501100001665","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001665","name":"Agence Nationale de la Recherche","doi-asserted-by":"publisher","award":["ANR-10-BINF-01-03"],"award-info":[{"award-number":["ANR-10-BINF-01-03"]}],"id":[{"id":"10.13039\/501100001665","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001665","name":"Agence Nationale de la Recherche","doi-asserted-by":"publisher","award":["ANR-10-LABX-54"],"award-info":[{"award-number":["ANR-10-LABX-54"]}],"id":[{"id":"10.13039\/501100001665","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001665","name":"Agence Nationale de la Recherche","doi-asserted-by":"publisher","award":["ANR-10-IDEX-0001-02"],"award-info":[{"award-number":["ANR-10-IDEX-0001-02"]}],"id":[{"id":"10.13039\/501100001665","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001665","name":"Agence Nationale de la Recherche","doi-asserted-by":"publisher","award":["ANR-16-CE92-0019"],"award-info":[{"award-number":["ANR-16-CE92-0019"]}],"id":[{"id":"10.13039\/501100001665","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Institut Fran\u00e7ais de Bioinformatique"},{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001700","name":"MEXT","doi-asserted-by":"publisher","award":["221S0002"],"award-info":[{"award-number":["221S0002"]}],"id":[{"id":"10.13039\/501100001700","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001691","name":"JSPS","doi-asserted-by":"publisher","award":["24870019"],"award-info":[{"award-number":["24870019"]}],"id":[{"id":"10.13039\/501100001691","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001691","name":"JSPS","doi-asserted-by":"publisher","award":["26840079"],"award-info":[{"award-number":["26840079"]}],"id":[{"id":"10.13039\/501100001691","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001691","name":"JSPS","doi-asserted-by":"publisher","award":["18K06256"],"award-info":[{"award-number":["18K06256"]}],"id":[{"id":"10.13039\/501100001691","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001691","name":"JSPS","doi-asserted-by":"publisher","award":["26650079"],"award-info":[{"award-number":["26650079"]}],"id":[{"id":"10.13039\/501100001691","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001691","name":"JSPS","doi-asserted-by":"publisher","award":["15H04377"],"award-info":[{"award-number":["15H04377"]}],"id":[{"id":"10.13039\/501100001691","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001691","name":"JSPS","doi-asserted-by":"publisher","award":["16K14735"],"award-info":[{"award-number":["16K14735"]}],"id":[{"id":"10.13039\/501100001691","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001691","name":"JSPS","doi-asserted-by":"publisher","award":["17KT0023"],"award-info":[{"award-number":["17KT0023"]}],"id":[{"id":"10.13039\/501100001691","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001691","name":"JSPS","doi-asserted-by":"publisher","award":["19H03234"],"award-info":[{"award-number":["19H03234"]}],"id":[{"id":"10.13039\/501100001691","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100003844","name":"Inamori Foundation","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100003844","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Kato Memorial Research Foundation"},{"DOI":"10.13039\/100008608","name":"Sumitomo Foundation","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100008608","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100008695","name":"Japan Foundation for Applied Enzymology","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100008695","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"abstract":"<jats:title>Abstract<\/jats:title><jats:p>ANISEED (https:\/\/www.aniseed.cnrs.fr) is the main model organism database for the worldwide community of scientists working on tunicates, the vertebrate sister-group. Information provided for each species includes functionally-annotated gene and transcript models with orthology relationships within tunicates, and with echinoderms, cephalochordates and vertebrates. Beyond genes the system describes other genetic elements, including repeated elements and cis-regulatory modules. Gene expression profiles for several thousand genes are formalized in both wild-type and experimentally-manipulated conditions, using formal anatomical ontologies. These data can be explored through three complementary types of browsers, each offering a different view-point. A developmental browser summarizes the information in a gene- or territory-centric manner. Advanced genomic browsers integrate the genetic features surrounding genes or gene sets within a species. A Genomicus synteny browser explores the conservation of local gene order across deuterostome. This new release covers an extended taxonomic range of 14 species, including for the first time a non-ascidian species, the appendicularian Oikopleura dioica. Functional annotations, provided for each species, were enhanced through a combination of manual curation of gene models and the development of an improved orthology detection pipeline. Finally, gene expression profiles and anatomical territories can be explored in 4D online through the newly developed Morphonet morphogenetic browser.<\/jats:p>","DOI":"10.1093\/nar\/gkz955","type":"journal-article","created":{"date-parts":[[2019,10,11]],"date-time":"2019-10-11T19:30:51Z","timestamp":1570822251000},"source":"Crossref","is-referenced-by-count":37,"title":["ANISEED 2019: 4D exploration of genetic data for an extended range of tunicates"],"prefix":"10.1093","author":[{"given":"Justine","family":"Dardaillon","sequence":"first","affiliation":[{"name":"CRBM, Universit\u00e9 de Montpellier, CNRS, Montpellier, France"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3152-1194","authenticated-orcid":false,"given":"Delphine","family":"Dauga","sequence":"additional","affiliation":[{"name":"Bioself Communication; 28 rue de la Biblioth\u00e8que, F-13001 Marseille, France"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6667-3297","authenticated-orcid":false,"given":"Paul","family":"Simion","sequence":"additional","affiliation":[{"name":"ISEM, Universit\u00e9 de Montpellier, CNRS, IRD, EPHE, Montpellier, France"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2787-0885","authenticated-orcid":false,"given":"Emmanuel","family":"Faure","sequence":"additional","affiliation":[{"name":"Laboratoire d\u2019Informatique de Robotique et de Micro\u00e9lectronique de Montpellier (LIRMM), Universit\u00e9 de Montpellier, CNRS, Montpellier, France"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9739-6333","authenticated-orcid":false,"given":"Takeshi A","family":"Onuma","sequence":"additional","affiliation":[{"name":"Department of Biological Sciences, Graduate School of Science, Osaka University, 1-1 Machikaneyama-cho, Toyonaka, Osaka 560-0043, Japan"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0404-7212","authenticated-orcid":false,"given":"Melissa B","family":"DeBiasse","sequence":"additional","affiliation":[{"name":"Whitney Laboratory for Marine Bioscience, 9505 Ocean Shore Boulevard, St. Augustine, FL 32080, USA"},{"name":"Department of Biology, University of Florida, 220 Bartram Hall, Gainesville, FL\u00a032611, USA"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7032-5650","authenticated-orcid":false,"given":"Alexandra","family":"Louis","sequence":"additional","affiliation":[{"name":"DYOGEN, IBENS, D\u00e9partement de Biologie, Ecole Normale Sup\u00e9rieure, CNRS, Inserm, PSL Research University, F-75005\u00a0Paris, France"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3151-0962","authenticated-orcid":false,"given":"Kazuhiro R","family":"Nitta","sequence":"additional","affiliation":[{"name":"IBDM, Universit\u00e9 Aix-Marseille, CNRS, Marseille, France"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6821-2427","authenticated-orcid":false,"given":"Magali","family":"Naville","sequence":"additional","affiliation":[{"name":"Institut de G\u00e9nomique Fonctionnelle de Lyon, Universit\u00e9 de Lyon, Ecole Normale Sup\u00e9rieure de Lyon, Universit\u00e9 Claude Bernard Lyon 1, CNRS; 46 all\u00e9e d\u2019Italie, F-69364 Lyon, France"}]},{"given":"Lydia","family":"Besnardeau","sequence":"additional","affiliation":[{"name":"Laboratoire de Biologie du D\u00e9veloppement de Villefranche-sur-mer (LBDV), Sorbonne Universit\u00e9s, Universit\u00e9 Pierre-et-Marie-Curie, CNRS; Quai de la Darse, F-06234 Villefranche-sur-Mer Cedex, France"}]},{"given":"Wendy","family":"Reeves","sequence":"additional","affiliation":[{"name":"Division of Biology, Kansas State University, Manhattan, KS 66506, USA"}]},{"given":"Kai","family":"Wang","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Cell Biology, Shanghai Key Laboratory of Molecular Andrology, CAS Center for Excellence in Molecular Cell Science, Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, 320 Yueyang Road, Shanghai 200031, China"}]},{"given":"Marie","family":"Fagotto","sequence":"additional","affiliation":[{"name":"Universit\u00e9 de Montpellier, Montpellier, France"}]},{"given":"Marion","family":"Gu\u00e9roult-Bellone","sequence":"additional","affiliation":[{"name":"Bioself Communication; 28 rue de la Biblioth\u00e8que, F-13001 Marseille, France"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9464-180X","authenticated-orcid":false,"given":"Shigeki","family":"Fujiwara","sequence":"additional","affiliation":[{"name":"Department of Chemistry and Biotechnology, Faculty of Science and Technology, Kochi University, Kochi-shi, Kochi, Japan"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8444-0630","authenticated-orcid":false,"given":"R\u00e9mi","family":"Dumollard","sequence":"additional","affiliation":[{"name":"Laboratoire de Biologie du D\u00e9veloppement de Villefranche-sur-mer (LBDV), Sorbonne Universit\u00e9s, Universit\u00e9 Pierre-et-Marie-Curie, CNRS; Quai de la Darse, F-06234 Villefranche-sur-Mer Cedex, France"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0752-6537","authenticated-orcid":false,"given":"Michael","family":"Veeman","sequence":"additional","affiliation":[{"name":"Division of Biology, Kansas State University, Manhattan, KS 66506, USA"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3406-892X","authenticated-orcid":false,"given":"Jean-Nicolas","family":"Volff","sequence":"additional","affiliation":[{"name":"Institut de G\u00e9nomique Fonctionnelle de Lyon, Universit\u00e9 de Lyon, Ecole Normale Sup\u00e9rieure de Lyon, Universit\u00e9 Claude Bernard Lyon 1, CNRS; 46 all\u00e9e d\u2019Italie, F-69364 Lyon, France"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8209-173X","authenticated-orcid":false,"given":"Hugues","family":"Roest\u00a0Crollius","sequence":"additional","affiliation":[{"name":"DYOGEN, IBENS, D\u00e9partement de Biologie, Ecole Normale Sup\u00e9rieure, CNRS, Inserm, PSL Research University, F-75005\u00a0Paris, France"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5286-647X","authenticated-orcid":false,"given":"Emmanuel","family":"Douzery","sequence":"additional","affiliation":[{"name":"ISEM, Universit\u00e9 de Montpellier, CNRS, IRD, EPHE, Montpellier, France"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5478-0522","authenticated-orcid":false,"given":"Joseph F","family":"Ryan","sequence":"additional","affiliation":[{"name":"Whitney Laboratory for Marine Bioscience, 9505 Ocean Shore Boulevard, St. Augustine, FL 32080, USA"},{"name":"Department of Biology, University of Florida, 220 Bartram Hall, Gainesville, FL\u00a032611, USA"}]},{"given":"Bradley","family":"Davidson","sequence":"additional","affiliation":[{"name":"Department of Biology, Swarthmore College, Swarthmore, PA\u00a019081, USA"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7249-1668","authenticated-orcid":false,"given":"Hiroki","family":"Nishida","sequence":"additional","affiliation":[{"name":"Department of Biological Sciences, Graduate School of Science, Osaka University, 1-1 Machikaneyama-cho, Toyonaka, Osaka 560-0043, Japan"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7247-6460","authenticated-orcid":false,"given":"Christelle","family":"Dantec","sequence":"additional","affiliation":[{"name":"CRBM, Universit\u00e9 de Montpellier, CNRS, Montpellier, France"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4925-2009","authenticated-orcid":false,"given":"Patrick","family":"Lemaire","sequence":"additional","affiliation":[{"name":"CRBM, Universit\u00e9 de Montpellier, CNRS, Montpellier, France"}]}],"member":"286","published-online":{"date-parts":[[2019,11,4]]},"reference":[{"key":"2019110404160584600_B1","doi-asserted-by":"crossref","first-page":"965","DOI":"10.1038\/nature04336","article-title":"Tunicates and not cephalochordates are the closest living relatives of vertebrates","volume":"439","author":"Delsuc","year":"2006","journal-title":"Nature"},{"key":"2019110404160584600_B2","doi-asserted-by":"crossref","first-page":"592","DOI":"10.1002\/dvg.20450","article-title":"Additional molecular support for the new chordate phylogeny","volume":"46","author":"Delsuc","year":"2008","journal-title":"Genes"},{"key":"2019110404160584600_B3","doi-asserted-by":"crossref","first-page":"166","DOI":"10.1016\/j.ympev.2018.01.005","article-title":"Phylogenomics offers resolution of major tunicate relationships","volume":"121","author":"Kocot","year":"2018","journal-title":"Mol. Phylogenet. Evol."},{"key":"2019110404160584600_B4","doi-asserted-by":"crossref","first-page":"39","DOI":"10.1186\/s12915-018-0499-2","article-title":"A phylogenomic framework and timescale for comparative studies of tunicates","volume":"16","author":"Delsuc","year":"2018","journal-title":"BMC Biol."},{"key":"2019110404160584600_B5","doi-asserted-by":"crossref","first-page":"371","DOI":"10.1038\/nature15758","article-title":"Migratory neuronal progenitors arise from the neural plate borders in tunicates","volume":"527","author":"Stolfi","year":"2015","journal-title":"Nature"},{"key":"2019110404160584600_B6","doi-asserted-by":"crossref","first-page":"119","DOI":"10.1016\/j.gde.2015.02.008","article-title":"Regulation and evolution of cardiopharyngeal cell identity and behavior: insights from simple chordates","volume":"32","author":"Kaplan","year":"2015","journal-title":"Curr. Opin. Genet. Dev."},{"key":"2019110404160584600_B7","doi-asserted-by":"crossref","first-page":"565","DOI":"10.1126\/science.1190181","article-title":"Early chordate origins of the vertebrate second heart field","volume":"329","author":"Stolfi","year":"2010","journal-title":"Science"},{"key":"2019110404160584600_B8","doi-asserted-by":"crossref","first-page":"589","DOI":"10.1242\/dev.124.3.589","article-title":"Characterization of a notochord-specific enhancer from the Brachyury promoter region of the ascidian, Ciona intestinalis","volume":"124","author":"Corbo","year":"1997","journal-title":"Development"},{"key":"2019110404160584600_B9","doi-asserted-by":"crossref","first-page":"1183","DOI":"10.1126\/science.1123404","article-title":"Regulatory blueprint for a chordate embryo","volume":"312","author":"Imai","year":"2006","journal-title":"Science"},{"key":"2019110404160584600_B10","doi-asserted-by":"crossref","first-page":"349","DOI":"10.1038\/s41586-019-1385-y","article-title":"Comprehensive single-cell transcriptome lineages of a proto-vertebrate","volume":"571","author":"Cao","year":"2019","journal-title":"Nature"},{"key":"2019110404160584600_B11","doi-asserted-by":"crossref","first-page":"e03728","DOI":"10.7554\/eLife.03728","article-title":"Divergent mechanisms regulate conserved cardiopharyngeal development and gene expression in distantly related ascidians","volume":"3","author":"Stolfi","year":"2014","journal-title":"eLife"},{"key":"2019110404160584600_B12","first-page":"1643","article-title":"Divergent mechanisms specify chordate motoneurons: evidence from ascidians","volume":"138","author":"Hudson","year":"2011","journal-title":"Dev. Camb. Engl."},{"key":"2019110404160584600_B13","doi-asserted-by":"crossref","first-page":"13","DOI":"10.1186\/s13227-019-0125-6","article-title":"Regulation and evolution of muscle development in tunicates","volume":"10","author":"Razy-Krajka","year":"2019","journal-title":"EvoDevo"},{"key":"2019110404160584600_B14","doi-asserted-by":"crossref","first-page":"18","DOI":"10.1186\/s13227-018-0107-0","article-title":"Developmental system drift in motor ganglion patterning between distantly related tunicates","volume":"9","author":"Lowe","year":"2018","journal-title":"Evodevo."},{"key":"2019110404160584600_B15","doi-asserted-by":"crossref","first-page":"101","DOI":"10.1016\/j.gde.2016.06.001","article-title":"Colonial ascidians as model organisms for the study of germ cells, fertility, whole body regeneration, vascular biology and aging","volume":"39","author":"Kassmer","year":"2016","journal-title":"Curr. Opin. Genet. Dev."},{"key":"2019110404160584600_B16","doi-asserted-by":"crossref","first-page":"95","DOI":"10.1007\/978-1-4020-8274-0_6","article-title":"Regeneration and stem cells in ascidians","volume-title":"Stem Cells","author":"Tiozzo","year":"2008"},{"key":"2019110404160584600_B17","doi-asserted-by":"crossref","first-page":"114","DOI":"10.1186\/s12864-016-2435-6","article-title":"Uncovering the pathways underlying whole body regeneration in a chordate model, Botrylloides leachi using de novo transcriptome analysis","volume":"17","author":"Zondag","year":"2016","journal-title":"BMC Genomics"},{"key":"2019110404160584600_B18","first-page":"435","article-title":"Response of Marine Ecosystems to Global Change: Ecological Impact of Appendicularians","volume-title":"\u00c9ditions Scientifiques","author":"Gorsky","year":"2005"},{"key":"2019110404160584600_B19","doi-asserted-by":"crossref","first-page":"33","DOI":"10.3391\/mbi.2016.7.1.05","article-title":"Quantifying the ecological impact of invasive tunicates to shallow coastal water systems","volume":"7","author":"Colarusso","year":"2016","journal-title":"Manag. Biol. Invasions"},{"key":"2019110404160584600_B20","doi-asserted-by":"crossref","first-page":"16717","DOI":"10.1038\/srep16717","article-title":"Molecular basis of canalization in an ascidian species complex adapted to different thermal conditions","volume":"5","author":"Sato","year":"2015","journal-title":"Sci. Rep."},{"key":"2019110404160584600_B21","doi-asserted-by":"crossref","first-page":"618","DOI":"10.1016\/j.marpolbul.2018.12.013","article-title":"Using solitary ascidians to assess microplastic and phthalate plasticizers pollution among marine biota: a case study of the Eastern Mediterranean and Red Sea","volume":"138","author":"Vered","year":"2019","journal-title":"Mar. Pollut. Bull."},{"key":"2019110404160584600_B22","doi-asserted-by":"crossref","first-page":"1459","DOI":"10.1101\/gr.108175.110","article-title":"The ANISEED database: digital representation, formalization, and elucidation of a chordate developmental program","volume":"20","author":"Tassy","year":"2010","journal-title":"Genome Res."},{"key":"2019110404160584600_B23","doi-asserted-by":"crossref","first-page":"D808","DOI":"10.1093\/nar\/gkv966","article-title":"ANISEED 2015: a digital framework for the comparative developmental biology of ascidians","volume":"44","author":"Brozovic","year":"2016","journal-title":"Nucleic Acids Res."},{"key":"2019110404160584600_B24","doi-asserted-by":"crossref","first-page":"D718","DOI":"10.1093\/nar\/gkx1108","article-title":"ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets","volume":"46","author":"Brozovic","year":"2018","journal-title":"Nucleic Acids Res."},{"key":"2019110404160584600_B25","doi-asserted-by":"crossref","first-page":"D816","DOI":"10.1093\/nar\/gkx1003","article-title":"Genomicus 2018: karyotype evolutionary trees and on-the-fly synteny computing","volume":"46","author":"Nguyen","year":"2018","journal-title":"Nucleic Acids Res."},{"key":"2019110404160584600_B26","doi-asserted-by":"crossref","first-page":"328","DOI":"10.1016\/0012-1606(91)90131-L","article-title":"An evolutionary change in the muscle lineage of an anural ascidian embryo is restored by interspecific hybridization with a urodele ascidian","volume":"145","author":"Jeffery","year":"1991","journal-title":"Dev. Biol."},{"key":"2019110404160584600_B27","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1038\/s41598-018-23749-w","article-title":"De novo draft assembly of the Botrylloides leachii genome provides further insight into tunicate evolution","volume":"8","author":"Blanchoud","year":"2018","journal-title":"Sci. Rep."},{"key":"2019110404160584600_B28","doi-asserted-by":"crossref","first-page":"337","DOI":"10.1007\/978-3-319-92486-1_16","article-title":"Whole-Body regeneration in the colonial tunicate botrylloides leachii","volume-title":"Marine Organisms as Model Systems in Biology and Medicine, Results and Problems in Cell Differentiation","author":"Blanchoud","year":"2018"},{"issue":"Suppl. 1","key":"2019110404160584600_B29","doi-asserted-by":"crossref","first-page":"S239","DOI":"10.1111\/j.1440-169X.2008.01035.x","article-title":"Development of the appendicularian Oikopleura dioica: culture, genome, and cell lineages","volume":"50","author":"Nishida","year":"2008","journal-title":"Dev. Growth Differ."},{"key":"2019110404160584600_B30","doi-asserted-by":"crossref","first-page":"116","DOI":"10.1186\/1471-2105-12-116","article-title":"Ultra-fast sequence clustering from similarity networks with SiLiX","volume":"12","author":"Miele","year":"2011","journal-title":"BMC Bioinformatics"},{"key":"2019110404160584600_B31","doi-asserted-by":"crossref","first-page":"1213","DOI":"10.1038\/nmeth.2688","article-title":"Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position","volume":"10","author":"Buenrostro","year":"2013","journal-title":"Nat. Methods"},{"key":"2019110404160584600_B32","doi-asserted-by":"crossref","first-page":"375","DOI":"10.1038\/nmeth.2440","article-title":"Exploring long-range genome interactions using the WashU Epigenome Browser","volume":"10","author":"Zhou","year":"2013","journal-title":"Nat. Methods"},{"key":"2019110404160584600_B33","doi-asserted-by":"crossref","first-page":"71","DOI":"10.1016\/j.ydbio.2019.01.003","article-title":"Evolution of embryonic cis-regulatory landscapes between divergent Phallusia and Ciona ascidians","volume":"448","author":"Madgwick","year":"2019","journal-title":"Dev. Biol."},{"key":"2019110404160584600_B34","doi-asserted-by":"crossref","first-page":"487","DOI":"10.1007\/978-1-4939-9624-7_23","article-title":"High-Throughput protein production combined with High- Throughput SELEX identifies an extensive Atlas of ciona robusta transcription factor DNA-binding specificities","volume-title":"High-Throughput Protein Production and Purification: Methods and Protocols, Methods in Molecular Biology","author":"Nitta","year":"2019"},{"key":"2019110404160584600_B35","doi-asserted-by":"crossref","first-page":"615","DOI":"10.1016\/S0092-8674(03)00928-0","article-title":"Neural tissue in ascidian embryos is induced by FGF9\/16\/20, acting via a combination of maternal GATA and Ets transcription factors","volume":"115","author":"Bertrand","year":"2003","journal-title":"Cell"},{"key":"2019110404160584600_B36","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1038\/s41467-019-10668-1","article-title":"MorphoNet: an interactive online morphological browser to explore complex multi-scale data","volume":"10","author":"Leggio","year":"2019","journal-title":"Nat. Commun."},{"key":"2019110404160584600_B37","doi-asserted-by":"crossref","first-page":"e96434","DOI":"10.1371\/journal.pone.0096434","article-title":"Ontology for the asexual development and anatomy of the colonial chordate botryllus schlosseri","volume":"9","author":"Manni","year":"2014","journal-title":"PLoS One"},{"key":"2019110404160584600_B38","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1002\/dvg.22822","article-title":"Guidelines for the nomenclature of genetic elements in tunicate genomes","volume":"53","author":"Stolfi","year":"2015","journal-title":"Genesis"}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/advance-article-pdf\/doi\/10.1093\/nar\/gkz955\/30347042\/gkz955.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"http:\/\/academic.oup.com\/nar\/advance-article-pdf\/doi\/10.1093\/nar\/gkz955\/30347042\/gkz955.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,10,1]],"date-time":"2022-10-01T14:34:41Z","timestamp":1664634881000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/nar\/advance-article\/doi\/10.1093\/nar\/gkz955\/5611675"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019,11,4]]},"references-count":38,"URL":"https:\/\/doi.org\/10.1093\/nar\/gkz955","relation":{},"ISSN":["0305-1048","1362-4962"],"issn-type":[{"value":"0305-1048","type":"print"},{"value":"1362-4962","type":"electronic"}],"subject":[],"published":{"date-parts":[[2019,11,4]]},"article-number":"gkz955"}}