{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,13]],"date-time":"2026-10-13T23:29:23Z","timestamp":1791934163826,"version":"4.3.4"},"reference-count":18,"publisher":"Oxford University Press (OUP)","issue":"1","license":[{"start":{"date-parts":[[2026,1,21]],"date-time":"2026-01-21T00:00:00Z","timestamp":1768953600000},"content-version":"vor","delay-in-days":20,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"National Institute of Allergy and Infectious Diseases, National Institutes of Health"},{"DOI":"10.13039\/100000016","name":"Department of Health and Human Services","doi-asserted-by":"publisher","award":["5U54TW012056-05"],"award-info":[{"award-number":["5U54TW012056-05"]}],"id":[{"id":"10.13039\/100000016","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2026,1,7]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:sec>\n                    <jats:title>Summary<\/jats:title>\n                    <jats:p>cAMRah is a curated workflow designed to predict antimicrobial resistance (AMR) genes in microbial genomes, either in the cloud or on any personal computer running Docker containers. Numerous AMR gene-finding packages exist, each utilizing different algorithms and prediction methods. cAMRah adopts a consensus-based approach to AMR prediction, recognizing that no single tool can identify all AMR genes. It integrates and runs six AMR-finder tools and databases (with plans for future expansion), scores the AMR predictions, maps all results to CDS coordinates and harmonizes the annotation, resulting in consistent gene symbols and ontologies.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Availability and implementation<\/jats:title>\n                    <jats:p>Source code, demo data and detailed documentation are freely available at https:\/\/github.com\/JCVenterInstitute\/CAMRA.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1093\/bioadv\/vbag017","type":"journal-article","created":{"date-parts":[[2026,1,17]],"date-time":"2026-01-17T12:33:16Z","timestamp":1768653196000},"source":"Crossref","is-referenced-by-count":1,"title":["cAMRah: a scalable and portable workflow for harmonized antimicrobial resistance gene prediction from bacterial genomes"],"prefix":"10.1093","volume":"6","author":[{"given":"Daniella L","family":"Matute","sequence":"first","affiliation":[{"name":"J. Craig Venter Institute , Rockville, MD 20850,","place":["United States"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Thomas H","family":"Clarke","sequence":"additional","affiliation":[{"name":"J. Craig Venter Institute , Rockville, MD 20850,","place":["United States"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Andrew R","family":"LaPointe","sequence":"additional","affiliation":[{"name":"J. Craig Venter Institute , Rockville, MD 20850,","place":["United States"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Indresh","family":"Singh","sequence":"additional","affiliation":[{"name":"J. Craig Venter Institute , Rockville, MD 20850,","place":["United States"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4323-7668","authenticated-orcid":false,"given":"Derrick E","family":"Fouts","sequence":"additional","affiliation":[{"name":"J. 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