{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,18]],"date-time":"2026-09-18T13:06:28Z","timestamp":1789736788971,"version":"4.0.1"},"reference-count":16,"publisher":"Oxford University Press (OUP)","issue":"1","license":[{"start":{"date-parts":[[2026,9,3]],"date-time":"2026-09-03T00:00:00Z","timestamp":1788393600000},"content-version":"vor","delay-in-days":245,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"PRISM"},{"name":"Semiconductor Research Corporation","id":[{"id":"https:\/\/ror.org\/047z4n946","id-type":"ROR","asserted-by":"crossref"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2026,1,7]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:sec>\n                    <jats:title>Motivation<\/jats:title>\n                    <jats:p>Viral surveillance from mixed samples (e.g. wastewater) has become critical in public health efforts to track and contain pathogens. However, existing open-source bioinformatics tools for viral consensus sequence generation are optimized for individual viruses (rather than multiple potential viruses of interest).<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Results<\/jats:title>\n                    <jats:p>MultiVirusConsensus (MVC) is an accurate and efficient open-source pipeline for identification and consensus sequence generation of multiple viruses from mixed samples. It utilizes the memory-efficient ViralConsensus tool to simultaneously perform consensus sequence calling on all viruses of interest (1) completely in parallel, and (2) by piping datastreams between tools without writing\/reading intermediate files (thus eliminating slowdowns related to slow disk accesses).<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Availability<\/jats:title>\n                    <jats:p>MultiVirusConsensus (MVC) is freely available as an open-source software project at: https:\/\/github.com\/niemasd\/MultiVirusConsensus<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1093\/bioadv\/vbag256","type":"journal-article","created":{"date-parts":[[2026,9,3]],"date-time":"2026-09-03T06:07:01Z","timestamp":1788415621000},"source":"Crossref","is-referenced-by-count":0,"title":["MultiVirusConsensus: an accurate and efficient open-source pipeline for identification and consensus sequence generation of multiple 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