{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,18]],"date-time":"2025-11-18T15:41:11Z","timestamp":1763480471194,"version":"3.41.2"},"reference-count":45,"publisher":"Oxford University Press (OUP)","issue":"3","license":[{"start":{"date-parts":[[2021,6,15]],"date-time":"2021-06-15T00:00:00Z","timestamp":1623715200000},"content-version":"vor","delay-in-days":14,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"funder":[{"name":"European Union\u2019s Horizon 2020 Research and Innovation"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2021,6,25]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Candida subhashii belongs to the CUG-Ser clade, a group of phylogenetically closely related yeast species that includes some human opportunistic pathogens, such as Candida albicans. Despite being present in the environment, C. subhashii was initially described as the causative agent of a case of peritonitis. Considering the relevance of whole-genome sequencing and analysis for our understanding of genome evolution and pathogenicity, we sequenced, assembled and annotated the genome of C. subhashii type strain. Our results show that C. subhashii presents a highly heterozygous genome and other signatures that point to a hybrid ancestry. The presence of functional pathways for assimilation of hydroxyaromatic compounds goes in line with the affiliation of this yeast with soil microbial communities involved in lignin decomposition. Furthermore, we observed that different clones of this strain may present circular or linear mitochondrial DNA. Re-sequencing and comparison of strains with differential mitochondrial genome topology revealed five candidate genes potentially associated with this conformational change: MSK1, SSZ1, ALG5, MRPL9 and OYE32.<\/jats:p>","DOI":"10.1093\/dnares\/dsab006","type":"journal-article","created":{"date-parts":[[2021,6,14]],"date-time":"2021-06-14T19:12:22Z","timestamp":1623697942000},"source":"Crossref","is-referenced-by-count":17,"title":["Genome analysis of <i>Candida subhashii<\/i> reveals its hybrid nature and dual mitochondrial genome conformations"],"prefix":"10.1093","volume":"28","author":[{"given":"Ver\u00f3nica","family":"Mix\u00e3o","sequence":"first","affiliation":[{"name":"Life Sciences Department, Barcelona Supercomputing Center (BSC) , Jordi Girona, 29, 08034 Barcelona, Spain"},{"name":"Mechanisms of Disease Department, Institute for Research in Biomedicine (IRB) , Barcelona, Spain"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Eva","family":"Heged\u0171sov\u00e1","sequence":"additional","affiliation":[{"name":"Faculty of Natural Sciences, Department of Biochemistry, Comenius University in Bratislava , Ilkovi\u010dova 6, 842 15 Bratislava, Slovak Republic"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ester","family":"Saus","sequence":"additional","affiliation":[{"name":"Life Sciences Department, Barcelona Supercomputing Center (BSC) , Jordi Girona, 29, 08034 Barcelona, Spain"},{"name":"Mechanisms of Disease Department, Institute for Research in Biomedicine (IRB) , Barcelona, Spain"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Leszek P","family":"Pryszcz","sequence":"additional","affiliation":[{"name":"Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology , Dr. Aiguader 88, Barcelona 08003, Spain"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Andrea","family":"Cillingov\u00e1","sequence":"additional","affiliation":[{"name":"Faculty of Natural Sciences, Department of Biochemistry, Comenius University in Bratislava , Ilkovi\u010dova 6, 842 15 Bratislava, Slovak Republic"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jozef","family":"Nosek","sequence":"additional","affiliation":[{"name":"Faculty of Natural Sciences, Department of Biochemistry, Comenius University in Bratislava , Ilkovi\u010dova 6, 842 15 Bratislava, Slovak Republic"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0019-1735","authenticated-orcid":false,"given":"Toni","family":"Gabald\u00f3n","sequence":"additional","affiliation":[{"name":"Life Sciences Department, Barcelona Supercomputing Center (BSC) , Jordi Girona, 29, 08034 Barcelona, Spain"},{"name":"Mechanisms of Disease Department, Institute for Research in Biomedicine (IRB) , Barcelona, Spain"},{"name":"ICREA , Pg. Lluis Companys 23, Barcelona 08010, Spain"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2021,6,15]]},"reference":[{"key":"2022061811030418000_dsab006-B1","doi-asserted-by":"crossref","first-page":"a019778","DOI":"10.1101\/cshperspect.a019778","article-title":"The Candida pathogenic species complex","volume":"4","author":"Turner","year":"2014","journal-title":"Cold Spring Harb. Perspect. Med"},{"key":"2022061811030418000_dsab006-B2","doi-asserted-by":"crossref","first-page":"1366","DOI":"10.1128\/JCM.02117-09","article-title":"Results from the ARTEMIS DISK Global Antifungal Surveillance Study, 1997 to 2007: a 10.5-year analysis of susceptibilities of Candida Species to fluconazole and voriconazole as determined by CLSI standardized disk diffusion","volume":"48","author":"Pfaller","year":"2010","journal-title":"J. Clin. 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