{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,5]],"date-time":"2026-10-05T01:18:38Z","timestamp":1791163118893,"version":"4.1.0"},"reference-count":83,"publisher":"Oxford University Press (OUP)","issue":"6","license":[{"start":{"date-parts":[[2022,10,5]],"date-time":"2022-10-05T00:00:00Z","timestamp":1664928000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"funder":[{"name":"National BioResource Project for Algae","award":["17km0210116j0001"],"award-info":[{"award-number":["17km0210116j0001"]}]},{"DOI":"10.13039\/501100001700","name":"Ministry of Education, Culture, Sports, Science and Technology","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100001700","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2022,12,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>Diatoms function as major primary producers, accumulating large amounts of biomass in most aquatic environments. Given their rapid responses to changes in environmental conditions, diatoms are used for the biological monitoring of water quality and for performing ecotoxicological tests in aquatic ecosystems. However, the molecular basis for their toxicity to chemical compounds remains largely unknown. Here, we sequenced the genome of a freshwater diatom, Mayamaea pseudoterrestris NIES-4280, which has been proposed as an alternative strain of Navicula pelliculosa UTEX 664 for performing the Organisation for Economic Co-operation and Development ecotoxicological test. This study shows that M. pseudoterrestris has a small genome and carries the lowest number of genes among freshwater diatoms. The gene content of M. pseudoterrestris is similar to that of the model marine diatom, Phaeodactylum tricornutum. Genes related to cell motility, polysaccharide metabolism, oxidative stress alleviation, intracellular calcium signalling, and reactive compound detoxification showed rapid changes in their expression patterns in response to copper exposure. Active gliding motility was observed in response to copper addition, and copper exposure decreased intracellular calcium concentration. These findings enhance our understanding of the environmental adaptation of diatoms, and elucidate the molecular basis of toxicity of chemical compounds in algae.<\/jats:p>","DOI":"10.1093\/dnares\/dsac037","type":"journal-article","created":{"date-parts":[[2022,10,5]],"date-time":"2022-10-05T10:46:47Z","timestamp":1664966807000},"source":"Crossref","is-referenced-by-count":16,"title":["Rapid transcriptomic and physiological changes in the freshwater pennate diatom\n                    <i>Mayamaea pseudoterrestris<\/i>\n                    in response to copper exposure"],"prefix":"10.1093","volume":"29","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-6388-8655","authenticated-orcid":false,"given":"Shigekatsu","family":"Suzuki","sequence":"first","affiliation":[{"name":"Biodiversity Division, National Institute for Environmental Studies , Tsukuba , Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4349-3047","authenticated-orcid":false,"given":"Shuhei","family":"Ota","sequence":"additional","affiliation":[{"name":"Biodiversity Division, National Institute for Environmental Studies , Tsukuba , Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Takahiro","family":"Yamagishi","sequence":"additional","affiliation":[{"name":"Health and Environmental Risk Division, National Institute for Environmental Studies , Tsukuba , Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Akihiro","family":"Tuji","sequence":"additional","affiliation":[{"name":"Department of Botany, National Museum of Nature and Science , Tsukuba , Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Haruyo","family":"Yamaguchi","sequence":"additional","affiliation":[{"name":"Biodiversity Division, National Institute for Environmental Studies , Tsukuba , Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Masanobu","family":"Kawachi","sequence":"additional","affiliation":[{"name":"Biodiversity Division, National Institute for Environmental Studies , Tsukuba , Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2022,10,5]]},"reference":[{"key":"2022120621431258300_CIT0001","doi-asserted-by":"crossref","first-page":"359","DOI":"10.1029\/95GB01070","article-title":"Production and dissolution of biogenic silica in the ocean: revised global estimates, comparison with regional data and relationship to biogenic sedimentation","volume":"9","author":"Nelson","year":"1995","journal-title":"Glob. 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The number, distributions, and origins of diatom species","volume":"60","author":"Mann","year":"2013","journal-title":"J. Eukaryot. Microbiol."},{"key":"2022120621431258300_CIT0007","doi-asserted-by":"crossref","first-page":"593","DOI":"10.1007\/978-3-319-13425-3_28","article-title":"Application of diatom-based indices for monitoring environmental quality of riverine ecosystems: a review.","volume-title":"Environmental management of river basin ecosystems","author":"Venkatachalapathy","year":"2015"},{"key":"2022120621431258300_CIT0008","doi-asserted-by":"crossref","first-page":"215","DOI":"10.1023\/A:1008033201227","article-title":"Recommendations for the routine sampling of diatoms for water quality assessments in Europe","volume":"10","author":"Kelly","year":"1998","journal-title":"J. Appl. Phycol."},{"key":"2022120621431258300_CIT0009","doi-asserted-by":"crossref","first-page":"827","DOI":"10.1111\/j.1365-2427.2007.01935.x","article-title":"Are diatoms good integrators of temporal variability in stream water quality?","volume":"53","author":"Lavoie","year":"2008","journal-title":"Freshw. Biol."},{"key":"2022120621431258300_CIT0010","doi-asserted-by":"crossref","first-page":"279","DOI":"10.1016\/j.scitotenv.2015.05.101","article-title":"Variation in stream diatom communities in relation to water quality and catchment variables in a boreal, urbanized region","volume":"530\u20131","author":"Teittinen","year":"2015","journal-title":"Sci. Total Environ."},{"key":"2022120621431258300_CIT0011","doi-asserted-by":"crossref","first-page":"2096","DOI":"10.1890\/10-1023.1","article-title":"Large-scale biodiversity patterns in freshwater phytoplankton","volume":"92","author":"Stomp","year":"2011","journal-title":"Ecology"},{"key":"2022120621431258300_CIT0012","doi-asserted-by":"crossref","first-page":"170","DOI":"10.1007\/s00244-017-0409-6","article-title":"Design and testing of a new diatom-based index for heavy metal pollution","volume":"74","author":"Fern\u00e1ndez","year":"2018","journal-title":"Arch. Environ. Contam. Toxicol."},{"key":"2022120621431258300_CIT0013","doi-asserted-by":"crossref","first-page":"214","DOI":"10.1016\/j.scitotenv.2017.08.181","article-title":"Development of a diatom-based multimetric index for acid mine drainage impacted depressional wetlands","volume":"612","author":"Riato","year":"2018","journal-title":"Sci. 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Saf."},{"key":"2022120621431258300_CIT0019","doi-asserted-by":"crossref","first-page":"159","DOI":"10.1002\/9781119526483.ch7","article-title":"Diatom motility: mechanisms, control and adaptive value","volume-title":"Diatom gliding motility","author":"Ser\u00f4dio","year":"2021"},{"key":"2022120621431258300_CIT0020","first-page":"47","article-title":"Diatom locomotion.","volume-title":"Progress in phycological research","author":"Edgar","year":"1984"},{"key":"2022120621431258300_CIT0021","doi-asserted-by":"crossref","first-page":"365","DOI":"10.1080\/08927010802254583","article-title":"The biology of biofouling diatoms and their role in the development of microbial slimes","volume":"24","author":"Molino","year":"2008","journal-title":"Biofouling"},{"key":"2022120621431258300_CIT0022","doi-asserted-by":"crossref","first-page":"372","DOI":"10.1016\/j.scitotenv.2015.11.151","article-title":"Exploring the status of motility, lipid bodies, deformities and size reduction in periphytic diatom community from chronically metal (Cu, Zn) polluted waterbodies as a biomonitoring tool","volume":"550","author":"Pandey","year":"2016","journal-title":"Sci. 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