{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,17]],"date-time":"2026-08-17T23:17:59Z","timestamp":1787008679891,"version":"build-2736575974"},"reference-count":75,"publisher":"Oxford University Press (OUP)","issue":"5","license":[{"start":{"date-parts":[[2024,6,7]],"date-time":"2024-06-07T00:00:00Z","timestamp":1717718400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"Kazusa DNA Research Institute Foundation"},{"DOI":"10.13039\/501100001691","name":"KAKENHI","doi-asserted-by":"publisher","award":["22H02321"],"award-info":[{"award-number":["22H02321"]}],"id":[{"id":"10.13039\/501100001691","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2024,10,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>Micro-Tom is a cultivar of tomato (Solanum lycopersicum), which is known as a major crop and model plant in Solanaceae. Micro-Tom has phenotypic traits such as dwarfism, and substantial EMS-mutagenized lines have been reported. After Micro-Tom was generated in Florida, USA, it was distributed to research institutes worldwide and used as a genetic resource. In Japan, the Micro-Tom lines have been genetically fixed; currently, three lines have been re-distributed from three institutes, but many phenotypes among the lines have been observed. We have determined the genome sequence de novo of the Micro-Tom KDRI line, one of the Micro-Tom lines distributed from Kazusa DNA Research Institute (KDRI) in Japan, and have built chromosome-scale pseudomolecules. Genotypes among six Micro-Tom lines, including three in Japan, one in the United States, one in France, and one in Brazil showed phenotypic alternation. Here, we unveiled the swift emergence of genetic diversity in both phenotypes and genotypes within the Micro-Tom genome sequence during its propagation. These findings offer valuable insights crucial for the management of bioresources.<\/jats:p>","DOI":"10.1093\/dnares\/dsae016","type":"journal-article","created":{"date-parts":[[2024,6,2]],"date-time":"2024-06-02T17:12:11Z","timestamp":1717348331000},"source":"Crossref","is-referenced-by-count":9,"title":["Genomic variation across distribution of Micro-Tom, a model cultivar of tomato (\n                    <i>Solanum lycopersicum<\/i>\n                    )"],"prefix":"10.1093","volume":"31","author":[{"given":"Hideki","family":"Nagasaki","sequence":"first","affiliation":[{"name":"Department of Applied Genomics, Kazusa DNA Research Institute , 2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818 ,","place":["Japan"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7880-6221","authenticated-orcid":false,"given":"Kenta","family":"Shirasawa","sequence":"additional","affiliation":[{"name":"Department of Frontier Research and Development, Kazusa DNA Research Institute , 2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818 ,","place":["Japan"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ken","family":"Hoshikawa","sequence":"additional","affiliation":[{"name":"Tsukuba Plant Innovation Research Center, Institute of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572 ,","place":["Japan"]},{"name":"Biological Resources and Post-harvest Division, Japan International Research Center for Agricultural Sciences , 1-1 Ohwashi, Tsukuba, Ibaraki 305-8686 ,","place":["Japan"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9555-5054","authenticated-orcid":false,"given":"Sachiko","family":"Isobe","sequence":"additional","affiliation":[{"name":"Department of Applied Genomics, Kazusa DNA Research Institute , 2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818 ,","place":["Japan"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1443-2210","authenticated-orcid":false,"given":"Hiroshi","family":"Ezura","sequence":"additional","affiliation":[{"name":"Tsukuba Plant Innovation Research Center, Institute of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572 ,","place":["Japan"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Koh","family":"Aoki","sequence":"additional","affiliation":[{"name":"Graduate School of Life and Environmental Sciences, Osaka Metropolitan University , 1-1 Gakuen-cho, Naka-ku, Sakai, Osaka 599-8531 ,","place":["Japan"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hideki","family":"Hirakawa","sequence":"additional","affiliation":[{"name":"Department of Applied Genomics, Kazusa DNA Research Institute , 2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818 ,","place":["Japan"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2024,6,7]]},"reference":[{"key":"2024101612245147200_CIT0001","doi-asserted-by":"crossref","first-page":"139873","DOI":"10.1155\/2014\/139873","article-title":"Enhancing the health-promoting effects of tomato fruit for biofortified food","volume":"2014","author":"Raiola","year":"2014","journal-title":"Mediat Inflamm."},{"key":"2024101612245147200_CIT0002","doi-asserted-by":"crossref","first-page":"1085","DOI":"10.1093\/aob\/mcm150","article-title":"Domestication and breeding of tomatoes: what have we gained and what can we gain in the future","volume":"100","author":"Bai","year":"2007","journal-title":"Ann Bot"},{"key":"2024101612245147200_CIT0003","doi-asserted-by":"crossref","first-page":"73","DOI":"10.1111\/tpj.14152","article-title":"Trait discovery and editing in tomato","volume":"97","author":"Rothan","year":"2019","journal-title":"Plant J."},{"key":"2024101612245147200_CIT0004","doi-asserted-by":"crossref","first-page":"283","DOI":"10.1093\/pcp\/pcr004","article-title":"TOMATOMA: a novel tomato mutant database distributing Micro-Tom mutant collections","volume":"52","author":"Saito","year":"2011","journal-title":"Plant Cell Physiol."},{"key":"2024101612245147200_CIT0005","first-page":"1","article-title":"Micro-Tom: a miniature dwarf tomato,","volume":"370","author":"Scott","year":"1989","journal-title":"Florida Agr. 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