{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,5]],"date-time":"2026-10-05T18:06:45Z","timestamp":1791223605758,"version":"4.1.0"},"reference-count":274,"publisher":"Oxford University Press (OUP)","license":[{"start":{"date-parts":[[2025,5,19]],"date-time":"2025-05-19T00:00:00Z","timestamp":1747612800000},"content-version":"vor","delay-in-days":138,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100020884","name":"ANID","doi-asserted-by":"publisher","award":["21211723"],"award-info":[{"award-number":["21211723"]}],"id":[{"id":"10.13039\/501100020884","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100020884","name":"ANID","doi-asserted-by":"publisher","award":["21210134"],"award-info":[{"award-number":["21210134"]}],"id":[{"id":"10.13039\/501100020884","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100020884","name":"ANID","doi-asserted-by":"publisher","award":["21242707"],"award-info":[{"award-number":["21242707"]}],"id":[{"id":"10.13039\/501100020884","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100020884","name":"ANID","doi-asserted-by":"publisher","award":["2230193"],"award-info":[{"award-number":["2230193"]}],"id":[{"id":"10.13039\/501100020884","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100020884","name":"Agencia Nacional de Investigaci\u00f3n y Desarrollo","doi-asserted-by":"publisher","award":["NCN2023_054"],"award-info":[{"award-number":["NCN2023_054"]}],"id":[{"id":"10.13039\/501100020884","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100006525","name":"USM","doi-asserted-by":"publisher","award":["PI_M_2020_43"],"award-info":[{"award-number":["PI_M_2020_43"]}],"id":[{"id":"10.13039\/100006525","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100006525","name":"USM","doi-asserted-by":"publisher","award":["PI_ PI_M_23_02"],"award-info":[{"award-number":["PI_ PI_M_23_02"]}],"id":[{"id":"10.13039\/100006525","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2025,1,14]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>The adaptive mechanisms of Burkholderiales during the catabolism of aromatic compounds and abiotic stress are crucial for their fitness and performance. The aims of this report are to review the bacterial adaptation mechanisms to aromatic compounds, oxidative stress, and environmental stressful conditions, focusing on the model aromatic-degrading Paraburkholderia xenovorans LB400, other Burkholderiales, and relevant degrading bacteria. These mechanisms include (i) the stress response during aromatic degradation, (ii) the oxidative stress response to aromatic compounds, (iii) the metabolic adaptation to oxidative stress, (iv) the osmoadaptation to saline stress, (v) the synthesis of siderophore during iron limitation, (vi) the proteostasis network, which plays a crucial role in cellular function maintenance, and (vii) the modification of cellular membranes, morphology, and bacterial lifestyle. Remarkably, we include, for the first time, novel genomic analyses on proteostasis networks, carbon metabolism modulation, and the synthesis of stress-related molecules in P. xenovorans. We analyzed these metabolic features in silico to gain insights into the adaptive strategies of P. xenovorans to challenging environmental conditions. Understanding how to enhance bacterial stress responses can lead to the selection of more robust strains capable of thriving in polluted environments, which is critical for improving biodegradation and bioremediation strategies.<\/jats:p>","DOI":"10.1093\/femsre\/fuaf021","type":"journal-article","created":{"date-parts":[[2025,5,19]],"date-time":"2025-05-19T16:30:24Z","timestamp":1747672224000},"source":"Crossref","is-referenced-by-count":21,"title":["Surfing in the storm: how <i>Paraburkholderia xenovorans<\/i> thrives under stress during biodegradation of toxic aromatic compounds and other stressors"],"prefix":"10.1093","volume":"49","author":[{"given":"Valentina","family":"M\u00e9ndez","sequence":"first","affiliation":[{"name":"Universidad T\u00e9cnica Federico Santa Mar\u00eda Molecular Microbiology and Environmental Biotechnology, Department of Chemistry & Center of Biotechnology Daniel Alkalay Lowitt, , Avenida Espa\u00f1a 1680, 2390123 Valpara\u00edso,","place":["Chile"]},{"name":"Millennium Nucleus Bioproducts, Genomics and Environmental Microbiology (BioGEM) , Avenida Espa\u00f1a 1680, 2390123 Valpara\u00edso,","place":["Chile"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mario","family":"Sep\u00falveda","sequence":"additional","affiliation":[{"name":"Universidad T\u00e9cnica Federico Santa Mar\u00eda Molecular Microbiology and Environmental Biotechnology, Department of Chemistry & Center of Biotechnology Daniel Alkalay Lowitt, , Avenida Espa\u00f1a 1680, 2390123 Valpara\u00edso,","place":["Chile"]},{"name":"Millennium Nucleus Bioproducts, Genomics and Environmental Microbiology (BioGEM) , Avenida Espa\u00f1a 1680, 2390123 Valpara\u00edso,","place":["Chile"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Katherin","family":"Izquierdo-Fiallo","sequence":"additional","affiliation":[{"name":"Faculty of Chemistry and Biology, Universidad de Santiago de Chile Department of Biology, , Avenida Libertador Bernardo O'Higgins 3363 , Santiago,","place":["Chile"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Constanza C","family":"Macaya","sequence":"additional","affiliation":[{"name":"Universidad T\u00e9cnica Federico Santa Mar\u00eda Molecular Microbiology and Environmental Biotechnology, Department of Chemistry & Center of Biotechnology Daniel Alkalay Lowitt, , Avenida Espa\u00f1a 1680, 2390123 Valpara\u00edso,","place":["Chile"]},{"name":"Millennium Nucleus Bioproducts, Genomics and Environmental Microbiology (BioGEM) , Avenida Espa\u00f1a 1680, 2390123 Valpara\u00edso,","place":["Chile"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Teresa","family":"Esparza","sequence":"additional","affiliation":[{"name":"Universidad T\u00e9cnica Federico Santa Mar\u00eda Molecular Microbiology and Environmental Biotechnology, Department of Chemistry & Center of Biotechnology Daniel Alkalay Lowitt, , Avenida Espa\u00f1a 1680, 2390123 Valpara\u00edso,","place":["Chile"]},{"name":"Millennium Nucleus Bioproducts, Genomics and Environmental Microbiology (BioGEM) , Avenida Espa\u00f1a 1680, 2390123 Valpara\u00edso,","place":["Chile"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ximena","family":"B\u00e1ez-Matus","sequence":"additional","affiliation":[{"name":"Universidad T\u00e9cnica Federico Santa Mar\u00eda Molecular Microbiology and Environmental Biotechnology, Department of Chemistry & Center of Biotechnology Daniel Alkalay Lowitt, , Avenida Espa\u00f1a 1680, 2390123 Valpara\u00edso,","place":["Chile"]},{"name":"Millennium Nucleus Bioproducts, Genomics and Environmental Microbiology (BioGEM) , Avenida Espa\u00f1a 1680, 2390123 Valpara\u00edso,","place":["Chile"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Roberto E","family":"Dur\u00e1n","sequence":"additional","affiliation":[{"name":"Universidad T\u00e9cnica Federico Santa Mar\u00eda Molecular Microbiology and Environmental Biotechnology, Department of Chemistry & Center of Biotechnology Daniel Alkalay Lowitt, , Avenida Espa\u00f1a 1680, 2390123 Valpara\u00edso,","place":["Chile"]},{"name":"Millennium Nucleus Bioproducts, Genomics and Environmental Microbiology (BioGEM) , Avenida Espa\u00f1a 1680, 2390123 Valpara\u00edso,","place":["Chile"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1275-7399","authenticated-orcid":false,"given":"Gloria","family":"Levic\u00e1n","sequence":"additional","affiliation":[{"name":"Faculty of Chemistry and Biology, Universidad de Santiago de Chile Department of Biology, , Avenida Libertador Bernardo O'Higgins 3363 , Santiago,","place":["Chile"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-3925-1996","authenticated-orcid":false,"given":"Michael","family":"Seeger","sequence":"additional","affiliation":[{"name":"Universidad T\u00e9cnica Federico Santa Mar\u00eda Molecular Microbiology and Environmental Biotechnology, Department of Chemistry & Center of Biotechnology Daniel Alkalay Lowitt, , Avenida Espa\u00f1a 1680, 2390123 Valpara\u00edso,","place":["Chile"]},{"name":"Millennium Nucleus Bioproducts, Genomics and Environmental Microbiology (BioGEM) , Avenida Espa\u00f1a 1680, 2390123 Valpara\u00edso,","place":["Chile"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2025,5,19]]},"reference":[{"key":"2025052805012202500_bib1","doi-asserted-by":"publisher","first-page":"6982","DOI":"10.1128\/JB.187.20.6982-6990.2005","article-title":"Properties of a novel intracellular poly(3-hydroxybutyrate) depolymerase with high specific activity (PhaZd) in Wautersia eutropha H16","volume":"187","author":"Abe","year":"2005","journal-title":"J Bacteriol"},{"key":"2025052805012202500_bib2","doi-asserted-by":"publisher","first-page":"355","DOI":"10.2174\/1389200223666220328143828","article-title":"Cytochromes P450: role in carcinogenesis and relevance to cancers","volume":"23","author":"Abu-Bakar","year":"2022","journal-title":"CDM"},{"key":"2025052805012202500_bib3","doi-asserted-by":"publisher","first-page":"1117684","DOI":"10.3389\/fmicb.2023.1117684","article-title":"Redundant potassium transporter systems guarantee the survival of Enterococcus faecalis under stress conditions","volume":"14","author":"Acciarri","year":"2023","journal-title":"Front Microbiol"},{"key":"2025052805012202500_bib4","doi-asserted-by":"publisher","first-page":"692","DOI":"10.1016\/j.ijbiomac.2017.08.066","article-title":"Bacterial polyhydroxybutyrate for electrospun fiber production","volume":"106","author":"Acevedo","year":"2018","journal-title":"Int J Biol Macromol"},{"key":"2025052805012202500_bib5","doi-asserted-by":"publisher","first-page":"3631","DOI":"10.1128\/JB.188.10.3631-3644.2006","article-title":"The ornibactin biosynthesis and transport genes of Burkholderia cenocepacia are regulated by an extracytoplasmic function sigma factor which is a part of the Fur regulon","volume":"188","author":"Agnoli","year":"2006","journal-title":"J Bacteriol"},{"key":"2025052805012202500_bib6","doi-asserted-by":"publisher","first-page":"167","DOI":"10.1111\/j.1574-6968.2006.00554.x","article-title":"Response to (chloro)biphenyls of the polychlorobiphenyl-degrader Burkholderia xenovorans LB400 involves stress proteins also induced by heat shock and oxidative stress","volume":"267","author":"Agull\u00f3","year":"2007","journal-title":"FEMS Microbiol Lett"},{"key":"2025052805012202500_bib7","doi-asserted-by":"publisher","first-page":"e0169544","DOI":"10.1371\/journal.pone.0169544","article-title":"P-cymene promotes its catabolism through the p-cymene and the p-cumate pathways, activates a stress response and reduces the biofilm formation in Burkholderia xenovorans LB400","volume":"12","author":"Agull\u00f3","year":"2017","journal-title":"PLoS One"},{"key":"2025052805012202500_bib8","doi-asserted-by":"publisher","first-page":"449","DOI":"10.1093\/jb\/mvp071","article-title":"Quality control of cytoplasmic membrane proteins in Escherichia coli","volume":"146","author":"Akiyama","year":"2009","journal-title":"J Biochem"},{"key":"2025052805012202500_bib9","doi-asserted-by":"publisher","DOI":"10.1128\/mBio.01512-18","article-title":"The metabolic redox regime of Pseudomonas putida tunes its evolvability toward novel xenobiotic substrates","volume":"9","author":"Akkaya","year":"2018","journal-title":"mBio"},{"key":"2025052805012202500_bib10","doi-asserted-by":"publisher","first-page":"1551","DOI":"10.1128\/JB.188.4.1551-1566.2006","article-title":"Genetic and transcriptional analysis of the siderophore malleobactin biosynthesis and transport genes in the human pathogen Burkholderia pseudomallei K96243","volume":"188","author":"Alice","year":"2006","journal-title":"J Bacteriol"},{"key":"2025052805012202500_bib11","doi-asserted-by":"publisher","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool","volume":"215","author":"Altschul","year":"1990","journal-title":"J Mol Biol"},{"key":"2025052805012202500_bib12","doi-asserted-by":"publisher","first-page":"1290","DOI":"10.3390\/microorganisms9061290","article-title":"Genome-wide metabolic reconstruction of the synthesis of polyhydroxyalkanoates from sugars and fatty acids by Burkholderia sensu lato species","volume":"9","author":"\u00c1lvarez-Santullano","year":"2021","journal-title":"Microorganisms"},{"key":"2025052805012202500_bib13","doi-asserted-by":"publisher","first-page":"80","DOI":"10.3390\/environments9070080","article-title":"Enhanced exoelectrogenic activity of Cupriavidus metallidurans in bioelectrochemical systems through the expression of a constitutively active diguanylate cyclase","volume":"9","author":"Alviz-Gazitua","year":"2022","journal-title":"Environments"},{"key":"2025052805012202500_bib14","doi-asserted-by":"publisher","first-page":"1499","DOI":"10.3389\/fmicb.2019.01499","article-title":"The response of Cupriavidus metallidurans CH34 to cadmium involves inhibition of the initiation of biofilm formation, decrease in intracellular c-di-GMP levels, and a novel metal regulated phosphodiesterase","volume":"10","author":"Alviz-Gazitua","year":"2019","journal-title":"Front Microbiol"},{"key":"2025052805012202500_bib284_437_263325","doi-asserted-by":"publisher","first-page":"e15979","DOI":"10.1371\/journal.pone.0015979","article-title":"The Escherichia coli BtuE protein functions as a resistance determinant against reactive oxygen species","volume":"6","author":"Arenas","year":"2011","journal-title":"PLoS ONE"},{"key":"2025052805012202500_bib15","doi-asserted-by":"publisher","first-page":"103","DOI":"10.1080\/19336896.2016.1141858","article-title":"Hsp31, a member of the DJ-1 superfamily, is a multitasking stress responder with chaperone activity","volume":"10","author":"Aslam","year":"2016","journal-title":"Prion"},{"key":"2025052805012202500_bib16","doi-asserted-by":"publisher","first-page":"164720","DOI":"10.1016\/j.scitotenv.2023.164720","article-title":"Efficacy of bioadmendments in reducing the influence of salinity on the bioremediation of oil-contaminated soil","volume":"892","author":"Atai","year":"2023","journal-title":"Sci Total Environ"},{"key":"2025052805012202500_bib17","doi-asserted-by":"publisher","first-page":"43","DOI":"10.1007\/s40726-020-00137-5","article-title":"Impacts of oil and gas production on contaminant levels in sediments","volume":"6","author":"Atoufi","year":"2020","journal-title":"Curr Pollut Rep"},{"key":"2025052805012202500_bib18","doi-asserted-by":"publisher","first-page":"689","DOI":"10.1007\/s12192-023-01392-3","article-title":"A review on oligomeric polydispersity and oligomers-dependent holding chaperone activity of the small heat-shock protein IbpB of Escherichia coli","volume":"28","author":"Azaharuddin","year":"2023","journal-title":"Cell Stress Chaperones"},{"key":"2025052805012202500_bib19","doi-asserted-by":"publisher","first-page":"37565","DOI":"10.1074\/jbc.M005211200","article-title":"Structure and activity of ClpB from Escherichia coli. Role of the amino- and -carboxyl-terminal domains","volume":"275","author":"Barnett","year":"2000","journal-title":"J Biol Chem"},{"key":"2025052805012202500_bib20","doi-asserted-by":"publisher","first-page":"2821","DOI":"10.1099\/00221287-145-10-2821","article-title":"Occurrence and expression of glutathione-S-transferase-encoding bphK genes in Burkholderia sp. strain LB400 and other biphenyl-utilizing bacteria","volume":"145","author":"Bartels","year":"1999","journal-title":"Microbiology"},{"key":"2025052805012202500_bib21","doi-asserted-by":"publisher","first-page":"6217","DOI":"10.1128\/AEM.01525-12","article-title":"Membrane vesicle formation as a multiple-stress response mechanism enhances Pseudomonas putida DOT-T1E cell surface hydrophobicity and biofilm formation","volume":"78","author":"Baumgarten","year":"2012","journal-title":"Appl Environ Microbiol"},{"key":"2025052805012202500_bib22","doi-asserted-by":"publisher","first-page":"178452","DOI":"10.1016\/j.scitotenv.2025.178452","article-title":"Advances in polyhydroxyalkanoate (PHA) production from renewable waste materials using halophilic microorganisms: a comprehensive review","volume":"963","author":"Ben\u00a0Abdallah","year":"2025","journal-title":"Sci Total Environ"},{"key":"2025052805012202500_bib23","doi-asserted-by":"publisher","first-page":"247","DOI":"10.1111\/j.1574-6968.2001.tb10723.x","article-title":"Protein synthesis patterns in Acinetobacter calcoaceticus induced by phenol and catechol show specificities of responses to chemostress","volume":"200","author":"Benndorf","year":"2001","journal-title":"FEMS Microbiol Lett"},{"key":"2025052805012202500_bib24","doi-asserted-by":"publisher","first-page":"20407","DOI":"10.1073\/pnas.1209565109","article-title":"Alternative bacterial two-component small heat shock protein systems","volume":"109","author":"Bepperling","year":"2012","journal-title":"Proc Natl Acad Sci USA"},{"key":"2025052805012202500_bib25","doi-asserted-by":"publisher","first-page":"e88368","DOI":"10.1371\/journal.pone.0088368","article-title":"Robustness and plasticity of metabolic pathway flux among uropathogenic isolates of Pseudomonas aeruginosa","volume":"9","author":"Berger","year":"2014","journal-title":"PLoS One"},{"key":"2025052805012202500_bib26","doi-asserted-by":"publisher","first-page":"427","DOI":"10.1128\/aem.63.2.427-434.1997","article-title":"Evidence that formation of protoanemonin from metabolites of 4-chlorobiphenyl degradation negatively affects the survival of 4-chlorobiphenyl-cometabolizing microorganisms","volume":"63","author":"Blasco","year":"1997","journal-title":"Appl Environ Microbiol"},{"key":"2025052805012202500_bib27","doi-asserted-by":"publisher","first-page":"29229","DOI":"10.1074\/jbc.270.49.29229","article-title":"From xenobiotic to antibiotic, formation of protoanemonin from 4-chlorocatechol by enzymes of the 3-oxoadipate pathway","volume":"270","author":"Blasco","year":"1995","journal-title":"J Biol Chem"},{"key":"2025052805012202500_bib28","doi-asserted-by":"publisher","first-page":"2436","DOI":"10.1111\/j.1462-2920.2010.02217.x","article-title":"Consortia modulation of the stress response: proteomic analysis of single strain versus mixed culture: consortia modulation of stress response","volume":"12","author":"Bobadilla-Fazzini","year":"2010","journal-title":"Environ Microbiol"},{"key":"2025052805012202500_bib29","doi-asserted-by":"publisher","first-page":"131","DOI":"10.3390\/antiox7100131","article-title":"Molecular mechanisms of the methionine sulfoxide reductase system from Neisseria meningitidis","volume":"7","author":"Boschi-Muller","year":"2018","journal-title":"Antioxidants"},{"key":"2025052805012202500_bib30","doi-asserted-by":"publisher","DOI":"10.1128\/IAI.00528-19","article-title":"Peptidyl-prolyl isomerase ppiB is essential for proteome homeostasis and virulence in Burkholderia pseudomallei","volume":"87","author":"Bzdyl","year":"2019","journal-title":"Infect Immun"},{"key":"2025052805012202500_bib31","doi-asserted-by":"publisher","first-page":"842","DOI":"10.1111\/j.1462-2920.2004.00630.x","article-title":"From PCBs to highly toxic metabolites by the biphenyl pathway","volume":"6","author":"C\u00e1mara","year":"2004","journal-title":"Environ Microbiol"},{"key":"2025052805012202500_bib32","doi-asserted-by":"publisher","first-page":"455","DOI":"10.1099\/00221287-146-2-455","article-title":"Genes for the synthesis of the osmoprotectant glycine betaine from choline in the moderately halophilic bacterium Halomonas elongata DSM 3043, USA","volume":"146","author":"C\u00e1novas","year":"2000","journal-title":"Microbiology"},{"key":"2025052805012202500_bib33","doi-asserted-by":"publisher","first-page":"1442","DOI":"10.1016\/j.bbamcr.2013.11.007","article-title":"Chaperone networking facilitates protein targeting to the bacterial cytoplasmic membrane","volume":"1843","author":"Castani\u00e9-Cornet","year":"2014","journal-title":"Biochim Biophys Acta Mol Cell Res"},{"key":"2025052805012202500_bib34","doi-asserted-by":"publisher","first-page":"15280","DOI":"10.1073\/pnas.0606924103","article-title":"Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility","volume":"103","author":"Chain","year":"2006","journal-title":"Proc Natl Acad Sci USA"},{"key":"2025052805012202500_bib278_389_255125","doi-asserted-by":"publisher","first-page":"1661","DOI":"10.1016\/j.jmb.2018.03.027","article-title":"Zinc-induced reversible multimerization and enhanced chaperone activity of Escherichia coli Hsp31, a DJ-1 superfamily member","volume":"430","author":"Chatterjee","year":"2018","journal-title":"J Mol Biol"},{"key":"2025052805012202500_bib36","doi-asserted-by":"publisher","first-page":"1772","DOI":"10.1111\/1462-2920.12069","article-title":"The Entner-Doudoroff pathway empowers Pseudomonas putida KT2440 with a high tolerance to oxidative stress: perturbing the upper metabolism of P. putida with PFK","volume":"15","author":"Chavarr\u00eda","year":"2013","journal-title":"Environ Microbiol"},{"key":"2025052805012202500_bib37","doi-asserted-by":"publisher","first-page":"4693","DOI":"10.1007\/s00253-021-11347-2","article-title":"New insights into the function of the proteins IsiC and IsiD from Synechocystis sp. PCC 6803 under iron limitation","volume":"105","author":"Cheng","year":"2021","journal-title":"Appl Microbiol Biotechnol"},{"key":"2025052805012202500_bib38","doi-asserted-by":"publisher","first-page":"e75746","DOI":"10.1371\/journal.pone.0075746","article-title":"Genomic and functional analyses of the 2-aminophenol catabolic pathway and partial conversion of its substrate into picolinic acid in Burkholderia xenovorans LB400","volume":"8","author":"Chirino","year":"2013","journal-title":"PLoS One"},{"key":"2025052805012202500_bib39","doi-asserted-by":"publisher","first-page":"545","DOI":"10.3390\/life11060545","article-title":"Salinity stress in potato: understanding physiological, biochemical and molecular responses","volume":"11","author":"Chourasia","year":"2021","journal-title":"Life"},{"key":"2025052805012202500_bib40","doi-asserted-by":"publisher","first-page":"479","DOI":"10.1099\/mic.0.073353-0","article-title":"A small heat-shock protein (Hsp20) regulated by RpoS is essential for cyst desiccation resistance in Azotobacter vinelandii","volume":"160","author":"Cocotl-Ya\u00f1ez","year":"2014","journal-title":"Microbiology"},{"key":"2025052805012202500_bib41","doi-asserted-by":"publisher","first-page":"343","DOI":"10.1099\/mic.0.000424","article-title":"Proteome analysis reveals differential expression of proteins involved in triacylglycerol accumulation by Rhodococcus jostii RHA1 after addition of methyl viologen","volume":"163","author":"Costa","year":"2017","journal-title":"Microbiology"},{"key":"2025052805012202500_bib43","doi-asserted-by":"publisher","first-page":"1549","DOI":"10.1016\/j.jmb.2015.02.014","article-title":"Protein quality control under oxidative stress conditions","volume":"427","author":"Dahl","year":"2015","journal-title":"J Mol Biol"},{"key":"2025052805012202500_bib44","doi-asserted-by":"publisher","first-page":"1489","DOI":"10.1016\/j.bbamcr.2013.12.022","article-title":"The membrane insertase YidC","volume":"1843","author":"Dalbey","year":"2014","journal-title":"Biochim Biophys Acta Mol Cell Res"},{"key":"2025052805012202500_bib46","doi-asserted-by":"publisher","first-page":"e0013624","DOI":"10.1128\/jb.00136-24","article-title":"Pseudomonas putida KT2440: the long journey of a soil-dweller to become a synthetic biology chassis","volume":"206","author":"de\u00a0Lorenzo","year":"2024","journal-title":"J Bacteriol"},{"key":"2025052805012202500_bib47","doi-asserted-by":"publisher","first-page":"100996","DOI":"10.1016\/j.plipres.2019.100996","article-title":"Control of membrane lipid homeostasis by lipid-bilayer associated sensors: a mechanism conserved from bacteria to humans","volume":"76","author":"de\u00a0Mendoza","year":"2019","journal-title":"Prog Lipid Res"},{"key":"2025052805012202500_bib48","doi-asserted-by":"publisher","first-page":"585","DOI":"10.1128\/AEM.72.1.585-595.2006","article-title":"Genetic and genomic insights into the role of benzoate-catabolic pathway redundancy in Burkholderia xenovorans LB400","volume":"72","author":"Denef","year":"2006","journal-title":"Appl Environ Microbiol"},{"key":"2025052805012202500_bib49","doi-asserted-by":"publisher","first-page":"7996","DOI":"10.1128\/JB.187.23.7996-8005.2005","article-title":"Growth substrate- and phase-specific expression of biphenyl, benzoate, and C1 metabolic pathways in Burkholderia xenovorans LB400","volume":"187","author":"Denef","year":"2005","journal-title":"J Bacteriol"},{"key":"2025052805012202500_bib50","article-title":"The adaptation mechanisms of bacteria applied in bioremediation of hydrophobic toxic environmental pollutants: how indigenous and introduced bacteria can respond to persistent organic pollutants-induced stress?","volume-title":"Persistent Organic Pollutants","author":"Dercov\u00e1","year":"2019"},{"key":"2025052805012202500_bib52","doi-asserted-by":"publisher","first-page":"1817","DOI":"10.1007\/s00253-011-3285-4","article-title":"Microbial enzymes for aromatic compound hydroxylation","volume":"90","author":"Di\u00a0Gennaro","year":"2011","journal-title":"Appl Microbiol Biotechnol"},{"key":"2025052805012202500_bib51","doi-asserted-by":"publisher","first-page":"1203","DOI":"10.1126\/science.1160619","article-title":"Redox-active antibiotics control gene expression and community behavior in divergent bacteria","volume":"321","author":"Dietrich","year":"2008","journal-title":"Science"},{"key":"2025052805012202500_bib53","doi-asserted-by":"publisher","first-page":"3406","DOI":"10.1128\/AEM.67.8.3406-3412.2001","article-title":"Effects of iron limitation on the degradation of toluene by Pseudomonas strains carrying the TOL (pWWO) Plasmid","volume":"67","author":"Dinkla","year":"2001","journal-title":"Appl Environ Microbiol"},{"key":"2025052805012202500_bib54","doi-asserted-by":"publisher","first-page":"2057","DOI":"10.1099\/ijsem.0.003431","article-title":"Reclassification of Burkholderia insecticola as Caballeronia insecticola comb. nov. and reliability of conserved signature indels as molecular synapomorphies","volume":"69","author":"Dobritsa","year":"2019","journal-title":"Int J Syst Evol Microbiol"},{"key":"2025052805012202500_bib55","doi-asserted-by":"publisher","DOI":"10.1128\/mBio.02684-19","article-title":"Contextual flexibility in Pseudomonas aeruginosa central carbon metabolism during growth in single carbon sources","volume":"11","author":"Dolan","year":"2020","journal-title":"mBio"},{"key":"2025052805012202500_bib56","doi-asserted-by":"publisher","first-page":"11981","DOI":"10.1074\/jbc.M509848200","article-title":"Transcriptional tradeoff between metabolic and stress-response programs in Pseudomonas putida KT2440 cells exposed to toluene","volume":"281","author":"Dom\u00ednguez-Cuevas","year":"2006","journal-title":"J Biol Chem"},{"key":"2025052805012202500_bib57","doi-asserted-by":"publisher","first-page":"1073","DOI":"10.1039\/b514050c","article-title":"Polyketide synthases and nonribosomal peptide synthetases: the emerging view from bacterial genomics","volume":"24","author":"Donadio","year":"2007","journal-title":"Nat Prod Rep"},{"key":"2025052805012202500_bib58","doi-asserted-by":"publisher","first-page":"2583","DOI":"10.1007\/s00253-018-8832-9","article-title":"Immediate response mechanisms of Gram-negative solvent-tolerant bacteria to cope with environmental stress: cis-trans isomerization of unsaturated fatty acids and outer membrane vesicle secretion","volume":"102","author":"Eberlein","year":"2018","journal-title":"Appl Microbiol Biotechnol"},{"key":"2025052805012202500_bib279_616_255725","doi-asserted-by":"publisher","first-page":"1792","DOI":"10.1093\/nar\/gkh340","article-title":"MUSCLE: multiple sequence alignment with high accuracy and high throughput","volume":"32","author":"Edgar","year":"2004","journal-title":"Nucl Ac Res"},{"key":"2025052805012202500_bib59","doi-asserted-by":"publisher","first-page":"3213","DOI":"10.1128\/JB.00358-13","article-title":"Poly(3-hydroxybutyrate) degradation in Ralstonia eutropha H16 is mediated stereoselectively to (S)-3-hydroxybutyryl coenzyme A (CoA) via crotonyl-CoA","volume":"195","author":"Eggers","year":"2013","journal-title":"J Bacteriol"},{"key":"2025052805012202500_bib60","doi-asserted-by":"publisher","first-page":"221","DOI":"10.1016\/j.bbapap.2004.08.017","article-title":"Methionine sulfoxide reductases in prokaryotes","volume":"1703","author":"Ezraty","year":"2005","journal-title":"Biochim Biophys Acta Proteins Proteomics"},{"key":"2025052805012202500_bib61","doi-asserted-by":"publisher","first-page":"5104","DOI":"10.1128\/AEM.00619-12","article-title":"Enhanced tolerance to naphthalene and enhanced rhizoremediation performance for Pseudomonas putida KT2440 via the NAH7 catabolic plasmid","volume":"78","author":"Fern\u00e1ndez","year":"2012","journal-title":"Appl Environ Microbiol"},{"key":"2025052805012202500_bib62","doi-asserted-by":"publisher","first-page":"1266","DOI":"10.1038\/nbt1103-1266","article-title":"Chaperonins govern growth of Escherichia coli at low temperatures","volume":"21","author":"Ferrer","year":"2003","journal-title":"Nat Biotechnol"},{"key":"2025052805012202500_bib63","doi-asserted-by":"publisher","first-page":"3687","DOI":"10.3390\/ijms21103687","article-title":"Lon protease is important for growth under stressful conditions and pathogenicity of the phytopathogen, bacterium Dickeya solani","volume":"21","author":"Figaj","year":"2020","journal-title":"Int J Mol Sci"},{"key":"2025052805012202500_bib64","doi-asserted-by":"publisher","first-page":"89","DOI":"10.1016\/j.biochi.2018.01.002","article-title":"Glycine betaine rather than acting only as an osmolyte also plays a role as regulator in cellular metabolism","volume":"147","author":"Figueroa-Soto","year":"2018","journal-title":"Biochimie"},{"key":"2025052805012202500_bib65","doi-asserted-by":"publisher","first-page":"415","DOI":"10.1128\/JB.187.2.415-421.2005","article-title":"Evolutionarily divergent extradiol dioxygenases possess higher specificities for polychlorinated biphenyl metabolites","volume":"187","author":"Fortin","year":"2005","journal-title":"J Bacteriol"},{"key":"2025052805012202500_bib66","doi-asserted-by":"publisher","first-page":"8010","DOI":"10.1002\/chem.201500757","article-title":"Plasticity of the malleobactin pathway and its impact on siderophore action in human pathogenic bacteria","volume":"21","author":"Franke","year":"2015","journal-title":"Chem A Eur J"},{"key":"2025052805012202500_bib67","doi-asserted-by":"publisher","first-page":"8271","DOI":"10.1002\/anie.201303196","article-title":"Nitro versus hydroxamate in siderophores of pathogenic bacteria: effect of missing hydroxylamine protection in malleobactin biosynthesis","volume":"52","author":"Franke","year":"2013","journal-title":"Angew Chem Int Ed"},{"key":"2025052805012202500_bib68","doi-asserted-by":"publisher","first-page":"534","DOI":"10.1074\/jbc.272.1.534","article-title":"Bacterial protease Lon is a site-specific DNA-binding protein","volume":"272","author":"Fu","year":"1997","journal-title":"J Biol Chem"},{"key":"2025052805012202500_bib69","doi-asserted-by":"publisher","first-page":"175497","DOI":"10.1016\/j.scitotenv.2024.175497","article-title":"Metagenomic insights into the prokaryotic communities of heavy metal-contaminated hypersaline soils","volume":"951","author":"Galisteo","year":"2024","journal-title":"Sci Total Environ"},{"key":"2025052805012202500_bib70","doi-asserted-by":"publisher","first-page":"6094","DOI":"10.1128\/AEM.01184-06","article-title":"Assay of poly(3-hydroxybutyrate) depolymerase activity and product determination","volume":"72","author":"Gebauer","year":"2006","journal-title":"Appl Environ Microbiol"},{"key":"2025052805012202500_bib71","doi-asserted-by":"publisher","first-page":"6533","DOI":"10.1021\/acs.biochem.7b00786","article-title":"Structure-based insights into the dynamics and function of two-domain SlpA from Escherichia coli","volume":"56","author":"Geitner","year":"2017","journal-title":"Biochemistry"},{"key":"2025052805012202500_bib72","doi-asserted-by":"publisher","first-page":"2109","DOI":"10.1074\/jbc.REV118.002806","article-title":"Hsp90 and Hsp70 chaperones: collaborators in protein remodeling","volume":"294","author":"Genest","year":"2019","journal-title":"J Biol Chem"},{"key":"2025052805012202500_bib73","doi-asserted-by":"publisher","first-page":"7906","DOI":"10.1074\/jbc.M003855200","article-title":"DjlA is a third DnaK co-chaperone of Escherichia coli, and DjlA-mediated induction of colanic acid capsule requires DjlA-DnaK interaction","volume":"276","author":"Genevaux","year":"2001","journal-title":"J Biol Chem"},{"key":"2025052805012202500_bib74","doi-asserted-by":"publisher","first-page":"957","DOI":"10.3390\/fermentation9110957","article-title":"Effects of aromatic compounds degradation on bacterial cell morphology","volume":"9","author":"Gerginova","year":"2023","journal-title":"Fermentation"},{"key":"2025052805012202500_bib75","doi-asserted-by":"publisher","first-page":"236","DOI":"10.1016\/S0958-1669(00)00090-2","article-title":"Aromatic hydrocarbon dioxygenases in environmental biotechnology","volume":"11","author":"Gibson","year":"2000","journal-title":"Curr Opin Biotechnol"},{"key":"2025052805012202500_bib76","doi-asserted-by":"publisher","first-page":"251","DOI":"10.1016\/S0378-1097(03)00309-4","article-title":"BphK shows dechlorination activity against 4-chlorobenzoate, an end product of bph-promoted degradation of PCBs","volume":"222","author":"Gilmartin","year":"2003","journal-title":"FEMS Microbiol Lett"},{"key":"2025052805012202500_bib77","doi-asserted-by":"publisher","first-page":"614","DOI":"10.1016\/j.molcel.2018.04.002","article-title":"CnoX is a chaperedoxin: a holdase that protects its substrates from irreversible oxidation","volume":"70","author":"Goemans","year":"2018","journal-title":"Mol Cell"},{"key":"2025052805012202500_bib78","doi-asserted-by":"publisher","first-page":"6183","DOI":"10.1128\/AEM.00947-06","article-title":"Transcriptomic assessment of isozymes in the biphenyl pathway of Rhodococcus sp. Strain RHA1","volume":"72","author":"Gon\u00e7alves","year":"2006","journal-title":"Appl Environ Microbiol"},{"key":"2025052805012202500_bib79","doi-asserted-by":"publisher","first-page":"493","DOI":"10.1002\/bmb.21136","article-title":"Overexpression, immunodetection, and site-directed mutagenesis of Anabaena sp. PCC 7120 flavodoxin: a comprehensive laboratory practice on molecular biology: a comprehensive laboratory practice on molecular biology","volume":"46","author":"Gonz\u00e1lez","year":"2018","journal-title":"Biochem Mol Bio Educ"},{"key":"2025052805012202500_bib80","doi-asserted-by":"publisher","first-page":"1677","DOI":"10.1099\/ijs.0.63101-0","article-title":"Classification of the biphenyl- and polychlorinated biphenyl-degrading strain LB400T and relatives as Burkholderia xenovorans sp. nov","volume":"54","author":"Goris","year":"2004","journal-title":"Int J Syst Evol Microbiol"},{"key":"2025052805012202500_bib81","doi-asserted-by":"publisher","first-page":"689","DOI":"10.1016\/j.molcel.2014.01.012","article-title":"Polyphosphate is a primordial chaperone","volume":"53","author":"Gray","year":"2014","journal-title":"Mol Cell"},{"key":"2025052805012202500_bib82","doi-asserted-by":"publisher","first-page":"167","DOI":"10.1006\/jmbi.2001.5116","article-title":"Folding properties of the nucleotide exchange factor GrpE from Thermus thermophilus: grpE is a thermosensor that mediates heat shock response","volume":"314","author":"Groemping","year":"2001","journal-title":"J Mol Biol"},{"key":"2025052805012202500_bib83","doi-asserted-by":"publisher","first-page":"8429","DOI":"10.1007\/s11356-019-04358-0","article-title":"Biodegradation of persistent environmental pollutants by Arthrobacter sp","volume":"26","author":"Guo","year":"2019","journal-title":"Environ Sci Pollut Res"},{"key":"2025052805012202500_bib84","doi-asserted-by":"publisher","first-page":"520","DOI":"10.1093\/femsre\/fuw011","article-title":"Impact of genomics on the understanding of microbial evolution and classification: the importance of Darwin's views on classification","volume":"40","author":"Gupta","year":"2016","journal-title":"FEMS Microbiol Rev"},{"key":"2025052805012202500_bib85","doi-asserted-by":"publisher","first-page":"237","DOI":"10.1146\/annurev.mi.38.100184.001321","article-title":"Alterations in outer membrane permeability","volume":"38","author":"Hancock","year":"1984","journal-title":"Annu Rev Microbiol"},{"key":"2025052805012202500_bib86","doi-asserted-by":"publisher","first-page":"519","DOI":"10.1038\/nrm1684","article-title":"AAA+ proteins: have engine, will work","volume":"6","author":"Hanson","year":"2005","journal-title":"Nat Rev Mol Cell Biol"},{"key":"2025052805012202500_bib87","doi-asserted-by":"publisher","first-page":"807","DOI":"10.1007\/BF01026102","article-title":"Biotransformations in organic solvents: a difference between Gram-positive and Gram-negative bacteria","volume":"11","author":"Harrop","year":"1989","journal-title":"Biotechnol Lett"},{"key":"2025052805012202500_bib88","doi-asserted-by":"publisher","first-page":"324","DOI":"10.1038\/nature10317","article-title":"Molecular chaperones in protein folding and proteostasis","volume":"475","author":"Hartl","year":"2011","journal-title":"Nature"},{"key":"2025052805012202500_bib283_563_252925","doi-asserted-by":"publisher","first-page":"16118","DOI":"10.1038\/s41598-019-52604-9","article-title":"Variation of Burkholderia cenocepacia cell wall morphology and mechanical properties during cystic fibrosis lung infection, assessed by atomic force microscopy","volume":"9","author":"Hassan","year":"2019","journal-title":"Sci Rep"},{"key":"2025052805012202500_bib89","doi-asserted-by":"publisher","first-page":"e0213021","DOI":"10.1128\/mBio.02130-21","article-title":"Chaperone Spy protects outer membrane proteins from folding stress via dynamic complex formation","volume":"12","author":"He","year":"2021","journal-title":"mBio"},{"key":"2025052805012202500_bib90","doi-asserted-by":"publisher","first-page":"4440","DOI":"10.1128\/aem.60.12.4440-4444.1994","article-title":"Adaptation of Pseudomonas putida S12 to ethanol and toluene at the level of fatty acid composition of membranes","volume":"60","author":"Heipieper","year":"1994","journal-title":"Appl Environ Microbiol"},{"key":"2025052805012202500_bib91","doi-asserted-by":"publisher","first-page":"1847","DOI":"10.1128\/aem.58.6.1847-1852.1992","article-title":"Conversion of cis unsaturated fatty acids to trans, a possible mechanism for the protection of phenol-degrading Pseudomonas putida P8 from substrate toxicity","volume":"58","author":"Heipieper","year":"1992","journal-title":"Appl Environ Microbiol"},{"key":"2025052805012202500_bib92","doi-asserted-by":"publisher","first-page":"1563","DOI":"10.1007\/978-3-540-77587-4_108","article-title":"Toxicity of hydrocarbons to microorganisms","volume-title":"Handbook of Hydrocarbon and Lipid Microbiology","author":"Heipieper","year":"2010"},{"key":"2025052805012202500_bib93","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/S0378-1097(03)00792-4","article-title":"The cis-trans isomerase of unsaturated fatty acids in Pseudomonas and Vibrio: biochemistry, molecular biology and physiological function of a unique stress adaptive mechanism","volume":"229","author":"Heipieper","year":"2003","journal-title":"FEMS Microbiol Lett"},{"key":"2025052805012202500_bib94","doi-asserted-by":"publisher","DOI":"10.1099\/ijsem.0.004969","article-title":"Paraburkholderia dioscoreae sp. nov., a novel plant associated growth promotor","volume":"71","author":"Herpell","year":"2021","journal-title":"Int J Syst Evol Microbiol"},{"key":"2025052805012202500_bib95","doi-asserted-by":"crossref","DOI":"10.1007\/978-1-4684-8601-8_21","article-title":"Adaptive responses to oxidative stress: the soxRS and oxyR regulons","volume-title":"Regulation of Gene Expression in Escherichia Coli","author":"Hidalgo","year":"1996"},{"key":"2025052805012202500_bib96","doi-asserted-by":"publisher","first-page":"637","DOI":"10.1039\/b906679a","article-title":"Chemistry and biology of siderophores","volume":"27","author":"Hider","year":"2010","journal-title":"Nat Prod Rep"},{"key":"2025052805012202500_bib97","doi-asserted-by":"publisher","first-page":"5104","DOI":"10.1128\/AEM.68.10.5104-5112.2002","article-title":"Flow cytometry analysis of changes in the DNA content of the polychlorinated biphenyl degrader Comamonas testosteroni TK102: effect of metabolites on cell-cell separation","volume":"68","author":"Hiraoka","year":"2002","journal-title":"Appl Environ Microbiol"},{"key":"2025052805012202500_bib98","doi-asserted-by":"publisher","first-page":"160","DOI":"10.1038\/sj.emboj.7600016","article-title":"Identification of a redox-regulated chaperone network","volume":"23","author":"Hoffmann","year":"2004","journal-title":"EMBO J"},{"key":"2025052805012202500_bib99","doi-asserted-by":"publisher","first-page":"15697","DOI":"10.1074\/jbc.272.25.15697","article-title":"The Escherichia coli SlyD is a metal ion-regulated peptidyl-prolyl cis\/trans-isomerase","volume":"272","author":"Hottenrott","year":"1997","journal-title":"J Biol Chem"},{"key":"2025052805012202500_bib100","doi-asserted-by":"publisher","first-page":"12430","DOI":"10.1074\/jbc.275.17.12430","article-title":"Steady-state kinetic characterization and crystallization of a polychlorinated biphenyl-transforming dioxygenase","volume":"275","author":"Imbeault","year":"2000","journal-title":"J Biol Chem"},{"key":"2025052805012202500_bib101","doi-asserted-by":"publisher","first-page":"755","DOI":"10.1146\/annurev.biochem.77.061606.161055","article-title":"Cellular defenses against superoxide and hydrogen peroxide","volume":"77","author":"Imlay","year":"2008","journal-title":"Annu Rev Biochem"},{"key":"2025052805012202500_bib102","doi-asserted-by":"publisher","first-page":"443","DOI":"10.1038\/nrmicro3032","article-title":"The molecular mechanisms and physiological consequences of oxidative stress: lessons from a model bacterium","volume":"11","author":"Imlay","year":"2013","journal-title":"Nat Rev Microbiol"},{"key":"2025052805012202500_bib103","doi-asserted-by":"publisher","first-page":"1560","DOI":"10.1128\/aem.57.5.1560-1562.1991","article-title":"Pseudomonas putida which can grow in the presence of toluene","volume":"57","author":"Inoue","year":"1991","journal-title":"Appl Environ Microbiol"},{"key":"2025052805012202500_bib282_636_252425","doi-asserted-by":"publisher","first-page":"e0291164","DOI":"10.1371\/journal.pone.0291164","article-title":"Comparative genomics of the proteostasis network in extreme acidophiles","volume":"18","author":"Izquierdo-Fiallo","year":"2023","journal-title":"PLoS ONE"},{"key":"2025052805012202500_bib104","doi-asserted-by":"publisher","first-page":"405","DOI":"10.1111\/pbi.12659","article-title":"The heat-shock protein\/chaperone network and multiple stress resistance","volume":"15","author":"Jacob","year":"2017","journal-title":"Plant Biotechnol J"},{"key":"2025052805012202500_bib105","doi-asserted-by":"publisher","first-page":"271","DOI":"10.1038\/nrmicro.2016.190","article-title":"Cyclic di-GMP: second messenger extraordinaire","volume":"15","author":"Jenal","year":"2017","journal-title":"Nat Rev Microbiol"},{"key":"2025052805012202500_bib106","doi-asserted-by":"publisher","first-page":"824","DOI":"10.1046\/j.1462-2920.2002.00370.x","article-title":"Genomic analysis of the aromatic catabolic pathways from Pseudomonas putida KT2440","volume":"4","author":"Jim\u00e9nez","year":"2002","journal-title":"Environ Microbiol"},{"key":"2025052805012202500_bib107","doi-asserted-by":"publisher","first-page":"93","DOI":"10.1007\/s007920100176","article-title":"A WbpL mutant of Pseudomonas putida DOT-T1E strain, which lacks the O-antigenic side chain of lipopolysaccharides, is tolerant to organic solvent shocks","volume":"5","author":"Junker","year":"2001","journal-title":"Extremophiles"},{"key":"2025052805012202500_bib108","doi-asserted-by":"publisher","first-page":"3246","DOI":"10.1099\/mic.0.2007\/008896-0","article-title":"Overexpressing antioxidant enzymes enhances naphthalene biodegradation in Pseudomonas sp. strain As1","volume":"153","author":"Kang","year":"2007","journal-title":"Microbiology"},{"key":"2025052805012202500_bib109","doi-asserted-by":"publisher","first-page":"5071","DOI":"10.1128\/jb.178.17.5071-5079.1996","article-title":"Three transport systems for the osmoprotectant glycine betaine operate in Bacillus subtilis: characterization of OpuD","volume":"178","author":"Kappes","year":"1996","journal-title":"J Bacteriol"},{"key":"2025052805012202500_bib110","doi-asserted-by":"publisher","first-page":"40","DOI":"10.1007\/s13205-023-03887-3","article-title":"Comparative genomics of seven genomes of genus Idiomarina reveals important halo adaptations and genes for stress response","volume":"14","author":"Kaur","year":"2024","journal-title":"3 Biotech"},{"key":"2025052805012202500_bib111","doi-asserted-by":"publisher","first-page":"209","DOI":"10.1016\/j.cell.2005.05.028","article-title":"Proteome-wide analysis of chaperonin-dependent protein folding in Escherichia coli","volume":"122","author":"Kerner","year":"2005","journal-title":"Cell"},{"key":"2025052805012202500_bib112","doi-asserted-by":"publisher","first-page":"678697","DOI":"10.3389\/fmolb.2021.678697","article-title":"Stress-responsive periplasmic chaperones in bacteria","volume":"8","author":"Kim","year":"2021","journal-title":"Front Mol Biosci"},{"key":"2025052805012202500_bib113","doi-asserted-by":"crossref","first-page":"974","DOI":"10.4014\/jmb.0911.11005","article-title":"Expression of yeast cyclophilin A (Cpr1) provides improved stress tolerance in Escherichia coli","volume":"20","author":"Kim","year":"2010","journal-title":"J Microbiol Biotechnol"},{"key":"2025052805012202500_bib114","doi-asserted-by":"publisher","first-page":"e109755","DOI":"10.15252\/embj.2021109755","article-title":"Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis","volume":"41","author":"Kim","year":"2022","journal-title":"EMBO J"},{"key":"2025052805012202500_bib115","doi-asserted-by":"publisher","first-page":"2907","DOI":"10.1046\/j.1432-1033.2002.02958.x","article-title":"Escherichia coli small heat shock proteins, IbpA and IbpB, protect enzymes from inactivation by heat and oxidants: E. coli small heat shock proteins","volume":"269","author":"Kitagawa","year":"2002","journal-title":"Eur J Biochem"},{"key":"2025052805012202500_bib116","doi-asserted-by":"publisher","first-page":"965","DOI":"10.1515\/hsz-2013-0137","article-title":"Molecular function of the prolyl cis\/trans isomerase and metallochaperone SlyD","volume":"394","author":"Kovermann","year":"2013","journal-title":"Biol Chem"},{"key":"2025052805012202500_bib117","doi-asserted-by":"publisher","first-page":"20180966","DOI":"10.1098\/rsif.2018.0966","article-title":"The molecular chaperone Hsp33 is activated by atmospheric-pressure plasma protecting proteins from aggregation","volume":"16","author":"Krewing","year":"2019","journal-title":"J R Soc Interface"},{"key":"2025052805012202500_bib118","doi-asserted-by":"publisher","first-page":"156373","DOI":"10.1016\/j.scitotenv.2022.156373","article-title":"Mobilization of contaminants: potential for soil remediation and unintended consequences","volume":"839","author":"Kumar","year":"2022","journal-title":"Sci Total Environ"},{"key":"2025052805012202500_bib119","doi-asserted-by":"publisher","first-page":"4666","DOI":"10.1021\/bi9003556","article-title":"Redox-regulated chaperones","volume":"48","author":"Kumsta","year":"2009","journal-title":"Biochemistry"},{"key":"2025052805012202500_bib121","doi-asserted-by":"publisher","first-page":"26","DOI":"10.3389\/fmolb.2017.00026","article-title":"The protein chaperone ClpX targets native and non-native aggregated substrates for remodeling, disassembly, and degradation with ClpP","volume":"4","author":"LaBreck","year":"2017","journal-title":"Front Mol Biosci"},{"key":"2025052805012202500_bib122","doi-asserted-by":"publisher","first-page":"7595","DOI":"10.1128\/jb.179.23.7595-7599.1997","article-title":"Proteins induced in Escherichia coli by benzoic acid","volume":"179","author":"Lambert","year":"1997","journal-title":"J Bacteriol"},{"key":"2025052805012202500_bib123","doi-asserted-by":"publisher","first-page":"3454","DOI":"10.1074\/jbc.M111.304477","article-title":"Conserved YjgF protein family deaminates reactive enamine\/imine intermediates of pyridoxal 5\u2019-phosphate (PLP)-dependent enzyme reactions","volume":"287","author":"Lambrecht","year":"2012","journal-title":"J Biol Chem"},{"key":"2025052805012202500_bib124","doi-asserted-by":"publisher","first-page":"40","DOI":"10.1016\/j.bbamcr.2011.08.015","article-title":"Structure and function of the bacterial AAA protease FtsH","volume":"1823","author":"Langklotz","year":"2012","journal-title":"Biochim Biophys Acta Mol Cell Res"},{"key":"2025052805012202500_bib125","doi-asserted-by":"publisher","first-page":"116769","DOI":"10.1016\/j.envpol.2021.116769","article-title":"Effects of environmental factors and coexisting substrates on PAH degradation and transcriptomic responses of the defined bacterial consortium OPK","volume":"277","author":"Laothamteep","year":"2021","journal-title":"Environ Pollut"},{"key":"2025052805012202500_bib126","doi-asserted-by":"publisher","first-page":"e0351022","DOI":"10.1128\/spectrum.03510-22","article-title":"Trehalose biosynthesis gene otsA protects against stress in the initial infection stage of Burkholderia-bean bug symbiosis","volume":"11","author":"Lee","year":"2023","journal-title":"Microbiol Spectr"},{"key":"2025052805012202500_bib128","doi-asserted-by":"publisher","first-page":"e0154233","DOI":"10.1371\/journal.pone.0154233","article-title":"Proteogenomic characterization of monocyclic aromatic hydrocarbon degradation pathways in the aniline-degrading bacterium Burkholderia sp. K24","volume":"11","author":"Lee","year":"2016","journal-title":"PLoS One"},{"key":"2025052805012202500_bib127","doi-asserted-by":"publisher","first-page":"229","DOI":"10.1016\/S0092-8674(03)00807-9","article-title":"The structure of ClpB: a molecular chaperone that rescues proteins from an aggregated state","volume":"115","author":"Lee","year":"2003","journal-title":"Cell"},{"key":"2025052805012202500_bib129","doi-asserted-by":"publisher","first-page":"1251","DOI":"10.1099\/ijsem.0.002661","article-title":"Paraburkholderia aromaticivorans sp. nov., an aromatic hydrocarbon-degrading bacterium, isolated from gasoline-contaminated soil","volume":"68","author":"Lee","year":"2018","journal-title":"Int J Syst Evol Microbiol"},{"key":"2025052805012202500_bib130","doi-asserted-by":"publisher","first-page":"860","DOI":"10.1038\/s41598-018-36165-x","article-title":"Biodegradation of naphthalene, BTEX, and aliphatic hydrocarbons by Paraburkholderia aromaticivorans BN5 isolated from petroleum-contaminated soil","volume":"9","author":"Lee","year":"2019","journal-title":"Sci Rep"},{"key":"2025052805012202500_bib131","doi-asserted-by":"publisher","first-page":"365","DOI":"10.1007\/s00203-016-1310-9","article-title":"Stress responses of Acinetobacter strain Y during phenol degradation","volume":"199","author":"Lin","year":"2017","journal-title":"Arch Microbiol"},{"key":"2025052805012202500_bib132","doi-asserted-by":"publisher","first-page":"1133","DOI":"10.1080\/09593330.2015.1102333","article-title":"Halotolerance and effect of salt on hydrophobicity in hydrocarbon-degrading bacteria","volume":"37","author":"Longang","year":"2016","journal-title":"Environ Technol"},{"key":"2025052805012202500_bib280_684_250825","doi-asserted-by":"publisher","first-page":"1321","DOI":"10.1128\/JB.01782-08","article-title":"Surface location of individual residues of SlpA provides insight into the Lactobacillus brevis S-layer","volume":"192","author":"L\u00f6w","year":"2010","journal-title":"J Bacteriol"},{"key":"2025052805012202500_bib133","doi-asserted-by":"publisher","first-page":"5873","DOI":"10.1007\/s00253-020-10672-2","article-title":"Time-course transcriptome analysis reveals the mechanisms of Burkholderia sp. adaptation to high phenol concentrations","volume":"104","author":"Ma","year":"2020","journal-title":"Appl Microbiol Biotechnol"},{"key":"2025052805012202500_bib134","first-page":"BE01","article-title":"Bacterial heat shock protein activity","volume":"10","author":"Maleki","year":"2016","journal-title":"J Clin Diagn Res"},{"key":"2025052805012202500_bib135","doi-asserted-by":"publisher","first-page":"e0031223","DOI":"10.1128\/spectrum.00312-23","article-title":"HtpG is a metal-dependent chaperone which assists the DnaK\/DnaJ\/GrpE chaperone system of Mycobacterium tuberculosis via direct association with DnaJ2","volume":"11","author":"Mangla","year":"2023","journal-title":"Microbiol Spectr"},{"key":"2025052805012202500_bib136","doi-asserted-by":"publisher","first-page":"649","DOI":"10.1590\/S1517-83822010000300016","article-title":"Multiple responses of Gram-positive and Gram-negative bacteria to mixture of hydrocarbons","volume":"41","author":"Marilena-L\u0103z\u0103roaie","year":"2010","journal-title":"Braz J Microbiol"},{"key":"2025052805012202500_bib137","doi-asserted-by":"publisher","first-page":"289","DOI":"10.1007\/s00203-007-0247-4","article-title":"Chlorobenzoate inhibits growth and induces stress proteins in the PCB-degrading bacterium Burkholderia xenovorans LB400","volume":"188","author":"Mart\u00ednez","year":"2007","journal-title":"Arch Microbiol"},{"key":"2025052805012202500_bib138","doi-asserted-by":"publisher","first-page":"103025","DOI":"10.1016\/j.copbio.2023.103025","article-title":"Pseudomonas putida as a synthetic biology chassis and a metabolic engineering platform","volume":"85","author":"Mart\u00ednez-Garc\u00eda","year":"2024","journal-title":"Curr Opin Biotechnol"},{"key":"2025052805012202500_bib139","doi-asserted-by":"publisher","first-page":"169","DOI":"10.1007\/978-3-030-18768-2_6","article-title":"The periplasmic chaperones Skp and SurA","volume":"92","author":"Mas","year":"2019","journal-title":"Subcell Biochem"},{"key":"2025052805012202500_bib140","doi-asserted-by":"publisher","first-page":"178","DOI":"10.1007\/BF01923511","article-title":"Proteases and protein degradation in Escherichia coli","volume":"48","author":"Maurizi","year":"1992","journal-title":"Experientia"},{"key":"2025052805012202500_bib141","doi-asserted-by":"publisher","first-page":"670","DOI":"10.1007\/s00018-004-4464-6","article-title":"Hsp70 chaperones: cellular functions and molecular mechanism","volume":"62","author":"Mayer","year":"2005","journal-title":"CMLS, Cell Mol Life Sci"},{"key":"2025052805012202500_bib142","doi-asserted-by":"publisher","first-page":"103128","DOI":"10.1016\/j.redox.2024.103128","article-title":"Functional diversity of YbbN\/CnoX proteins: insights from a comparative analysis of three thioredoxin-like oxidoreductases from Pseudomonas aeruginosa, Xylella fastidiosa and Escherichia coli","volume":"72","author":"Meireles\u00a0D\u00a0de","year":"2024","journal-title":"Redox Biol"},{"key":"2025052805012202500_bib143","doi-asserted-by":"publisher","first-page":"e17583","DOI":"10.1371\/journal.pone.0017583","article-title":"The homogentisate and homoprotocatechuate central pathways Are involved in 3- and 4-hydroxyphenylacetate degradation by Burkholderia xenovorans LB400","volume":"6","author":"M\u00e9ndez","year":"2011","journal-title":"PLoS One"},{"key":"2025052805012202500_bib144","doi-asserted-by":"publisher","first-page":"154587","DOI":"10.1016\/j.scitotenv.2022.154587","article-title":"Aerobic biotransformation of 6:2 fluorotelomer sulfonate by Dietzia aurantiaca J3 under sulfur-limiting conditions","volume":"829","author":"M\u00e9ndez","year":"2022","journal-title":"Sci Total Environ"},{"key":"2025052805012202500_bib145","doi-asserted-by":"publisher","first-page":"7","DOI":"10.1186\/s40659-022-00373-7","article-title":"The OxyR and SoxR transcriptional regulators are involved in a broad oxidative stress response in Paraburkholderia xenovorans LB400","volume":"55","author":"M\u00e9ndez","year":"2022","journal-title":"Biol Res"},{"key":"2025052805012202500_bib146","article-title":"Molecular mechanisms of the adaptive response of Burkholderia xenovorans LB400 to oxidative stress induced by oxidizing compounds and the metabolism of aromatic compounds","author":"M\u00e9ndez","year":"2017"},{"key":"2025052805012202500_bib147","doi-asserted-by":"publisher","first-page":"32358","DOI":"10.1073\/pnas.2016380117","article-title":"Hierarchical routing in carbon metabolism favors iron-scavenging strategy in iron-deficient soil Pseudomonas species","volume":"117","author":"Mendonca","year":"2020","journal-title":"Proc Natl Acad Sci USA"},{"key":"2025052805012202500_bib148","doi-asserted-by":"publisher","first-page":"309","DOI":"10.1007\/BF00141604","article-title":"Ornibactin production and transport properties in strains of Burkholderia vietnamiensis and Burkholderia cepacia (formerly Pseudomonas cepacia)","volume":"8","author":"Meyer","year":"1995","journal-title":"Biometals"},{"key":"2025052805012202500_bib149","doi-asserted-by":"publisher","first-page":"851","DOI":"10.1038\/s41467-021-21120-8","article-title":"Mechanism of the small ATP-independent chaperone Spy is substrate specific","volume":"12","author":"Mitra","year":"2021","journal-title":"Nat Commun"},{"key":"2025052805012202500_bib150","doi-asserted-by":"publisher","first-page":"e1004163","DOI":"10.1371\/journal.pgen.1004163","article-title":"A long-chain flavodoxin protects Pseudomonas aeruginosa from oxidative stress and host bacterial clearance","volume":"10","author":"Moyano","year":"2014","journal-title":"PLoS Genet"},{"key":"2025052805012202500_bib151","doi-asserted-by":"publisher","first-page":"57","DOI":"10.1007\/BF03174971","article-title":"Cellular fatty acid patterns in Pseudomonas sp. CF600 during catechol and phenol degradation in media supplemented with glucose as an additional carbon source","volume":"56","author":"Mrozik","year":"2006","journal-title":"Ann Microbiol"},{"key":"2025052805012202500_bib152","doi-asserted-by":"publisher","first-page":"849","DOI":"10.1046\/j.1365-2958.2003.03871.x","article-title":"Escherichia coli Hsp31 functions as a holding chaperone that cooperates with the DnaK-DnaJ-GrpE system in the management of protein misfolding under severe stress conditions: cellular function of Hsp31","volume":"51","author":"Mujacic","year":"2004","journal-title":"Mol Microbiol"},{"key":"2025052805012202500_bib153","doi-asserted-by":"publisher","first-page":"644","DOI":"10.1093\/gbe\/evz023","article-title":"PDZ domains across the microbial world: molecular link to the proteases, stress response, and protein synthesis","volume":"11","author":"Muley","year":"2019","journal-title":"Genome Biol Evol"},{"key":"2025052805012202500_bib154","doi-asserted-by":"publisher","first-page":"5804","DOI":"10.1038\/ncomms6804","article-title":"Activation of RidA chaperone function by N-chlorination","volume":"5","author":"M\u00fcller","year":"2014","journal-title":"Nat Commun"},{"key":"2025052805012202500_bib155","doi-asserted-by":"publisher","DOI":"10.1093\/femsre\/fuaa058","article-title":"The protective role of PHB and its degradation products against stress situations in bacteria","volume":"45","author":"M\u00fcller-Santos","year":"2021","journal-title":"FEMS Microbiol Rev"},{"key":"2025052805012202500_bib281_191_251225","doi-asserted-by":"publisher","first-page":"12489","DOI":"10.3390\/ijms252312489","article-title":"The thioredoxin fold protein (TFP2) from extreme acidophilic Leptospirillum sp.\u00a0CF-1 is a chaperedoxin-like protein that prevents the aggregation of proteins under oxidative stress","volume-title":"Int J Mol Sci","author":"Mu\u00f1oz-Villagr\u00e1n","year":"2024"},{"key":"2025052805012202500_bib156","doi-asserted-by":"publisher","first-page":"428","DOI":"10.2478\/s11756-014-0337-0","article-title":"The adaptation responses of bacterial cytoplasmic membrane fluidity in the presence of environmental stress factors\u2014polychlorinated biphenyls and 3-chlorobenzoic acid","volume":"69","author":"Mur\u00ednov\u00e1","year":"2014","journal-title":"Biologia (Bratisl)"},{"key":"2025052805012202500_bib157","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1155\/2014\/873081","article-title":"Response mechanisms of bacterial degraders to environmental contaminants on the level of cell walls and cytoplasmic membrane","volume":"2014","author":"Mur\u00ednov\u00e1","year":"2014","journal-title":"Int J Microbiol"},{"key":"2025052805012202500_bib158","doi-asserted-by":"publisher","DOI":"10.1128\/JB.00606-16","article-title":"pqiABC and yebST, Putative mce operons of Escherichia coli, encode transport pathways and contribute to membrane integrity","volume":"199","author":"Nakayama","year":"2017","journal-title":"J Bacteriol"},{"key":"2025052805012202500_bib159","doi-asserted-by":"publisher","first-page":"4497","DOI":"10.1128\/JB.187.13.4497-4504.2005","article-title":"Phenylacetate catabolism in Rhodococcus sp. strain RHA1: a central pathway for degradation of aromatic compounds","volume":"187","author":"Navarro-Llorens","year":"2005","journal-title":"J Bacteriol"},{"key":"2025052805012202500_bib160","doi-asserted-by":"publisher","first-page":"26723","DOI":"10.1074\/jbc.270.45.26723","article-title":"Siderophores: structure and function of microbial iron transport compounds","volume":"270","author":"Neilands","year":"1995","journal-title":"J Biol Chem"},{"key":"2025052805012202500_bib161","doi-asserted-by":"publisher","first-page":"e00754","DOI":"10.1128\/JB.00754-18","article-title":"Proteomic analysis of the Pseudomonas aeruginosa iron starvation response reveals PrrF small regulatory RNA-dependent iron regulation of twitching motility, amino acid metabolism, and zinc homeostasis proteins","volume":"201","author":"Nelson","year":"2019","journal-title":"J Bacteriol"},{"key":"2025052805012202500_bib162","doi-asserted-by":"publisher","first-page":"163","DOI":"10.1007\/s00792-005-0431-x","article-title":"Cells of Pseudomonas putida and Enterobacter sp. adapt to toxic organic compounds by increasing their size","volume":"9","author":"Neumann","year":"2005","journal-title":"Extremophiles"},{"key":"2025052805012202500_bib163","doi-asserted-by":"publisher","first-page":"181","DOI":"10.1007\/s10532-022-10012-3","article-title":"Metaproteomic and gene expression analysis of interspecies interactions in a PAH-degrading synthetic microbial consortium constructed with the key microbes of a natural consortium","volume":"34","author":"Nieto","year":"2023","journal-title":"Biodegradation"},{"key":"2025052805012202500_bib164","doi-asserted-by":"publisher","first-page":"1751","DOI":"10.1038\/s41396-020-00884-9","article-title":"Reconfiguration of metabolic fluxes in Pseudomonas putida as a response to sub-lethal oxidative stress","volume":"15","author":"Nikel","year":"2021","journal-title":"ISME J"},{"key":"2025052805012202500_bib165","doi-asserted-by":"publisher","first-page":"915","DOI":"10.1016\/j.bbabio.2014.11.012","article-title":"Organization, function and substrates of the essential Clp protease system in plastids","volume":"1847","author":"Nishimura","year":"2015","journal-title":"Biochim Biophys Acta Bioenerget"},{"key":"2025052805012202500_bib166","doi-asserted-by":"publisher","first-page":"279","DOI":"10.2323\/jgam.47.279","article-title":"Bacterial degradation of aromatic compounds via angular dioxygenation","volume":"47","author":"Nojiri","year":"2001","journal-title":"J Gen Appl Microbiol"},{"key":"2025052805012202500_bib167","doi-asserted-by":"publisher","first-page":"124767","DOI":"10.1016\/j.biortech.2021.124767","article-title":"The underexplored role of diverse stress factors in microbial biopolymer synthesis","volume":"326","author":"Obruca","year":"2021","journal-title":"Bioresour Technol"},{"key":"2025052805012202500_bib168","doi-asserted-by":"publisher","first-page":"1365","DOI":"10.1007\/s00253-015-7162-4","article-title":"Evaluation of 3-hydroxybutyrate as an enzyme-protective agent against heating and oxidative damage and its potential role in stress response of poly(3-hydroxybutyrate) accumulating cells","volume":"100","author":"Obruca","year":"2016","journal-title":"Appl Microbiol Biotechnol"},{"key":"2025052805012202500_bib169","doi-asserted-by":"publisher","first-page":"4795","DOI":"10.1007\/s00253-020-10568-1","article-title":"Novel unexpected functions of PHA granules","volume":"104","author":"Obruca","year":"2020","journal-title":"Appl Microbiol Biotechnol"},{"key":"2025052805012202500_bib170","doi-asserted-by":"publisher","first-page":"4533","DOI":"10.1128\/JB.182.16.4533-4544.2000","article-title":"Role of the Pseudomonas aeruginosa oxyR-recG operon in oxidative stress defense and DNA repair: oxyR-dependent regulation of katB-ankB, ahpB, and ahpC-ahpF","volume":"182","author":"Ochsner","year":"2000","journal-title":"J Bacteriol"},{"key":"2025052805012202500_bib171","doi-asserted-by":"publisher","first-page":"6419","DOI":"10.1073\/pnas.95.11.6419","article-title":"Molecular characterization of the phenylacetic acid catabolic pathway in Pseudomonas putida U: the phenylacetyl-CoA catabolon","volume":"95","author":"Olivera","year":"1998","journal-title":"Proc Natl Acad Sci USA"},{"key":"2025052805012202500_bib172","doi-asserted-by":"publisher","first-page":"42414","DOI":"10.1007\/s11356-021-13647-6","article-title":"Transcriptomic analysis of Burkholderia cenocepacia CEIB S5-2 during methyl parathion degradation","volume":"28","author":"Ortiz-Hern\u00e1ndez","year":"2021","journal-title":"Environ Sci Pollut Res"},{"key":"2025052805012202500_bib173","doi-asserted-by":"publisher","first-page":"11394","DOI":"10.1073\/pnas.95.19.11394","article-title":"Presence of a gene encoding choline sulfatase in Sinorhizobium meliloti bet operon: choline-O-sulfate is metabolized into glycine betaine","volume":"95","author":"Oster\u00e5s","year":"1998","journal-title":"Proc Natl Acad Sci USA"},{"key":"2025052805012202500_bib174","doi-asserted-by":"publisher","first-page":"6607","DOI":"10.1128\/AEM.01129-06","article-title":"Coping with polychlorinated biphenyl (PCB) toxicity: physiological and genome-wide responses of Burkholderia xenovorans LB400 to PCB-mediated stress","volume":"72","author":"Parnell","year":"2006","journal-title":"Appl Environ Microbiol"},{"key":"2025052805012202500_bib175","doi-asserted-by":"publisher","first-page":"134","DOI":"10.1186\/s12934-019-1178-x","article-title":"Fructose metabolism in Chromohalobacter salexigens: interplay between the Embden-Meyerhof-Parnas and Entner-Doudoroff pathways","volume":"18","author":"Pastor","year":"2019","journal-title":"Microb Cell Fact"},{"key":"2025052805012202500_bib176","doi-asserted-by":"publisher","first-page":"107698","DOI":"10.1016\/j.biotechadv.2021.107698","article-title":"Stress response in Rhodococcus strains","volume":"53","author":"P\u00e1tek","year":"2021","journal-title":"Biotechnol Adv"},{"key":"2025052805012202500_bib177","doi-asserted-by":"publisher","first-page":"37","DOI":"10.1128\/JB.01122-07","article-title":"Roles of ring-hydroxylating dioxygenases in styrene and benzene catabolism in Rhodococcus jostii RHA1","volume":"190","author":"Patrauchan","year":"2008","journal-title":"J Bacteriol"},{"key":"2025052805012202500_bib178","doi-asserted-by":"publisher","first-page":"641","DOI":"10.1007\/s00203-011-0705-x","article-title":"Genomic analysis of the phenylacetyl-CoA pathway in Burkholderia xenovorans LB400","volume":"193","author":"Patrauchan","year":"2011","journal-title":"Arch Microbiol"},{"key":"2025052805012202500_bib179","doi-asserted-by":"publisher","first-page":"372","DOI":"10.1002\/pro.340","article-title":"Pyrroline-5-carboxylate synthase and proline biosynthesis: from osmotolerance to rare metabolic disease: P5CS and proline biosynthesis","volume":"19","author":"P\u00e9rez-Arellano","year":"2010","journal-title":"Protein Sci"},{"key":"2025052805012202500_bib180","doi-asserted-by":"publisher","first-page":"1091","DOI":"10.1111\/j.1462-2920.2011.02613.x","article-title":"Genomic analysis of the potential for aromatic compounds biodegradation in Burkholderiales: degradation of aromatic compounds in Burkholderiales","volume":"14","author":"P\u00e9rez-Pantoja","year":"2012","journal-title":"Environ Microbiol"},{"key":"2025052805012202500_bib181","first-page":"121","article-title":"Bacterial metabolism of polychlorinated biphenyls","volume":"15","author":"Pieper","year":"2008","journal-title":"J Mol Microbiol Biotechnol"},{"key":"2025052805012202500_bib182","doi-asserted-by":"publisher","first-page":"253","DOI":"10.1111\/j.1751-7915.2009.00084.x","article-title":"Cyclopropane fatty acids are involved in organic solvent tolerance but not in acid stress resistance in Pseudomonas putida DOT-T1E: role of cyclopropane synthase in solvent tolerance","volume":"2","author":"Pini","year":"2009","journal-title":"Microb Biotechnol"},{"key":"2025052805012202500_bib183","doi-asserted-by":"publisher","first-page":"1129","DOI":"10.1128\/aem.62.3.1129-1132.1996","article-title":"Cell envelope changes in solvent-tolerant and solvent-sensitive Pseudomonas putida strains following exposure to o-xylene","volume":"62","author":"Pinkart","year":"1996","journal-title":"Appl Environ Microbiol"},{"key":"2025052805012202500_bib184","doi-asserted-by":"publisher","first-page":"109","DOI":"10.1016\/S0167-7799(00)01542-0","article-title":"Redox-operated genetic switches: the SoxR and OxyR transcription factors","volume":"19","author":"Pomposiello","year":"2001","journal-title":"Trends Biotechnol"},{"key":"2025052805012202500_bib185","doi-asserted-by":"publisher","first-page":"509","DOI":"10.1016\/j.enzmictec.2011.04.021","article-title":"Antioxidant compounds improved PCB-degradation by Burkholderia xenovorans strain LB400","volume":"49","author":"Ponce","year":"2011","journal-title":"Enzyme Microb Technol"},{"key":"2025052805012202500_bib186","doi-asserted-by":"publisher","first-page":"237","DOI":"10.1038\/nrm3542","article-title":"Diversity in the origins of proteostasis networks\u2013a driver for protein function in evolution","volume":"14","author":"Powers","year":"2013","journal-title":"Nat Rev Mol Cell Biol"},{"key":"2025052805012202500_bib187","doi-asserted-by":"publisher","first-page":"505","DOI":"10.1007\/s00248-010-9650-5","article-title":"Transcriptional response of Rhodococcus aetherivorans I24 to polychlorinated biphenyl-contaminated sediments","volume":"60","author":"Puglisi","year":"2010","journal-title":"Microb Ecol"},{"key":"2025052805012202500_bib188","doi-asserted-by":"publisher","first-page":"4011","DOI":"10.1002\/1873-3468.13245","article-title":"The role of chaperones in iron-sulfur cluster biogenesis","volume":"592","author":"Puglisi","year":"2018","journal-title":"FEBS Lett"},{"key":"2025052805012202500_bib190","doi-asserted-by":"publisher","first-page":"82","DOI":"10.1186\/s12915-016-0300-3","article-title":"Molecular insights into substrate recognition and catalytic mechanism of the chaperone and FKBP peptidyl-prolyl isomerase SlyD","volume":"14","author":"Quistgaard","year":"2016","journal-title":"BMC Biol"},{"key":"2025052805012202500_bib191","doi-asserted-by":"publisher","first-page":"743","DOI":"10.1146\/annurev.micro.56.012302.161038","article-title":"Mechanisms of solvent tolerance in Gram-negative bacteria","volume":"56","author":"Ramos","year":"2002","journal-title":"Annu Rev Microbiol"},{"key":"2025052805012202500_bib192","doi-asserted-by":"publisher","first-page":"178","DOI":"10.1016\/j.jmb.2008.12.009","article-title":"Distinct activities of Escherichia coli small heat shock proteins IbpA and IbpB promote efficient protein disaggregation","volume":"386","author":"Ratajczak","year":"2009","journal-title":"J Mol Biol"},{"key":"2025052805012202500_bib193","doi-asserted-by":"publisher","first-page":"203","DOI":"10.1016\/j.molcel.2017.12.021","article-title":"Maintaining a healthy proteome during oxidative stress","volume":"69","author":"Reichmann","year":"2018","journal-title":"Mol Cell"},{"key":"2025052805012202500_bib195","doi-asserted-by":"publisher","first-page":"12","DOI":"10.1186\/s40659-024-00491-4","article-title":"The long-chain flavodoxin FldX1 improves the biodegradation of 4-hydroxyphenylacetate and 3-hydroxyphenylacetate and counteracts the oxidative stress associated to aromatic catabolism in Paraburkholderia xenovorans","volume":"57","author":"Rodr\u00edguez-Castro","year":"2024","journal-title":"Biol Res"},{"key":"2025052805012202500_bib196","doi-asserted-by":"publisher","first-page":"e0221881","DOI":"10.1371\/journal.pone.0221881","article-title":"Long-chain flavodoxin FldX1 improves Paraburkholderia xenovorans LB400 tolerance to oxidative stress caused by paraquat and H2O2","volume":"14","author":"Rodr\u00edguez-Castro","year":"2019","journal-title":"PLoS One"},{"key":"2025052805012202500_bib197","doi-asserted-by":"publisher","first-page":"493","DOI":"10.1111\/1751-7915.12029","article-title":"Trends in bacterial trehalose metabolism and significant nodes of metabolic pathway in the direction of trehalose accumulation: trehalose metabolism in bacteria","volume":"6","author":"Ruhal","year":"2013","journal-title":"Microb Biotechnol"},{"key":"2025052805012202500_bib198","doi-asserted-by":"publisher","first-page":"4124","DOI":"10.1074\/jbc.M708294200","article-title":"Dynamics of trigger factor interaction with translating ribosomes","volume":"283","author":"Rutkowska","year":"2008","journal-title":"J Biol Chem"},{"key":"2025052805012202500_bib199","doi-asserted-by":"publisher","first-page":"1405","DOI":"10.1134\/S0006297913130038","article-title":"Molecular chaperone GroEL\/ES: unfolding and refolding processes","volume":"78","author":"Ryabova","year":"2013","journal-title":"Biochem Moscow"},{"key":"2025052805012202500_bib200","doi-asserted-by":"publisher","first-page":"1543","DOI":"10.1007\/s00253-010-2575-6","article-title":"Mineralization of PCBs by the genetically modified strain Cupriavidus necator JMS34 and its application for bioremediation of PCBs in soil","volume":"87","author":"Saavedra","year":"2010","journal-title":"Appl Microbiol Biotechnol"},{"key":"2025052805012202500_bib201","doi-asserted-by":"publisher","first-page":"106","DOI":"10.1016\/S1389-1723(02)80128-1","article-title":"Cloning of an intracellular D(\u2212)-3-hydroxybutyrate-oligomer hydrolase gene from Ralstonia eutropha H16 and identification of the active site serine residue by site-directed mutagenesis","volume":"94","author":"Saegusa","year":"2002","journal-title":"J Biosci Bioeng"},{"key":"2025052805012202500_bib202","doi-asserted-by":"publisher","first-page":"3","DOI":"10.1007\/978-1-4939-7795-6_1","article-title":"Re-factoring glycolytic genes for targeted engineering of catabolism in Gram-negative bacteria","volume":"1772","author":"S\u00e1nchez-Pascuala","year":"2018","journal-title":"Methods Mol Biol"},{"key":"2025052805012202500_bib203","doi-asserted-by":"publisher","first-page":"855","DOI":"10.1007\/s00018-005-5514-4","article-title":"Flavodoxins: sequence, folding, binding, function and beyond","volume":"63","author":"Sancho","year":"2006","journal-title":"Cell Mol Life Sci"},{"key":"2025052805012202500_bib204","doi-asserted-by":"publisher","first-page":"E2654","DOI":"10.1073\/pnas.1620646114","article-title":"Bacterial proteostasis balances energy and chaperone utilization efficiently","volume":"114","author":"Santra","year":"2017","journal-title":"Proc Natl Acad Sci USA"},{"key":"2025052805012202500_bib205","doi-asserted-by":"publisher","first-page":"12","DOI":"10.1007\/s00792-023-01326-y","article-title":"Effects of small heat shock proteins from thermotolerant bacteria on the stress resistance of Escherichia coli to temperature, pH, and hyperosmolarity","volume":"28","author":"Sato","year":"2024","journal-title":"Extremophiles"},{"key":"2025052805012202500_bib206","doi-asserted-by":"publisher","first-page":"429","DOI":"10.3389\/fgene.2014.00429","article-title":"Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental species","volume":"5","author":"Sawana","year":"2014","journal-title":"Front Genet"},{"key":"2025052805012202500_bib207","doi-asserted-by":"publisher","first-page":"e00855","DOI":"10.1002\/mbo3.855","article-title":"Cyclohexane, naphthalene, and diesel fuel increase oxidative stress, CYP153, sodA, and recA gene expression in Rhodococcus erythropolis","volume":"8","author":"Sazykin","year":"2019","journal-title":"Microbiologyopen"},{"key":"2025052805012202500_bib208","first-page":"239","article-title":"Acute toxicity of (chloro-)catechols and (chloro-)catechol-copper combinations in Escherichia coli corresponds to their membrane toxicity in vitro","volume":"20","author":"Schweigert","year":"2001","journal-title":"Environ Toxicol Chem"},{"key":"2025052805012202500_bib209","doi-asserted-by":"publisher","first-page":"1973","DOI":"10.1111\/j.1462-2920.2010.02336.x","article-title":"A blueprint of ectoine metabolism from the genome of the industrial producer Halomonas elongata DSM 2581 T: ectoine metabolism from the Halomonas genome","volume":"13","author":"Schwibbert","year":"2011","journal-title":"Environ Microbiol"},{"key":"2025052805012202500_bib210","doi-asserted-by":"publisher","first-page":"15701","DOI":"10.1074\/jbc.275.21.15701","article-title":"Identification of a serine hydrolase as a key determinant in the microbial degradation of polychlorinated biphenyls","volume":"275","author":"Seah","year":"2000","journal-title":"J Biol Chem"},{"key":"2025052805012202500_bib211","doi-asserted-by":"publisher","first-page":"3548","DOI":"10.1128\/JB.183.12.3548-3555.2001","article-title":"Dehalogenation, denitration, dehydroxylation, and angular attack on substituted biphenyls and related compounds by a biphenyl dioxygenase","volume":"183","author":"Seeger","year":"2001","journal-title":"J Bacteriol"},{"key":"2025052805012202500_bib212","doi-asserted-by":"publisher","first-page":"5045","DOI":"10.1128\/AEM.69.9.5045-5050.2003","article-title":"Biotransformation of natural and synthetic isoflavonoids by two recombinant microbial enzymes","volume":"69","author":"Seeger","year":"2003","journal-title":"Appl Environ Microbiol"},{"key":"2025052805012202500_bib214","doi-asserted-by":"publisher","first-page":"35","DOI":"10.1111\/j.1574-6968.1993.tb06070.x","article-title":"Phosphate-starvation induced changes in Thiobacillus ferrooxidans","volume":"108","author":"Seeger","year":"1993","journal-title":"FEMS Microbiol Lett"},{"key":"2025052805012202500_bib213","doi-asserted-by":"publisher","first-page":"37","DOI":"10.1111\/j.1574-6976.1993.tb00264.x","article-title":"Response of Thiobacillus ferrooxidans to phosphate limitation","volume":"11","author":"Seeger","year":"1993","journal-title":"FEMS Microbiol Rev"},{"key":"2025052805012202500_bib215","article-title":"Recombinant PCB-degrading bacterium, product for bioremediation and method of application","author":"Seeger","year":"2011"},{"key":"2025052805012202500_bib216","doi-asserted-by":"publisher","first-page":"259","DOI":"10.1111\/j.1574-6968.1995.tb07894.x","article-title":"Degradation of chlorobiphenyls catalyzed by the bph-encoded biphenyl-2,3-dioxygenase and biphenyl-2,3-dihydrodiol-2,3-dehydrogenase of Pseudomonas sp. LB400","volume":"133","author":"Seeger","year":"1995","journal-title":"FEMS Microbiol Lett"},{"key":"2025052805012202500_bib217","doi-asserted-by":"publisher","first-page":"3614","DOI":"10.1128\/AEM.65.8.3614-3621.1999","article-title":"Regiospecificity of dioxygenation of di- to pentachlorobiphenyls and their degradation to chlorobenzoates by the bph-encoded catabolic pathway of Burkholderia sp. strain LB400","volume":"65","author":"Seeger","year":"1999","journal-title":"Appl Environ Microbiol"},{"key":"2025052805012202500_bib218","article-title":"Biodegradation of polychlorobiphenyls: catabolic capabilities of the upper pathway encoded by the bph locus of Pseudomonas sp. LB400 and construction of novel degrading strains","author":"Seeger","year":"1996"},{"key":"2025052805012202500_bib219","doi-asserted-by":"publisher","first-page":"5937","DOI":"10.1128\/JB.187.17.5937-5945.2005","article-title":"Proteomic analysis reveals the participation of energy- and stress-related proteins in the response of Pseudomonas putida DOT-T1E to toluene","volume":"187","author":"Segura","year":"2005","journal-title":"J Bacteriol"},{"key":"2025052805012202500_bib220","doi-asserted-by":"publisher","first-page":"835","DOI":"10.1111\/1462-2920.15491","article-title":"Proteomic response of the marine ammonia-oxidising archaeon Nitrosopumilus maritimus to iron limitation reveals strategies to compensate for nutrient scarcity","volume":"24","author":"Shafiee","year":"2022","journal-title":"Environ Microbiol"},{"key":"2025052805012202500_bib222","doi-asserted-by":"publisher","first-page":"201","DOI":"10.1128\/mr.59.2.201-222.1995","article-title":"Mechanisms of membrane toxicity of hydrocarbons","volume":"59","author":"Sikkema","year":"1995","journal-title":"Microbiol Rev"},{"key":"2025052805012202500_bib223","doi-asserted-by":"publisher","first-page":"2986","DOI":"10.1128\/jb.174.9.2986-2992.1992","article-title":"Effects of the membrane action of tetralin on the functional and structural properties of artificial and bacterial membranes","volume":"174","author":"Sikkema","year":"1992","journal-title":"J Bacteriol"},{"key":"2025052805012202500_bib224","doi-asserted-by":"publisher","first-page":"6758","DOI":"10.1128\/JB.00590-08","article-title":"Clp and Lon proteases occupy distinct subcellular positions in Bacillus subtilis","volume":"190","author":"Simmons","year":"2008","journal-title":"J Bacteriol"},{"key":"2025052805012202500_bib225","doi-asserted-by":"publisher","first-page":"1118","DOI":"10.4014\/jmb.1403.03006","article-title":"Hsp20, a small heat shock protein of Deinococcus radiodurans, confers tolerance to hydrogen peroxide in Escherichia coli","volume":"24","author":"Singh","year":"2014","journal-title":"J Microbiol Biotechnol"},{"key":"2025052805012202500_bib227","doi-asserted-by":"publisher","first-page":"49","DOI":"10.1111\/j.1574-6976.2002.tb00598.x","article-title":"Bacterial osmoadaptation: the role of osmolytes in bacterial stress and virulence","volume":"26","author":"Sleator","year":"2002","journal-title":"FEMS Microbiol Rev"},{"key":"2025052805012202500_bib228","doi-asserted-by":"publisher","first-page":"209","DOI":"10.1111\/j.1574-6968.2000.tb09106.x","article-title":"The role of antioxidant enzymes in response of Escherichia coli to osmotic upshift","volume":"186","author":"Smirnova","year":"2000","journal-title":"FEMS Microbiol Lett"},{"key":"2025052805012202500_bib229","doi-asserted-by":"publisher","first-page":"742","DOI":"10.3389\/fmicb.2015.00742","article-title":"NADPH-generating systems in bacteria and archaea","volume":"6","author":"Spaans","year":"2015","journal-title":"Front Microbiol"},{"key":"2025052805012202500_bib230","doi-asserted-by":"crossref","first-page":"2541","DOI":"10.1002\/pro.5560071207","article-title":"The crystal structure of NADPH:ferredoxin reductase from Azotobacter vinelandii","volume":"7","author":"Sridhar","year":"1998","journal-title":"Protein Sci"},{"key":"2025052805012202500_bib231","doi-asserted-by":"publisher","first-page":"1697","DOI":"10.1007\/s12088-024-01222-9","article-title":"Characterization of crude oil degrading marine bacterium Bacillus licheniformis","volume":"64","author":"Srimathi","year":"2024","journal-title":"Ind J Microbiol"},{"key":"2025052805012202500_bib232","doi-asserted-by":"publisher","first-page":"e0034521","DOI":"10.1128\/spectrum.00345-21","article-title":"Functional genetic diversity and plant growth promoting potential of polyphosphate accumulating bacteria in soil","volume":"10","author":"Srivastava","year":"2022","journal-title":"Microbiol Spectr"},{"key":"2025052805012202500_bib233","doi-asserted-by":"publisher","first-page":"1333","DOI":"10.1038\/ismej.2014.219","article-title":"Is there a common water-activity limit for the three domains of life?","volume":"9","author":"Stevenson","year":"2015","journal-title":"ISME J"},{"key":"2025052805012202500_bib234","doi-asserted-by":"publisher","first-page":"e2105195118","DOI":"10.1073\/pnas.2105195118","article-title":"Structural basis for potassium transport in prokaryotes by KdpFABC","volume":"118","author":"Sweet","year":"2021","journal-title":"Proc Natl Acad Sci USA"},{"key":"2025052805012202500_bib235","doi-asserted-by":"publisher","first-page":"4936","DOI":"10.1128\/AEM.01056-14","article-title":"To be or not to be a poly(3-hydroxybutyrate) (PHB) depolymerase: phaZd1 (PhaZ6) and PhaZd2 (PhaZ7) of Ralstonia eutropha, highly active PHB depolymerases with no detectable role in mobilization of accumulated PHB","volume":"80","author":"Sznajder","year":"2014","journal-title":"Appl Environ Microbiol"},{"key":"2025052805012202500_bib236","doi-asserted-by":"publisher","first-page":"690","DOI":"10.1128\/IAI.71.2.690-696.2003","article-title":"Lon, a stress-induced ATP-dependent protease, is critically important for systemic Salmonella enterica serovar typhimurium infection of mice","volume":"71","author":"Takaya","year":"2003","journal-title":"Infect Immun"},{"key":"2025052805012202500_bib237","doi-asserted-by":"publisher","first-page":"1408","DOI":"10.1111\/j.1462-2920.2006.01034.x","article-title":"Differential gene expression in response to phenol and catechol reveals different metabolic activities for the degradation of aromatic compounds in Bacillus subtilis","volume":"8","author":"Tam","year":"2006","journal-title":"Environ Microbiol"},{"key":"2025052805012202500_bib238","doi-asserted-by":"publisher","first-page":"151","DOI":"10.1016\/j.femsle.2004.10.013","article-title":"Expression of glutathione S-transferase and peptide methionine sulphoxide reductase in Ochrobactrum anthropi is correlated to the production of reactive oxygen species caused by aromatic substrates","volume":"241","author":"Tamburro","year":"2004","journal-title":"FEMS Microbiol Lett"},{"key":"2025052805012202500_bib239","doi-asserted-by":"publisher","first-page":"18","DOI":"10.1016\/j.jbiotec.2020.03.006","article-title":"Polyhydroxyalkanoate (PHA) synthase genes and PHA-associated gene clusters in Pseudomonas spp. and Janthinobacterium spp. isolated from Antarctica","volume":"313","author":"Tan","year":"2020","journal-title":"J Biotechnol"},{"key":"2025052805012202500_bib240","doi-asserted-by":"publisher","first-page":"1753","DOI":"10.1021\/acssynbio.7b00430","article-title":"Developing a synthetic biology toolkit for Comamonas testosteroni, an emerging cellular chassis for bioremediation","volume":"7","author":"Tang","year":"2018","journal-title":"ACS Synth Biol"},{"key":"2025052805012202500_bib241","doi-asserted-by":"publisher","first-page":"e0145821","DOI":"10.1128\/AEM.01458-21","article-title":"The overexpression of phasin and regulator genes promoting the synthesis of polyhydroxybutyrate in Cupriavidus necator H16 under nonstress conditions","volume":"88","author":"Tang","year":"2022","journal-title":"Appl Environ Microbiol"},{"key":"2025052805012202500_bib242","doi-asserted-by":"publisher","first-page":"1826","DOI":"10.3390\/microorganisms8111826","article-title":"Proteomic studies of the biofilm matrix including outer membrane vesicles of Burkholderia multivorans C1576, a strain of clinical importance for cystic fibrosis","volume":"8","author":"Ter\u00e1n","year":"2020","journal-title":"Microorganisms"},{"key":"2025052805012202500_bib243","doi-asserted-by":"publisher","first-page":"1147","DOI":"10.1021\/acs.biochem.4c00132","article-title":"The chaperone-active state of HdeB at pH 4 arises from its conformational rearrangement and enhanced stability instead of surface hydrophobicity","volume":"63","author":"Thapliyal","year":"2024","journal-title":"Biochemistry"},{"key":"2025052805012202500_bib244","doi-asserted-by":"publisher","first-page":"795","DOI":"10.1038\/nsmb.3087","article-title":"Impact of holdase chaperones Skp and SurA on the folding of \u03b2-barrel outer-membrane proteins","volume":"22","author":"Thoma","year":"2015","journal-title":"Nat Struct Mol Biol"},{"key":"2025052805012202500_bib245","doi-asserted-by":"publisher","first-page":"431","DOI":"10.1007\/s10534-006-9065-4","article-title":"Iron acquisition mechanisms of the Burkholderia cepacia complex","volume":"20","author":"Thomas","year":"2007","journal-title":"Biometals"},{"key":"2025052805012202500_bib246","doi-asserted-by":"publisher","first-page":"1155","DOI":"10.1128\/jb.168.3.1155-1158.1986","article-title":"Heat shock regulatory gene rpoH mRNA level increases after heat shock in Escherichia coli","volume":"168","author":"Tilly","year":"1986","journal-title":"J Bacteriol"},{"key":"2025052805012202500_bib247","doi-asserted-by":"publisher","first-page":"4071","DOI":"10.1021\/es070015y","article-title":"Detoxification of 2,4-dinitrotoluene by transgenic tobacco plants expressing a bacterial flavodoxin","volume":"41","author":"Tognetti","year":"2007","journal-title":"Environ Sci Technol"},{"key":"2025052805012202500_bib248","doi-asserted-by":"publisher","first-page":"2147","DOI":"10.1038\/s41467-018-04587-w","article-title":"Dynamic structural states of ClpB involved in its disaggregation function","volume":"9","author":"Uchihashi","year":"2018","journal-title":"Nat Commun"},{"key":"2025052805012202500_bib249","doi-asserted-by":"publisher","first-page":"47","DOI":"10.1007\/s10123-018-0004-3","article-title":"Burkholderia xenovorans LB400 possesses a functional polyhydroxyalkanoate anabolic pathway encoded by the pha genes and synthesizes poly(3-hydroxybutyrate) under nitrogen-limiting conditions","volume":"21","author":"Urtuvia","year":"2018","journal-title":"Int Microbiol"},{"key":"2025052805012202500_bib250","doi-asserted-by":"publisher","first-page":"208","DOI":"10.1016\/j.ijbiomac.2014.06.001","article-title":"Bacterial production of the biodegradable plastics polyhydroxyalkanoates","volume":"70","author":"Urtuvia","year":"2014","journal-title":"Int J Biol Macromol"},{"key":"2025052805012202500_bib251","doi-asserted-by":"publisher","first-page":"2019","DOI":"10.1074\/jbc.M106890200","article-title":"The mechanism-based inactivation of 2,3-dihydroxybiphenyl 1,2-dioxygenase by catecholic substrates","volume":"277","author":"Vaillancourt","year":"2002","journal-title":"J Biol Chem"},{"key":"2025052805012202500_bib252","doi-asserted-by":"publisher","first-page":"e0151273","DOI":"10.1371\/journal.pone.0151273","article-title":"Genetic and functional analysis of the biosynthesis of a non-ribosomal peptide siderophore in Burkholderia xenovorans LB400","volume":"11","author":"Vargas-Straube","year":"2016","journal-title":"PLoS One"},{"key":"2025052805012202500_bib253","doi-asserted-by":"publisher","first-page":"1447","DOI":"10.3390\/molecules28031447","article-title":"Glutathione-related enzymes and proteins: a review","volume":"28","author":"Va\u0161kov\u00e1","year":"2023","journal-title":"Molecules"},{"key":"2025052805012202500_bib254","doi-asserted-by":"publisher","first-page":"3533","DOI":"10.3390\/plants13243533","article-title":"Synthesis and degradation of the phytohormone indole-3-acetic acid by the versatile bacterium Paraburkholderia xenovorans LB400 and its growth promotion of Nicotiana tabacum plant","volume":"13","author":"Vega-Celed\u00f3n","year":"2024","journal-title":"Plants"},{"key":"2025052805012202500_bib255","doi-asserted-by":"publisher","first-page":"386","DOI":"10.3389\/fbioe.2020.00386","article-title":"The modification of regulatory circuits involved in the control of polyhydroxyalkanoates metabolism to improve their production","volume":"8","author":"Vel\u00e1zquez-S\u00e1nchez","year":"2020","journal-title":"Front Bioeng Biotechnol"},{"key":"2025052805012202500_bib256","doi-asserted-by":"publisher","first-page":"10","DOI":"10.1128\/msystems.00014-21","article-title":"Cofactor specificity of glucose-6-phosphate dehydrogenase isozymes in Pseudomonas putida reveals a general principle underlying glycolytic strategies in bacteria","volume":"6","author":"Volke","year":"2021","journal-title":"mSystems"},{"key":"2025052805012202500_bib257","doi-asserted-by":"publisher","first-page":"899","DOI":"10.1016\/j.tibs.2017.08.006","article-title":"Stress-activated chaperones: a first line of defense","volume":"42","author":"Voth","year":"2017","journal-title":"Trends Biochem Sci"},{"key":"2025052805012202500_bib258","doi-asserted-by":"publisher","first-page":"100627","DOI":"10.1016\/j.cophys.2022.100627","article-title":"Feeling the tension: the bacterial mechanosensitive channel of large conductance as a model system and drug target","volume":"31","author":"Wang","year":"2023","journal-title":"Curr Opin Physiol"},{"key":"2025052805012202500_bib259","doi-asserted-by":"publisher","first-page":"127302","DOI":"10.1016\/j.micres.2023.127302","article-title":"Bacterial second messenger c-di-GMP: emerging functions in stress resistance","volume":"268","author":"Wang","year":"2023","journal-title":"Microbiol Res"},{"key":"2025052805012202500_bib260","doi-asserted-by":"publisher","first-page":"225","DOI":"10.1016\/S0304-4157(96)00010-X","article-title":"Adaptation mechanisms of microorganisms to the toxic effects of organic solvents on membranes","volume":"1286","author":"Weber","year":"1996","journal-title":"Biochim Biophys Acta Rev Biomembr"},{"key":"2025052805012202500_bib261","doi-asserted-by":"publisher","first-page":"2013","DOI":"10.1099\/13500872-140-8-2013","article-title":"Cis\/trans isomerization of fatty acids as a defence mechanism of Pseudomonas putida strains to toxic concentrations of toluene","volume":"140","author":"Weber","year":"1994","journal-title":"Microbiology"},{"key":"2025052805012202500_bib262","doi-asserted-by":"publisher","first-page":"719","DOI":"10.1146\/annurev-micro-032421-035644","article-title":"The bacterial Hsp90 chaperone: cellular functions and mechanism of action","volume":"75","author":"Wickner","year":"2021","journal-title":"Annu Rev Microbiol"},{"key":"2025052805012202500_bib263","doi-asserted-by":"publisher","first-page":"651","DOI":"10.1038\/s41589-022-01237-7","article-title":"Complex regulation in a Comamonas platform for diverse aromatic carbon metabolism","volume":"19","author":"Wilkes","year":"2023","journal-title":"Nat Chem Biol"},{"key":"2025052805012202500_bib264","doi-asserted-by":"publisher","first-page":"691","DOI":"10.1016\/j.cell.2008.09.024","article-title":"Bleach activates a redox-regulated chaperone by oxidative protein unfolding","volume":"135","author":"Winter","year":"2008","journal-title":"Cell"},{"key":"2025052805012202500_bib265","doi-asserted-by":"publisher","first-page":"381","DOI":"10.1016\/j.molcel.2004.12.027","article-title":"Severe oxidative stress causes inactivation of DnaK and activation of the redox-regulated chaperone Hsp33","volume":"17","author":"Winter","year":"2005","journal-title":"Mol Cell"},{"key":"2025052805012202500_bib266","doi-asserted-by":"publisher","first-page":"4126","DOI":"10.1038\/s41467-022-31767-6","article-title":"Trigger factor both holds and folds its client proteins","volume":"13","author":"Wu","year":"2022","journal-title":"Nat Commun"},{"key":"2025052805012202500_bib267","doi-asserted-by":"publisher","first-page":"38","DOI":"10.1016\/j.micpath.2016.01.009","article-title":"The Lon protease homologue LonA, not LonC, contributes to the stress tolerance and biofilm formation of Actinobacillus pleuropneumoniae","volume":"93","author":"Xie","year":"2016","journal-title":"Microb Pathog"},{"key":"2025052805012202500_bib269","doi-asserted-by":"publisher","first-page":"660","DOI":"10.1038\/s41396-023-01377-1","article-title":"Salinity determines performance, functional populations, and microbial ecology in consortia attenuating organohalide pollutants","volume":"17","author":"Xu","year":"2023","journal-title":"ISME J"},{"key":"2025052805012202500_bib270","doi-asserted-by":"publisher","first-page":"11","DOI":"10.1186\/s40793-017-0231-9","article-title":"Draft genome sequence of Arthrobacter sp. strain B6 isolated from the high-arsenic sediments in Datong Basin, China","volume":"12","author":"Xu","year":"2017","journal-title":"Stand Genomic Sci"},{"key":"2025052805012202500_bib272","doi-asserted-by":"publisher","first-page":"367","DOI":"10.3390\/microorganisms11020367","article-title":"Comprehensive genomics and proteomics analysis reveals the multiple response strategies of endophytic Bacillus sp. WR13 to iron limitation","volume":"11","author":"Yue","year":"2023","journal-title":"Microorganisms"},{"key":"2025052805012202500_bib273","doi-asserted-by":"publisher","first-page":"161","DOI":"10.1186\/s12964-019-0481-9","article-title":"Chaperone activity of serine protease HtrA of Helicobacter pylori as a crucial survival factor under stress conditions","volume":"17","author":"Zarzecka","year":"2019","journal-title":"Cell Commun Signal"},{"key":"2025052805012202500_bib274","doi-asserted-by":"publisher","first-page":"132102","DOI":"10.1016\/j.jhazmat.2023.132102","article-title":"Enhanced degradation of petroleum in saline soil by nitrogen stimulation and halophilic emulsifying bacteria Bacillus sp. Z-13","volume":"459","author":"Zhang","year":"2023","journal-title":"J Hazard Mater"},{"key":"2025052805012202500_bib275","doi-asserted-by":"publisher","first-page":"222","DOI":"10.1038\/nrmicro1839","article-title":"Membrane lipid homeostasis in bacteria","volume":"6","author":"Zhang","year":"2008","journal-title":"Nat Rev Microbiol"},{"key":"2025052805012202500_bib276","doi-asserted-by":"publisher","first-page":"28180","DOI":"10.1074\/jbc.M113.491613","article-title":"YidC protein, a molecular chaperone for LacY protein folding via the SecYEG protein machinery","volume":"288","author":"Zhu","year":"2013","journal-title":"J Biol Chem"},{"key":"2025052805012202500_bib277","doi-asserted-by":"publisher","first-page":"1375","DOI":"10.1007\/s00253-011-3763-8","article-title":"Adaptation mechanisms of bacteria during the degradation of polychlorinated biphenyls in the presence of natural and synthetic terpenes as potential degradation inducers","volume":"94","author":"Zor\u00e1dov\u00e1-Mur\u00ednov\u00e1","year":"2012","journal-title":"Appl Microbiol Biotechnol"}],"container-title":["FEMS Microbiology Reviews"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/femsre\/advance-article-pdf\/doi\/10.1093\/femsre\/fuaf021\/63236733\/fuaf021.pdf","content-type":"application\/pdf","content-version":"am","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/femsre\/article-pdf\/doi\/10.1093\/femsre\/fuaf021\/63236733\/fuaf021.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/femsre\/article-pdf\/doi\/10.1093\/femsre\/fuaf021\/63236733\/fuaf021.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,5,28]],"date-time":"2025-05-28T09:01:31Z","timestamp":1748422891000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/femsre\/article\/doi\/10.1093\/femsre\/fuaf021\/8137893"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025]]},"references-count":274,"URL":"https:\/\/doi.org\/10.1093\/femsre\/fuaf021","relation":{},"ISSN":["1574-6976"],"issn-type":[{"value":"1574-6976","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2025]]},"published":{"date-parts":[[2025]]},"article-number":"fuaf021"}}