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The genetics of feline HCM are poorly understood and limited genetic discoveries remain breed- or family-specific. We aimed to identify novel causative or disease-modifying variants in a large cohort of cats reflective of the general cat population. In a second cohort, we sought to characterize transcriptomics differences between HCM-affected cats and healthy controls. DNA was isolated from 138 domestic cats (109 HCM and 29 controls). No single or combination of variants of high, moderate, or modifying impact were identified by genome-wide analysis to cause or modify disease severity of HCM. Several rare high and moderate impact variants in genes associated with human HCM were detected in diseased cats. In a second cohort, left ventricular (LV), interventricular septal (IVS), and left atrial (LA) tissues of 27 HCM-affected and 15 control cats were submitted for stranded mature RNA-sequencing at 50 million reads\/sample. A total of 74, 115, and 45 differentially expressed genes (DEGs) were upregulated and 8, 53, and 48 DEGs were downregulated in LV posterior wall, IVS, and LA tissue, respectively, in HCM-affected cats compared to controls. Similar to humans, the genetic etiology of feline HCM remains unknown in a high proportion of cases. Transcriptomics revealed molecular signatures that may help identify novel HCM biomarkers or drug targets in future investigations.<\/jats:p>","DOI":"10.1093\/g3journal\/jkaf153","type":"journal-article","created":{"date-parts":[[2025,7,3]],"date-time":"2025-07-03T15:41:01Z","timestamp":1751557261000},"source":"Crossref","is-referenced-by-count":1,"title":["Unraveling the genetics of feline hypertrophic cardiomyopathy: a multiomics study of 138 cats"],"prefix":"10.1093","volume":"15","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-7125-5356","authenticated-orcid":false,"given":"Joanna L","family":"Kaplan","sequence":"first","affiliation":[{"name":"Department of Medicine and Epidemiology, School of Veterinary Medicine, University of California, Davis , Davis, CA 95616 ,","place":["United States"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5016-3743","authenticated-orcid":false,"given":"Victor N","family":"Rivas","sequence":"additional","affiliation":[{"name":"The Feline Health Center, College of Veterinary Medicine, North Carolina State University , Raleigh, NC 27606 ,","place":["United States"]},{"name":"Department of Clinical Sciences, College of Veterinary Medicine, North Carolina State University , Raleigh, NC 27606 ,","place":["United States"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Michael W","family":"Vandewege","sequence":"additional","affiliation":[{"name":"Department of Clinical Sciences, College of Veterinary Medicine, North Carolina State University , Raleigh, NC 27606 ,","place":["United States"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jalena R","family":"Wouters","sequence":"additional","affiliation":[{"name":"Department of Medicine and Epidemiology, School of Veterinary Medicine, University of California, Davis , Davis, CA 95616 ,","place":["United States"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Samantha P","family":"Harris","sequence":"additional","affiliation":[{"name":"Department of Physiology, College of Medicine-Tucson, University of Arizona , Tucson, AZ 85724 ,","place":["United States"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Katherine M","family":"Meurs","sequence":"additional","affiliation":[{"name":"The Feline Health Center, College of Veterinary Medicine, North Carolina State University , Raleigh, NC 27606 ,","place":["United States"]},{"name":"Department of Clinical Sciences, College of Veterinary Medicine, North Carolina State University , Raleigh, NC 27606 ,","place":["United States"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Joshua A","family":"Stern","sequence":"additional","affiliation":[{"name":"The Feline Health Center, College of Veterinary Medicine, North Carolina State University , Raleigh, NC 27606 ,","place":["United 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