{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,6]],"date-time":"2026-04-06T15:16:36Z","timestamp":1775488596882,"version":"3.50.1"},"reference-count":50,"publisher":"Oxford University Press (OUP)","issue":"3","license":[{"start":{"date-parts":[[2026,1,14]],"date-time":"2026-01-14T00:00:00Z","timestamp":1768348800000},"content-version":"vor","delay-in-days":1,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100019151","name":"UK Natural Environment Research Council","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100019151","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100029350","name":"ASTP","doi-asserted-by":"publisher","award":["NE\/R001081\/1"],"award-info":[{"award-number":["NE\/R001081\/1"]}],"id":[{"id":"10.13039\/100029350","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2026,3,4]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>The genus Silene is an important model system for fields as diverse as sex chromosome evolution, speciation, and disease ecology. However, genomic resources remain scarce in the genus. Here, we present a near chromosome-scale genome assembly and high-density linkage map for S. uniflora, a hermaphroditic\/gynodioecious species which is an important model for rapid adaptation to anthropogenic disturbance and the role of phenotypic plasticity in adaptive evolution. Using a combination of long-read and Hi-C sequencing technologies, we generated a 1,268\u2005Mb genome assembly with a scaffold N50 of 40.72\u2005Mb and 682\u2005Mb assembled into 12 chromosomes. We annotated the genome using evidence from transcriptome and protein mapping in combination with ab initio gene prediction, resulting in 41,603 protein-coding genes and a BUSCO completeness score of 91%. We also present a linkage map which we used to validate the genome assembly and estimate local recombination rate across the genome. Comparison to the only 2 other Silene species with chromosome-scale genome assemblies reveals widespread genome rearrangements in the genus, suggesting Silene may be a promising study system for the role of genome rearrangement in evolution, particularly in the evolution of sex chromosomes and adaptation.<\/jats:p>","DOI":"10.1093\/g3journal\/jkag002","type":"journal-article","created":{"date-parts":[[2026,1,14]],"date-time":"2026-01-14T04:56:51Z","timestamp":1768366611000},"source":"Crossref","is-referenced-by-count":1,"title":["High-quality genome assembly and linkage map for a rapidly evolving plant species:\n                    <i>Silene uniflora<\/i>"],"prefix":"10.1093","volume":"16","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-1213-1169","authenticated-orcid":false,"given":"Owen G","family":"Osborne","sequence":"first","affiliation":[{"name":"Molecular Ecology and Evolution Group, School of Environmental and Natural Sciences, Bangor University , Bangor LL57 2DG ,","place":["United Kingdom"]}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Daniel P","family":"Wood","sequence":"additional","affiliation":[{"name":"Molecular Ecology and Evolution Group, School of Environmental and Natural Sciences, Bangor University , Bangor LL57 2DG ,","place":["United Kingdom"]},{"name":"Royal Botanic Gardens , Kew, Richmond TW9 3AB ,","place":["United Kingdom"]}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mariya P","family":"Dobreva","sequence":"additional","affiliation":[{"name":"Molecular Ecology and Evolution Group, School of Environmental and Natural Sciences, Bangor University , Bangor LL57 2DG ,","place":["United Kingdom"]}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Luke T","family":"Dunning","sequence":"additional","affiliation":[{"name":"Ecology and Evolutionary Biology, School of Biosciences , Sheffield S10 2TN ,","place":["United 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Ecology and Evolution Group, School of Environmental and Natural Sciences, Bangor University , Bangor LL57 2DG ,","place":["United Kingdom"]}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Adam C","family":"Algar","sequence":"additional","affiliation":[{"name":"Department of Biology, Lakehead University , Thunder Bay, Ontario P7B 5E1 ,","place":["Canada"]}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9131-6670","authenticated-orcid":false,"given":"Greta","family":"Bocedi","sequence":"additional","affiliation":[{"name":"School of Biological Sciences, University of Aberdeen , Aberdeen AB24 2TZ ,","place":["United Kingdom"]}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5937-2496","authenticated-orcid":false,"given":"Cecile","family":"Gubry-Rangin","sequence":"additional","affiliation":[{"name":"School of Biological Sciences, University of Aberdeen , Aberdeen AB24 2TZ ,","place":["United Kingdom"]}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Leonel","family":"Herrera-Alsina","sequence":"additional","affiliation":[{"name":"School of Biological Sciences, University of Aberdeen , Aberdeen AB24 2TZ ,","place":["United Kingdom"]},{"name":"School of Mathematical & Statistical Sciences, University of Galway , Galway H91 TK33 ,","place":["Ireland"]}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0348-5675","authenticated-orcid":false,"given":"Berry","family":"Juliandi","sequence":"additional","affiliation":[{"name":"Department of Biology, Faculty of Mathematics and Natural Sciences, IPB University , Bogor 16680, West Java ,","place":["Indonesia"]}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lesley T","family":"Lancaster","sequence":"additional","affiliation":[{"name":"School of Biological Sciences, University of Aberdeen , Aberdeen AB24 2TZ ,","place":["United 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