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Despite growing interest in its predation mechanisms, a high-quality reference genome is lacking. We constructed a chromosome-scale genome assembly of S. schoenii using a hybrid approach combining Pacific Biosciences HiFi long-read sequencing with Hi-C chromatin conformation capture. The 14.3\u2005Mb genome is resolved into 6 nuclear and 1 mitochondrial chromosome, demonstrating high contiguity and near-complete gene-space representation. Building upon this reference, we generated an evidence-guided annotation using BRAKER2 and eggNOG-mapper to identify genes and other genomic features. Interestingly, this complete assembly also reveals an expanded mating-type (MAT) system with multiple active copies that are co-transcribed, bypassing conventional silencing mechanisms. Furthermore, comparative genomics highlights species-specific expansions in several gene classes; including, secreted aspartic proteases and adhesins, linked to its necrotrophic lifestyle. This improved reference genome provides a crucial resource for investigating the molecular basis of fungal predation and mating-type evolution.<\/jats:p>","DOI":"10.1093\/g3journal\/jkag067","type":"journal-article","created":{"date-parts":[[2026,3,18]],"date-time":"2026-03-18T18:27:24Z","timestamp":1773858444000},"source":"Crossref","is-referenced-by-count":1,"title":["Chromosome-scale genome assembly and characterization of\n                    <i>Saccharomycopsis schoenii<\/i>\n                    , a necrotrophic predatory yeast"],"prefix":"10.1093","volume":"16","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-9357-5588","authenticated-orcid":false,"given":"Divya","family":"Kriti","sequence":"first","affiliation":[{"name":"Department of Biochemistry and Molecular Biology, University of British Columbia , 2350 Health Sciences Mall, Vancouver, BC, Canada V6T 1Z3"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Marjan","family":"Barazandeh","sequence":"additional","affiliation":[{"name":"Faculty of Pharmaceutical Sciences, University of British Columbia , 2405 Wesbrook Mall, Vancouver, BC, Canada V6T 1Z3"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Joseph Uche","family":"Ogbede","sequence":"additional","affiliation":[{"name":"Faculty of Pharmaceutical Sciences, University of British Columbia , 2405 Wesbrook Mall, Vancouver, BC, Canada V6T 1Z3"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Guri","family":"Giaever","sequence":"additional","affiliation":[{"name":"Faculty of Pharmaceutical Sciences, University of British Columbia , 2405 Wesbrook Mall, Vancouver, BC, Canada V6T 1Z3"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4016-8874","authenticated-orcid":false,"given":"Corey","family":"Nislow","sequence":"additional","affiliation":[{"name":"Department of Biochemistry and Molecular Biology, University of British Columbia , 2350 Health Sciences Mall, Vancouver, BC, Canada V6T 1Z3"},{"name":"Faculty of Pharmaceutical Sciences, University of British Columbia , 2405 Wesbrook Mall, Vancouver, BC, Canada V6T 1Z3"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2026,3,18]]},"reference":[{"key":"2026050613224327100_jkag067-B1","doi-asserted-by":"publisher","first-page":"1117","DOI":"10.1038\/nature08264","article-title":"Surface hydrophobin prevents immune recognition of airborne fungal 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