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Reference genome of the Cx. pipiens pallens is helpful to understand its genomic basis underlying the complexity of mosquito biology. Using 142\u2009Gb (\u223c250\u00d7) of the PacBio long reads, we assembled a draft genome of 567.56\u2009Mb. The assembly includes 1,714 contigs with a N50 length of 0.84\u2009Mb and a Benchmarking Universal Single-Copy Orthologs (BUSCO) completeness of 95.6% (n\u2009=\u20091,367). We masked 60.63% (344.11\u2009Mb) of the genome as repetitive elements and identified 2,032 noncoding RNAs. A total of 18,122 protein-coding genes captured a 94.1% of BUSCO gene set. 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