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The independent colonizations of such springs mean that there are naturally replicated lineages that provide a powerful model for studying adaptation and convergent evolution. However, there are limited genomic resources for many genera and species across Poeciliidae. Here, we present six high-quality, chromosome-level, annotated genome assemblies for Poecilia and Gambusia populations, five of which are the first for the species or ecotype, and the remaining assembly improved the current reference genome contiguity by more than 100-fold. Using these new assemblies, we compare repeat content and model historical changes in effective population size.<\/jats:p>","DOI":"10.1093\/gbe\/evaf111","type":"journal-article","created":{"date-parts":[[2025,6,27]],"date-time":"2025-06-27T23:11:34Z","timestamp":1751065894000},"source":"Crossref","is-referenced-by-count":1,"title":["New Genome Assemblies for Poeciliidae: A Foundation for Adaptation Studies"],"prefix":"10.1093","volume":"17","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-5352-4663","authenticated-orcid":false,"given":"Kara","family":"Ryan","sequence":"first","affiliation":[{"name":"Department of Ecology and Evolutionary Biology, University of California, Santa Cruz , Santa Cruz, CA 95060 ,","place":["USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5569-8061","authenticated-orcid":false,"given":"Rishi","family":"De-Kayne","sequence":"additional","affiliation":[{"name":"Department of Ecology and Evolutionary Biology, University of California, Santa Cruz , Santa Cruz, CA 95060 ,","place":["USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0001-7203-6788","authenticated-orcid":false,"given":"Jeremy","family":"Davis","sequence":"additional","affiliation":[{"name":"Department of Ecology and Evolutionary Biology, University of California, Santa Cruz , Santa Cruz, CA 95060 ,","place":["USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8025-5569","authenticated-orcid":false,"given":"Lenin","family":"Arias-Rodriguez","sequence":"additional","affiliation":[{"name":"Divisi\u00f3n Acad\u00e9mica de Ciencias Biol\u00f3gicas, Universidad Ju\u00e1rez Aut\u00f3noma de Tabasco (UJAT) , Villahermosa ,","place":["M\u00e9xico"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0326-0890","authenticated-orcid":false,"given":"Michael","family":"Tobler","sequence":"additional","affiliation":[{"name":"Department of Biology, University of Missouri\u2014St. Louis , St. Louis, MO 63121 ,","place":["USA"]},{"name":"Whitney R. 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