{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,5]],"date-time":"2026-10-05T14:01:45Z","timestamp":1791208905031,"version":"4.1.0"},"reference-count":80,"publisher":"Oxford University Press (OUP)","issue":"12","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2014,12]]},"DOI":"10.1093\/gbe\/evu261","type":"journal-article","created":{"date-parts":[[2014,12,5]],"date-time":"2014-12-05T05:34:29Z","timestamp":1417757669000},"page":"3295-3313","source":"Crossref","is-referenced-by-count":221,"title":["Evolutionary Origins and Dynamics of Octoploid Strawberry Subgenomes Revealed by Dense Targeted Capture Linkage Maps"],"prefix":"10.1093","volume":"6","author":[{"given":"Jacob A.","family":"Tennessen","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rajanikanth","family":"Govindarajulu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tia-Lynn","family":"Ashman","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Aaron","family":"Liston","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2014,12,4]]},"reference":[{"key":"key\n\t\t\t\t20170627115354_evu261-B1","doi-asserted-by":"crossref","first-page":"1201","DOI":"10.1007\/s00122-003-1370-5","article-title":"High variability and disomic segregation of microsatellites in the octoploid Fragaria virginiana Mill","volume":"107","author":"Ashley","year":"2003","journal-title":"(Rosaceae). Theor Appl Genet."},{"key":"key\n\t\t\t\t20170627115354_evu261-B2","first-page":"152","article-title":"Techniques for multi-genome synteny analysis to overcome assembly limitations","volume":"17","author":"Bhutkar","year":"2006","journal-title":"Genome Inform."},{"key":"key\n\t\t\t\t20170627115354_evu261-B3","doi-asserted-by":"crossref","first-page":"879","DOI":"10.21273\/HORTSCI.25.8.879","article-title":"Cytogenetics and evolution in American Fragaria","volume":"25","author":"Bringhurst","year":"1990","journal-title":"HortScience"},{"key":"key\n\t\t\t\t20170627115354_evu261-B4","doi-asserted-by":"crossref","first-page":"73","DOI":"10.1038\/hdy.2009.24","article-title":"Gene loss and silencing in Tragopogon miscellus (Asteraceae): comparison of natural and synthetic allotetraploids","volume":"103","author":"Buggs","year":"2009","journal-title":"Heredity"},{"key":"key\n\t\t\t\t20170627115354_evu261-B5","doi-asserted-by":"crossref","first-page":"653","DOI":"10.1139\/g76-076","article-title":"Cytological diploidization in the cultivated octoploid strawberry F. \u00d7 ananassa","volume":"18","author":"Byrne","year":"1976","journal-title":"Can J Genet Cytol."},{"key":"key\n\t\t\t\t20170627115354_evu261-B6","doi-asserted-by":"crossref","first-page":"135","DOI":"10.1007\/s11103-011-9852-3","article-title":"Genome evolution in diploid and tetraploid Coffea species as revealed by comparative analysis of orthologous genome segments","volume":"78","author":"Cenci","year":"2012","journal-title":"Plant Mol Biol."},{"key":"key\n\t\t\t\t20170627115354_evu261-B7","doi-asserted-by":"crossref","first-page":"950","DOI":"10.1126\/science.1253435","article-title":"Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome","volume":"345","author":"Chalhoub","year":"2014","journal-title":"Science"},{"key":"key\n\t\t\t\t20170627115354_evu261-B8","doi-asserted-by":"crossref","first-page":"240","DOI":"10.1002\/bies.20374","article-title":"Mechanisms of genomic rearrangements and gene expression changes in plant polyploids","volume":"28","author":"Chen","year":"2006","journal-title":"Bioessays"},{"key":"key\n\t\t\t\t20170627115354_evu261-B9","doi-asserted-by":"crossref","first-page":"1181","DOI":"10.1126\/science.1255274","article-title":"The coffee genome provides insight into the convergent evolution of caffeine biosynthesis","volume":"345","author":"Denoeud","year":"2014","journal-title":"Science"},{"key":"key\n\t\t\t\t20170627115354_evu261-B10","doi-asserted-by":"crossref","first-page":"e102237","DOI":"10.1371\/journal.pone.0102237","article-title":"A phylogenetic analysis of the genus Fragaria (strawberry) using intron-containing sequence from the ADH-1 gene","volume":"9","author":"DiMeglio","year":"2014","journal-title":"PLoS One"},{"key":"key\n\t\t\t\t20170627115354_evu261-B11","doi-asserted-by":"crossref","first-page":"40","DOI":"10.1111\/mec.12581","article-title":"Recent progress and challenges in population genetics of polyploid organisms: an overview of current state-of-the-art molecular and statistical tools","volume":"23","author":"Dufresne","year":"2014","journal-title":"Mol Ecol."},{"key":"key\n\t\t\t\t20170627115354_evu261-B12","first-page":"11","article-title":"A rapid DNA isolation procedure for small quantities of fresh leaf tissue","volume":"19","author":"Doyle","year":"1987","journal-title":"Phytochem Bull."},{"key":"key\n\t\t\t\t20170627115354_evu261-B13","doi-asserted-by":"crossref","first-page":"167","DOI":"10.1093\/genetics\/19.2.167","article-title":"A novel type of hybridity in Fragaria","volume":"19","author":"East","year":"1934","journal-title":"Genetics"},{"key":"key\n\t\t\t\t20170627115354_evu261-B14","first-page":"545","article-title":"Crossability and phylogenetic relations in the main European species of Fragaria","volume":"52","author":"Federova","year":"1946","journal-title":"Compte Rend (Doklady) Acad Sci USSR."},{"key":"key\n\t\t\t\t20170627115354_evu261-B15","doi-asserted-by":"crossref","first-page":"763","DOI":"10.1534\/genetics.112.146316","article-title":"Genome evolution due to allopolyploidization in wheat","volume":"192","author":"Feldman","year":"2012","journal-title":"Genetics"},{"key":"key\n\t\t\t\t20170627115354_evu261-B16","doi-asserted-by":"crossref","first-page":"670","DOI":"10.1186\/1471-2164-14-670","article-title":"An evaluation of the PacBio RS platform for sequencing and de novo assembly of a chloroplast genome","volume":"14","author":"Ferrarini","year":"2013","journal-title":"BMC Genomics"},{"key":"key\n\t\t\t\t20170627115354_evu261-B17","doi-asserted-by":"crossref","first-page":"49","DOI":"10.1159\/000084937","article-title":"Hybrid genome evolution by transposition","volume":"110","author":"Fontdevila","year":"2005","journal-title":"Cytogenet Genome Res."},{"key":"key\n\t\t\t\t20170627115354_evu261-B18","doi-asserted-by":"crossref","first-page":"18","DOI":"10.1111\/j.1469-8137.2009.03089.x","article-title":"Homoeologous recombination in allopolyploids: the polyploid ratchet","volume":"186","author":"Gaeta","year":"2010","journal-title":"New Phytol."},{"key":"key\n\t\t\t\t20170627115354_evu261-B19","doi-asserted-by":"crossref","first-page":"1425","DOI":"10.1534\/genetics.110.122911","article-title":"Comparative genetic mapping points to different sex chromosomes in sibling species of wild strawberry (Fragaria)","volume":"186","author":"Goldberg","year":"2010","journal-title":"Genetics"},{"key":"key\n\t\t\t\t20170627115354_evu261-B20","doi-asserted-by":"crossref","first-page":"3023","DOI":"10.1093\/molbev\/mss110","article-title":"The cytonuclear dimension of allopolyploid evolution: an example from cotton using rubisco","volume":"29","author":"Gong","year":"2012","journal-title":"Mol Biol Evol."},{"key":"key\n\t\t\t\t20170627115354_evu261-B21","doi-asserted-by":"crossref","first-page":"710","DOI":"10.1126\/science.1188021","article-title":"A draft sequence of the Neandertal genome","volume":"328","author":"Green","year":"2010","journal-title":"Science"},{"key":"key\n\t\t\t\t20170627115354_evu261-B22","doi-asserted-by":"crossref","DOI":"10.1079\/9781845938017.0000","volume-title":"Plant evolution and the origin of crop species","author":"Hancock","year":"2012"},{"key":"key\n\t\t\t\t20170627115354_evu261-B23","doi-asserted-by":"crossref","first-page":"169","DOI":"10.1093\/dnares\/dst049","article-title":"Dissection of the octoploid strawberry genome by deep sequencing of the genomes of Fragaria species","volume":"21","author":"Hirakawa","year":"2014","journal-title":"DNA Res."},{"key":"key\n\t\t\t\t20170627115354_evu261-B24","doi-asserted-by":"crossref","first-page":"89","DOI":"10.1146\/annurev-arplant-050312-120237","article-title":"Tapping the promise of genomics in species with complex, nonmodel genomes","volume":"64","author":"Hirsch","year":"2013","journal-title":"Annu Rev Plant Biol."},{"key":"key\n\t\t\t\t20170627115354_evu261-B25","doi-asserted-by":"crossref","first-page":"e1003093","DOI":"10.1371\/journal.pgen.1003093","article-title":"Genetic adaptation associated with genome-doubling in autotetraploid Arabidopsis arenosa","volume":"8","author":"Hollister","year":"2012","journal-title":"PLoS Genet."},{"key":"key\n\t\t\t\t20170627115354_evu261-B26","doi-asserted-by":"crossref","first-page":"e88292","DOI":"10.1371\/journal.pone.0088292","article-title":"De-novo RNA sequencing and metabolite profiling to identify genes involved in anthocyanin biosynthesis in Korean black raspberry (Rubus coreanus Miquel)","volume":"9","author":"Hyun","year":"2014","journal-title":"PLoS One"},{"key":"key\n\t\t\t\t20170627115354_evu261-B27","doi-asserted-by":"crossref","first-page":"590","DOI":"10.1093\/genetics\/11.6.590","article-title":"Cytological and genetic studies on Fragaria","volume":"11","author":"Ichijima","year":"1926","journal-title":"Genetics"},{"key":"key\n\t\t\t\t20170627115354_evu261-B28","doi-asserted-by":"crossref","first-page":"9","DOI":"10.1186\/1471-2148-11-9","article-title":"Comparative analysis of rosaceous genomes and the reconstruction of a putative ancestral genome for the family","volume":"11","author":"Illa","year":"2011","journal-title":"BMC Evol Biol."},{"key":"key\n\t\t\t\t20170627115354_evu261-B29","doi-asserted-by":"crossref","first-page":"487","DOI":"10.1038\/ng.2586","article-title":"The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution","volume":"45","author":"International Peach Genome Initiative, et al","year":"2013","journal-title":"Nat Genet."},{"key":"key\n\t\t\t\t20170627115354_evu261-B30","doi-asserted-by":"crossref","first-page":"79","DOI":"10.1093\/dnares\/dss035","article-title":"Construction of an integrated high density simple sequence repeat linkage map in cultivated strawberry (Fragaria \u00d7 ananassa) and its applicability","volume":"20","author":"Isobe","year":"2013","journal-title":"DNA Res."},{"key":"key\n\t\t\t\t20170627115354_evu261-B80","doi-asserted-by":"crossref","first-page":"3139","DOI":"10.1093\/molbev\/msr144","article-title":"Long-range and targeted ectopic recombination between the two homeologous chromosomes 11 and 12 in Oryza species","volume":"28","author":"Jacquemin","year":"2011","journal-title":"Mol Biol Evol."},{"issue":"6","key":"key\n\t\t\t\t20170627115354_evu261-B31","doi-asserted-by":"crossref","first-page":"R61","DOI":"10.1186\/gb-2013-14-6-r61","article-title":"User guide for mapping-by-sequencing in Arabidopsis","volume":"14","author":"James","year":"2013","journal-title":"Genome Biol."},{"key":"key\n\t\t\t\t20170627115354_evu261-B32","doi-asserted-by":"crossref","first-page":"97","DOI":"10.1038\/nature09916","article-title":"Ancestral polyploidy in seed plants and angiosperms","volume":"473","author":"Jiao","year":"2011","journal-title":"Nature"},{"key":"key\n\t\t\t\t20170627115354_evu261-B33","doi-asserted-by":"crossref","first-page":"615","DOI":"10.1111\/j.1095-8312.2004.00345.x","article-title":"Concerted evolution of 18-5.8-26S rDNA repeats in Nicotiana allotetraploids","volume":"82","author":"Kovarik","year":"2004","journal-title":"Biol J Linn Soc Lond."},{"key":"key\n\t\t\t\t20170627115354_evu261-B34","doi-asserted-by":"crossref","first-page":"656","DOI":"10.1101\/gr.229202","article-title":"BLAT\u2014the BLAST-like alignment tool","volume":"12","author":"Kent","year":"2002","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t20170627115354_evu261-B35","doi-asserted-by":"crossref","first-page":"666","DOI":"10.1111\/j.1365-2958.2011.07600.x","article-title":"Gene conversion results in the equalization of genome copies in the polyploid haloarchaeon Haloferax volcanii","volume":"80","author":"Lange","year":"2011","journal-title":"Mol Microbiol."},{"key":"key\n\t\t\t\t20170627115354_evu261-B36","doi-asserted-by":"crossref","first-page":"113","DOI":"10.1111\/j.1469-8137.2009.03117.x","article-title":"Making a functional diploid: from polysomic to disomic inheritance","volume":"186","author":"Le Comber","year":"2010","journal-title":"New Phytol."},{"key":"key\n\t\t\t\t20170627115354_evu261-B37","doi-asserted-by":"crossref","first-page":"619","DOI":"10.1007\/s00122-003-1300-6","article-title":"Characterization of mixed disomic and polysomic inheritance in the octoploid strawberry (Fragaria \u00d7 ananassa) using AFLP mapping","volume":"107","author":"Lerceteau-K\u00f6hler","year":"2003","journal-title":"Theor Appl Genet."},{"key":"key\n\t\t\t\t20170627115354_evu261-B38","doi-asserted-by":"crossref","first-page":"1754","DOI":"10.1093\/bioinformatics\/btp324","article-title":"Fast and accurate short read alignment with Burrows-Wheeler transform","volume":"25","author":"Li","year":"2009","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170627115354_evu261-B39","doi-asserted-by":"crossref","first-page":"2078","DOI":"10.1093\/bioinformatics\/btp352","article-title":"The sequence alignment\/map (SAM) format and SAMtools","volume":"25","author":"Li","year":"2009","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170627115354_evu261-B40","doi-asserted-by":"crossref","first-page":"599","DOI":"10.1111\/j.1095-8312.2004.00344.x","article-title":"Genome evolution in allotetraploid Nicotiana","volume":"82","author":"Lim","year":"2004","journal-title":"Biol J Linn Soc Lond."},{"key":"key\n\t\t\t\t20170627115354_evu261-B41","doi-asserted-by":"crossref","first-page":"2016","DOI":"10.3732\/ajb.1300036","article-title":"Natural hybrids between Tragopogon mirus and T. miscellus (Asteraceae): a new perspective on karyotypic changes following hybridization at the polyploid level","volume":"100","author":"Lipman","year":"2013","journal-title":"Am J Bot."},{"key":"key\n\t\t\t\t20170627115354_evu261-B42","doi-asserted-by":"crossref","first-page":"49","DOI":"10.1038\/nrg3374","article-title":"How important are transposons for plant evolution?","volume":"14","author":"Lisch","year":"2013","journal-title":"Nat Rev Genet."},{"key":"key\n\t\t\t\t20170627115354_evu261-B43","doi-asserted-by":"crossref","first-page":"1686","DOI":"10.3732\/ajb.1400140","article-title":"Fragaria: a genus with deep historical roots and ripe for evolutionary and ecological insights","volume":"101","author":"Liston","year":"2014","journal-title":"Am J Bot."},{"key":"key\n\t\t\t\t20170627115354_evu261-B44","doi-asserted-by":"crossref","first-page":"221","DOI":"10.1111\/j.1365-313X.2004.02297.x","article-title":"Genomic changes in synthetic Arabidopsis polyploids","volume":"41","author":"Madlung","year":"2005","journal-title":"Plant J."},{"key":"key\n\t\t\t\t20170627115354_evu261-B45","doi-asserted-by":"crossref","first-page":"310","DOI":"10.1159\/000082414","article-title":"Identification of individual chromosomes and parental genomes in Brassica juncea using GISH and FISH","volume":"109","author":"Maluszynska","year":"2005","journal-title":"Cytogenet Genome Res."},{"key":"key\n\t\t\t\t20170627115354_evu261-B46","doi-asserted-by":"crossref","first-page":"1250092","DOI":"10.1126\/science.1250092","article-title":"Ancient hybridizations among the ancestral genomes of bread wheat","volume":"345","author":"Marcussen","year":"2014","journal-title":"Science"},{"key":"key\n\t\t\t\t20170627115354_evu261-B47","doi-asserted-by":"crossref","first-page":"78","DOI":"10.1111\/j.2007.0018-0661.02000.x","article-title":"OneMap: software for genetic mapping in outcrossing species","volume":"144","author":"Margarido","year":"2007","journal-title":"Hereditas"},{"key":"key\n\t\t\t\t20170627115354_evu261-B48","doi-asserted-by":"crossref","first-page":"277","DOI":"10.1508\/cytologia.75.277","article-title":"Karyotype analysis in octoploid and decaploid wild strawberries in Fragaria (Rosaceae)","volume":"75","author":"Nathewet","year":"2010","journal-title":"Cytologia"},{"key":"key\n\t\t\t\t20170627115354_evu261-B49","doi-asserted-by":"crossref","first-page":"17","DOI":"10.1016\/j.ympev.2012.08.026","article-title":"Insights into phylogeny, sex function and age of Fragaria based on whole chloroplast genome sequencing","volume":"66","author":"Njuguna","year":"2013","journal-title":"Mol Phylogenet Evol."},{"key":"key\n\t\t\t\t20170627115354_evu261-B50","doi-asserted-by":"crossref","first-page":"401","DOI":"10.1146\/annurev.genet.34.1.401","article-title":"Polyploid incidence and evolution","volume":"34","author":"Otto","year":"2000","journal-title":"Annu Rev Genet."},{"key":"key\n\t\t\t\t20170627115354_evu261-B51","doi-asserted-by":"crossref","first-page":"1809","DOI":"10.1534\/g3.113.007229","article-title":"Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing","volume":"3","author":"Page","year":"2013","journal-title":"G3"},{"key":"key\n\t\t\t\t20170627115354_evu261-B52","doi-asserted-by":"crossref","first-page":"10007","DOI":"10.1073\/pnas.1321897111","article-title":"Detection of genomic variations and DNA polymorphisms and impact on analysis of meiotic recombination and genetic mapping","volume":"111","author":"Qi","year":"2014","journal-title":"Proc Natl Acad Sci U S A."},{"key":"key\n\t\t\t\t20170627115354_evu261-B53","doi-asserted-by":"crossref","first-page":"e1000391","DOI":"10.1371\/journal.pgen.1000391","article-title":"Turnover of sex chromosomes in the stickleback fishes (gasterosteidae)","volume":"5","author":"Ross","year":"2009","journal-title":"PLoS Genet."},{"key":"key\n\t\t\t\t20170627115354_evu261-B54","doi-asserted-by":"crossref","first-page":"2045","DOI":"10.1534\/genetics.107.083840","article-title":"Comparative genetic mapping between octoploid and diploid Fragaria species reveals a high level of colinearity between their genomes and the essentially disomic behavior of the cultivated octoploid strawberry","volume":"179","author":"Rousseau-Gueutin","year":"2008","journal-title":"Genetics"},{"key":"key\n\t\t\t\t20170627115354_evu261-B55","doi-asserted-by":"crossref","first-page":"515","DOI":"10.1016\/j.ympev.2008.12.024","article-title":"Tracking the evolutionary history of polyploidy in Fragaria L. (strawberry): new insights from phylogenetic analyses of low-copy nuclear genes","volume":"51","author":"Rousseau-Gueutin","year":"2009","journal-title":"Mol Phylogenet Evol."},{"key":"key\n\t\t\t\t20170627115354_evu261-B56","doi-asserted-by":"crossref","first-page":"123","DOI":"10.1111\/j.1469-8137.2009.03093.x","article-title":"Homoeologous nonreciprocal recombination in polyploid cotton","volume":"186","author":"Salmon","year":"2010","journal-title":"New Phytol."},{"key":"key\n\t\t\t\t20170627115354_evu261-B57","doi-asserted-by":"crossref","first-page":"165","DOI":"10.3835\/plantgenome2011.05.0014","article-title":"Simple sequence repeat marker development and mapping targeted to previously unmapped regions of the strawberry genome sequence","volume":"4","author":"Sargent","year":"2011","journal-title":"Plant Genome"},{"key":"key\n\t\t\t\t20170627115354_evu261-B58","doi-asserted-by":"crossref","first-page":"1229","DOI":"10.1007\/s00122-011-1782-6","article-title":"A microsatellite linkage map for the cultivated strawberry (Fragaria \u00d7 ananassa) suggests extensive regions of homozygosity in the genome that may have resulted from breeding and selection","volume":"124","author":"Sargent","year":"2012","journal-title":"Theor Appl Genet."},{"key":"key\n\t\t\t\t20170627115354_evu261-B59","doi-asserted-by":"crossref","first-page":"31","DOI":"10.1146\/annurev.ge.10.120176.000335","article-title":"Genetic control of chromosome pairing in wheat","volume":"10","author":"Sears","year":"1976","journal-title":"Annu Rev Genet."},{"key":"key\n\t\t\t\t20170627115354_evu261-B60","doi-asserted-by":"crossref","first-page":"221","DOI":"10.2307\/2440801","article-title":"Origin of Fragaria polyploids. I. Cytological analysis","volume":"54","author":"Senanayake","year":"1967","journal-title":"Am J Bot."},{"key":"key\n\t\t\t\t20170627115354_evu261-B61","doi-asserted-by":"crossref","first-page":"633","DOI":"10.1093\/molbev\/msg065","article-title":"Rate variation among nuclear genes and the age of polyploidy in Gossypium","volume":"20","author":"Senchina","year":"2003","journal-title":"Mol Biol Evol."},{"key":"key\n\t\t\t\t20170627115354_evu261-B62","doi-asserted-by":"crossref","first-page":"4024","DOI":"10.1111\/j.1365-294X.2009.04329.x","article-title":"The allopolyploid Arabidopsis kamchatica originated from multiple individuals of Arabidopsis lyrata and Arabidopsis halleri","volume":"18","author":"Shimizu-Inatsugi","year":"2009","journal-title":"Mol Ecol."},{"key":"key\n\t\t\t\t20170627115354_evu261-B63","doi-asserted-by":"crossref","first-page":"109","DOI":"10.1038\/ng.740","article-title":"The genome of woodland strawberry (Fragaria vesca)","volume":"43","author":"Shulaev","year":"2011","journal-title":"Nat Genet."},{"key":"key\n\t\t\t\t20170627115354_evu261-B64","doi-asserted-by":"crossref","first-page":"1114","DOI":"10.1111\/j.1558-5646.2010.01189.x","article-title":"Genetic architecture of sexual dimorphism in a subdioecious plant with a proto-sex chromosome","volume":"65","author":"Spigler","year":"2011","journal-title":"Evolution"},{"key":"key\n\t\t\t\t20170627115354_evu261-B65","doi-asserted-by":"crossref","first-page":"S107","DOI":"10.1093\/jhered\/esq001","article-title":"Comparative mapping reveals autosomal origin of sex chromosome in octoploid Fragaria virginiana","volume":"101","author":"Spigler","year":"2010","journal-title":"J Hered."},{"key":"key\n\t\t\t\t20170627115354_evu261-B66","doi-asserted-by":"crossref","first-page":"507","DOI":"10.1038\/hdy.2008.100","article-title":"Genetic mapping of sex determination in a wild strawberry, Fragaria virginiana, reveals earliest form of sex chromosome","volume":"101","author":"Spigler","year":"2008","journal-title":"Heredity"},{"key":"key\n\t\t\t\t20170627115354_evu261-B67","doi-asserted-by":"crossref","first-page":"2688","DOI":"10.1093\/bioinformatics\/btl446","article-title":"RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models","volume":"22","author":"Stamatakis","year":"2006","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170627115354_evu261-B68","doi-asserted-by":"crossref","first-page":"1341","DOI":"10.1534\/g3.113.006288","article-title":"Targeted sequence capture provides insight into genome structure and genetics of male sterility in a gynodioecious diploid strawberry, Fragaria vesca ssp. bracteata (Rosaceae)","volume":"3","author":"Tennessen","year":"2013","journal-title":"G3"},{"key":"key\n\t\t\t\t20170627115354_evu261-B69","doi-asserted-by":"crossref","first-page":"967","DOI":"10.1534\/genetics.104.033209","article-title":"Detection of chromosomal rearrangements derived from homologous recombination in four mapping populations of Brassica napus L","volume":"169","author":"Udall","year":"2005","journal-title":"Genetics"},{"key":"key\n\t\t\t\t20170627115354_evu261-B70","doi-asserted-by":"crossref","first-page":"55","DOI":"10.1186\/1471-2229-14-55","article-title":"Genomic rearrangements and signatures of breeding in the allo-octoploid strawberry as revealed through an allele dose based SSR linkage map","volume":"14","author":"van Dijk","year":"2014","journal-title":"BMC Plant Biol."},{"key":"key\n\t\t\t\t20170627115354_evu261-B71","doi-asserted-by":"crossref","first-page":"1285","DOI":"10.1093\/genetics\/148.3.1285","article-title":"Effect of the pairing gene Ph1 on centromere misdivision in common wheat","volume":"148","author":"Vega","year":"1998","journal-title":"Genetics"},{"key":"key\n\t\t\t\t20170627115354_evu261-B72","doi-asserted-by":"crossref","first-page":"1026","DOI":"10.1101\/gr.087288.108","article-title":"Comparative inference of illegitimate recombination between rice and sorghum duplicated genes produced by polyploidization","volume":"19","author":"Wang","year":"2009","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t20170627115354_evu261-B73","doi-asserted-by":"crossref","first-page":"280","DOI":"10.1073\/pnas.92.1.280","article-title":"Bidirectional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium)","volume":"92","author":"Wendel","year":"1995","journal-title":"Proc Natl Acad Sci U S A."},{"key":"key\n\t\t\t\t20170627115354_evu261-B74","doi-asserted-by":"crossref","first-page":"973","DOI":"10.1038\/nrg2165","article-title":"A unified classification system for eukaryotic transposable elements","volume":"8","author":"Wicker","year":"2007","journal-title":"Nat Rev Genet."},{"key":"key\n\t\t\t\t20170627115354_evu261-B75","doi-asserted-by":"crossref","first-page":"e01426","DOI":"10.7554\/eLife.01426","article-title":"The genomic landscape of meiotic crossovers and gene conversions in Arabidopsis thaliana","volume":"2","author":"Wijnker","year":"2013","journal-title":"Elife"},{"key":"key\n\t\t\t\t20170627115354_evu261-B76","doi-asserted-by":"crossref","first-page":"13875","DOI":"10.1073\/pnas.0811575106","article-title":"The frequency of polyploid speciation in vascular plants","volume":"106","author":"Wood","year":"2009","journal-title":"Proc Natl Acad Sci U S A."},{"key":"key\n\t\t\t\t20170627115354_evu261-B77","doi-asserted-by":"crossref","first-page":"e1000409","DOI":"10.1371\/journal.pbio.1000409","article-title":"Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homeologs","volume":"8","author":"Woodhouse","year":"2010","journal-title":"PLoS Biol."},{"key":"key\n\t\t\t\t20170627115354_evu261-B78","doi-asserted-by":"crossref","first-page":"422","DOI":"10.1093\/genetics\/16.5.422","article-title":"Genetic and cytological studies on Fragaria","volume":"16","author":"Yarnell","year":"1931","journal-title":"Genetics"},{"key":"key\n\t\t\t\t20170627115354_evu261-B79","doi-asserted-by":"crossref","first-page":"37","DOI":"10.1534\/genetics.110.122473","article-title":"Karyotype and identification of all homoeologous chromosomes of allopolyploid Brassica napus and its diploid progenitors","volume":"187","author":"Xiong","year":"2011","journal-title":"Genetics"}],"container-title":["Genome Biology and Evolution"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/gbe\/article-pdf\/6\/12\/3295\/17922167\/evu261.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,4,23]],"date-time":"2022-04-23T22:22:39Z","timestamp":1650752559000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/gbe\/article-lookup\/doi\/10.1093\/gbe\/evu261"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,12]]},"references-count":80,"journal-issue":{"issue":"12","published-online":{"date-parts":[[2014,12,4]]},"published-print":{"date-parts":[[2014,12]]}},"URL":"https:\/\/doi.org\/10.1093\/gbe\/evu261","relation":{},"ISSN":["1759-6653"],"issn-type":[{"value":"1759-6653","type":"electronic"}],"subject":[],"published":{"date-parts":[[2014,12]]}}}