{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,8]],"date-time":"2025-11-08T12:55:30Z","timestamp":1762606530679},"reference-count":85,"publisher":"Oxford University Press (OUP)","issue":"1","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2015,1]]},"DOI":"10.1093\/gbe\/evu267","type":"journal-article","created":{"date-parts":[[2014,12,19]],"date-time":"2014-12-19T10:48:33Z","timestamp":1418986113000},"page":"106-119","source":"Crossref","is-referenced-by-count":36,"title":["Genome-Wide Patterns of Genetic Polymorphism and Signatures of Selection in Plasmodium vivax"],"prefix":"10.1093","volume":"7","author":[{"given":"Omar E.","family":"Cornejo","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"David","family":"Fisher","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ananias A.","family":"Escalante","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2014,12,17]]},"reference":[{"key":"key\n\t\t\t\t20170627120937_evu267-B1","doi-asserted-by":"crossref","first-page":"e26623","DOI":"10.1371\/journal.pone.0026623","article-title":"Clinical proteomics of the neglected human malarial parasite Plasmodium vivax","volume":"6","author":"Acharya","year":"2011","journal-title":"PLoS One"},{"key":"key\n\t\t\t\t20170627120937_evu267-B2","doi-asserted-by":"crossref","first-page":"e350","DOI":"10.1371\/journal.pmed.0040350","article-title":"Towards a vaccine against Plasmodium vivax malaria","volume":"4","author":"Beeson","year":"2007","journal-title":"PLoS Med."},{"key":"key\n\t\t\t\t20170627120937_evu267-B3","doi-asserted-by":"crossref","first-page":"519","DOI":"10.1038\/356519a0","article-title":"Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster","volume":"356","author":"Begun","year":"1992","journal-title":"Nature"},{"key":"key\n\t\t\t\t20170627120937_evu267-B4","doi-asserted-by":"crossref","first-page":"e310","DOI":"10.1371\/journal.pbio.0050310","article-title":"Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans","volume":"5","author":"Begun","year":"2007","journal-title":"PLoS Biol."},{"key":"key\n\t\t\t\t20170627120937_evu267-B5","doi-asserted-by":"crossref","first-page":"732","DOI":"10.1016\/j.pbi.2004.09.003","article-title":"Consistent over-estimation of gene number in complex plant genomes","volume":"7","author":"Bennetzen","year":"2004","journal-title":"Curr Opin Plant Biol."},{"key":"key\n\t\t\t\t20170627120937_evu267-B6","doi-asserted-by":"crossref","first-page":"1350","DOI":"10.1093\/molbev\/msh134","article-title":"The genomic rate of adaptive amino acid substitution in Drosophila","volume":"21","author":"Bierne","year":"2004","journal-title":"Mol Biol Evol."},{"key":"key\n\t\t\t\t20170627120937_evu267-B7","doi-asserted-by":"crossref","first-page":"171","DOI":"10.1007\/s12199-010-0184-8","article-title":"Risk analysis of the re-emergence of Plasmodium vivax malaria in Japan using a stochastic transmission model","volume":"16","author":"Bitoh","year":"2011","journal-title":"Environ Health Prev Med."},{"key":"key\n\t\t\t\t20170627120937_evu267-B8","doi-asserted-by":"crossref","first-page":"377","DOI":"10.1128\/CMR.00051-10","article-title":"Epidemiology and infectivity of Plasmodium falciparum and Plasmodium vivax gametocytes in relation to malaria control and elimination","volume":"24","author":"Bousema","year":"2011","journal-title":"Clin Microbiol Rev."},{"key":"key\n\t\t\t\t20170627120937_evu267-B9","doi-asserted-by":"crossref","first-page":"79","DOI":"10.1124\/jpet.103.062984","article-title":"Primaquine-induced hemolytic anemia: susceptibility of normal versus glutathione-depleted rat erythrocytes to 5-hydroxyprimaquine","volume":"309","author":"Bowman","year":"2004","journal-title":"J Pharmacol Exp Ther."},{"key":"key\n\t\t\t\t20170627120937_evu267-B10","doi-asserted-by":"crossref","first-page":"253","DOI":"10.4269\/ajtmh.1937.s1-17.253","article-title":"On the infectiousness of patients infected with Plasmodium vivax and Plasmodium falciparum","volume":"17","author":"Boyd","year":"1937","journal-title":"Am J Trop Med Hyg."},{"key":"key\n\t\t\t\t20170627120937_evu267-B11","doi-asserted-by":"crossref","first-page":"e1000083","DOI":"10.1371\/journal.pgen.1000083","article-title":"Assessing the evolutionary impact of amino acid mutations in the human genome","volume":"4","author":"Boyko","year":"2008","journal-title":"PLoS Genet."},{"key":"key\n\t\t\t\t20170627120937_evu267-B12","doi-asserted-by":"crossref","first-page":"1153","DOI":"10.1038\/nature04240","article-title":"Natural selection on protein-coding genes in the human genome","volume":"437","author":"Bustamante","year":"2005","journal-title":"Nature"},{"key":"key\n\t\t\t\t20170627120937_evu267-B13","doi-asserted-by":"crossref","first-page":"203","DOI":"10.1016\/B978-0-12-407826-0.00005-9","article-title":"Genomics, population genetics and evolutionary history of Plasmodium vivax","volume":"81","author":"Carlton","year":"2013","journal-title":"Adv Parasitol."},{"key":"key\n\t\t\t\t20170627120937_evu267-B87","doi-asserted-by":"crossref","first-page":"757","DOI":"10.1038\/nature07327","article-title":"Comparative genomics of the neglected human malaria parasite Plasmodium vivax","volume":"455","author":"Carlton","year":"2008","journal-title":"Nature"},{"key":"key\n\t\t\t\t20170627120937_evu267-B14","doi-asserted-by":"crossref","first-page":"68","DOI":"10.1186\/1475-2875-11-68","article-title":"Genetic diversity and population structure of genes encoding vaccine candidate antigens of Plasmodium vivax","volume":"11","author":"Chenet","year":"2012","journal-title":"Malar J."},{"key":"key\n\t\t\t\t20170627120937_evu267-B86","article-title":"The primate malarias. Washington, DC: US Government Printing Office","author":"Coatney","year":"1971"},{"key":"key\n\t\t\t\t20170627120937_evu267-B16","doi-asserted-by":"crossref","first-page":"619832","DOI":"10.1155\/2008\/619832","article-title":"Blast2GO: a comprehensive suite for functional analysis in plant genomics","volume":"2008","author":"Conesa","year":"2008","journal-title":"Int J Plant Genomics."},{"key":"key\n\t\t\t\t20170627120937_evu267-B17","doi-asserted-by":"crossref","first-page":"3674","DOI":"10.1093\/bioinformatics\/bti610","article-title":"Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research","volume":"21","author":"Conesa","year":"2005","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170627120937_evu267-B18","doi-asserted-by":"crossref","first-page":"558","DOI":"10.1016\/j.pt.2006.09.007","article-title":"The origin and age of Plasmodium vivax","volume":"22","author":"Cornejo","year":"2006","journal-title":"Trends Parasitol."},{"key":"key\n\t\t\t\t20170627120937_evu267-B19","doi-asserted-by":"crossref","first-page":"e29137","DOI":"10.1371\/journal.pone.0029137","article-title":"The origins of African Plasmodium vivax; insights from mitochondrial genome sequencing","volume":"6","author":"Culleton","year":"2011","journal-title":"PLoS One"},{"key":"key\n\t\t\t\t20170627120937_evu267-B20","doi-asserted-by":"crossref","first-page":"e1002806","DOI":"10.1371\/journal.pcbi.1002806","article-title":"SnIPRE: selection inference using a Poisson random effects model","volume":"8","author":"Eilertson","year":"2012","journal-title":"PLoS Comput Biol."},{"key":"key\n\t\t\t\t20170627120937_evu267-B21","doi-asserted-by":"crossref","first-page":"388","DOI":"10.1016\/j.pt.2004.06.002","article-title":"Assessing the effect of natural selection in malaria parasites","volume":"20","author":"Escalante","year":"2004","journal-title":"Trends Parasitol."},{"key":"key\n\t\t\t\t20170627120937_evu267-B22","doi-asserted-by":"crossref","first-page":"189","DOI":"10.1093\/genetics\/149.1.189","article-title":"Genetic polymorphism and natural selection in the malaria parasite Plasmodium falciparum","volume":"149","author":"Escalante","year":"1998","journal-title":"Genetics"},{"key":"key\n\t\t\t\t20170627120937_evu267-B23","doi-asserted-by":"crossref","first-page":"1980","DOI":"10.1073\/pnas.0409652102","article-title":"A monkey's tale: the origin of Plasmodium vivax as a human malaria parasite","volume":"102","author":"Escalante","year":"2005","journal-title":"Proc Natl Acad Sci U S A."},{"key":"key\n\t\t\t\t20170627120937_evu267-B24","doi-asserted-by":"crossref","first-page":"815","DOI":"10.1093\/emboj\/21.4.815","article-title":"A central role for Plasmodium falciparum subtelomeric regions in spatial positioning and telomere length regulation","volume":"21","author":"Figueiredo","year":"2002","journal-title":"EMBO J."},{"key":"key\n\t\t\t\t20170627120937_evu267-B25","doi-asserted-by":"crossref","first-page":"e1814","DOI":"10.1371\/journal.pntd.0001814","article-title":"A long neglected world malaria map: Plasmodium vivax endemicity in 2010","volume":"6","author":"Gething","year":"2012","journal-title":"PLoS Negl Trop Dis."},{"key":"key\n\t\t\t\t20170627120937_evu267-B26","doi-asserted-by":"crossref","first-page":"424","DOI":"10.1093\/molbev\/msg050","article-title":"Estimation of divergence times for major lineages of primate species","volume":"20","author":"Glazko","year":"2003","journal-title":"Mol Biol Evol."},{"key":"key\n\t\t\t\t20170627120937_evu267-B27","doi-asserted-by":"crossref","first-page":"1389","DOI":"10.1534\/genetics.111.132654","article-title":"Quantifying the variation in the effective population size within a genome","volume":"189","author":"Gossmann","year":"2011","journal-title":"Genetics"},{"key":"key\n\t\t\t\t20170627120937_evu267-B28","doi-asserted-by":"crossref","first-page":"1855","DOI":"10.1098\/rspb.2001.1759","article-title":"Very large long-term effective population size in the virulent human malaria parasite Plasmodium falciparum","volume":"268","author":"Hughes","year":"2001","journal-title":"Proc Biol Sci."},{"key":"key\n\t\t\t\t20170627120937_evu267-B29","first-page":"13","article-title":"Codon usage and tRNA content in unicellular and multicellular organisms","volume":"2","author":"Ikemura","year":"1985","journal-title":"Mol Biol Evol."},{"key":"key\n\t\t\t\t20170627120937_evu267-B30","doi-asserted-by":"crossref","first-page":"1725","DOI":"10.1534\/genetics.106.056242","article-title":"Modified Hudson-Kreitman-Aguade test and two-dimensional evaluation of neutrality tests","volume":"173","author":"Innan","year":"2006","journal-title":"Genetics"},{"key":"key\n\t\t\t\t20170627120937_evu267-B31","doi-asserted-by":"crossref","first-page":"120","DOI":"10.1038\/ng1931","article-title":"Genome variation and evolution of the malaria parasite Plasmodium falciparum","volume":"39","author":"Jeffares","year":"2007","journal-title":"Nat Genet."},{"key":"key\n\t\t\t\t20170627120937_evu267-B32","doi-asserted-by":"crossref","first-page":"1129","DOI":"10.1002\/bies.10353","article-title":"Small GTPases and the evolution of the eukaryotic cell","volume":"25","author":"Jekely","year":"2003","journal-title":"Bioessays"},{"key":"key\n\t\t\t\t20170627120937_evu267-B33","doi-asserted-by":"crossref","first-page":"1733","DOI":"10.1093\/molbev\/msi168","article-title":"Mitochondrial genome sequences support ancient population expansion in Plasmodium vivax","volume":"22","author":"Jongwutiwes","year":"2005","journal-title":"Mol Biol Evol."},{"key":"key\n\t\t\t\t20170627120937_evu267-B34","doi-asserted-by":"crossref","first-page":"1245","DOI":"10.1093\/molbev\/msn073","article-title":"Local adaptation and vector-mediated population structure in Plasmodium vivax malaria","volume":"25","author":"Joy","year":"2008","journal-title":"Mol Biol Evol."},{"key":"key\n\t\t\t\t20170627120937_evu267-B35","doi-asserted-by":"crossref","first-page":"e1000924","DOI":"10.1371\/journal.pgen.1000924","article-title":"Evidence that adaptation in Drosophila is not limited by mutation at single sites","volume":"6","author":"Karasov","year":"2010","journal-title":"PLoS Genet."},{"key":"key\n\t\t\t\t20170627120937_evu267-B36","doi-asserted-by":"crossref","first-page":"e57","DOI":"10.1371\/journal.ppat.0020057","article-title":"A systematic map of genetic variation in Plasmodium falciparum","volume":"2","author":"Kidgell","year":"2006","journal-title":"PLoS Pathog."},{"key":"key\n\t\t\t\t20170627120937_evu267-B37","doi-asserted-by":"crossref","first-page":"762","DOI":"10.7205\/MILMED-D-01-6208","article-title":"Malaria in the Republic of Korea, 1993-2007. Variables related to re-emergence and persistence of Plasmodium vivax among Korean populations and U.S. forces in Korea","volume":"174","author":"Kim","year":"2009","journal-title":"Mil Med."},{"key":"key\n\t\t\t\t20170627120937_evu267-B38","doi-asserted-by":"crossref","first-page":"383","DOI":"10.2307\/2347802","article-title":"Computing regression quantiles","volume":"36","author":"Koenker","year":"1987","journal-title":"Appl Statist."},{"key":"key\n\t\t\t\t20170627120937_evu267-B39","doi-asserted-by":"crossref","first-page":"673","DOI":"10.1093\/biomet\/81.4.673","article-title":"Quantile smoothing splines","volume":"81","author":"Koenker","year":"1994","journal-title":"Biometrika"},{"key":"key\n\t\t\t\t20170627120937_evu267-B40","doi-asserted-by":"crossref","first-page":"1583","DOI":"10.1111\/1468-0262.00342","article-title":"Inference on the quantile regression process","volume":"70","author":"Koenker","year":"2002","journal-title":"Econometrica"},{"key":"key\n\t\t\t\t20170627120937_evu267-B41","doi-asserted-by":"crossref","first-page":"e44","DOI":"10.1371\/journal.ppat.0010044","article-title":"A Plasmodium whole-genome synteny map: indels and synteny breakpoints as foci for species-specific genes","volume":"1","author":"Kooij","year":"2005","journal-title":"PLoS Pathog."},{"key":"key\n\t\t\t\t20170627120937_evu267-B42","doi-asserted-by":"crossref","first-page":"1911","DOI":"10.1016\/j.meegid.2012.07.023","article-title":"Analysis of immunogenicity of different protein groups from malaria parasite Plasmodium falciparum","volume":"12","author":"Krzyczmonik","year":"2012","journal-title":"Infect Genet Evol."},{"key":"key\n\t\t\t\t20170627120937_evu267-B43","doi-asserted-by":"crossref","first-page":"1511","DOI":"10.1128\/EC.00173-07","article-title":"Antigenic variation in Plasmodium falciparum: gene organization and regulation of the var multigene family","volume":"6","author":"Kyes","year":"2007","journal-title":"Eukaryot Cell."},{"key":"key\n\t\t\t\t20170627120937_evu267-B44","doi-asserted-by":"crossref","first-page":"2178","DOI":"10.1101\/gr.1224503","article-title":"OrthoMCL: identification of ortholog groups for eukaryotic genomes","volume":"13","author":"Li","year":"2003","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t20170627120937_evu267-B45","doi-asserted-by":"crossref","first-page":"1451","DOI":"10.1093\/bioinformatics\/btp187","article-title":"DnaSP v5: a software for comprehensive analysis of DNA polymorphism data","volume":"25","author":"Librado","year":"2009","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170627120937_evu267-B46","doi-asserted-by":"crossref","first-page":"3346","DOI":"10.1038\/ncomms4346","article-title":"African origin of the malaria parasite Plasmodium vivax","volume":"5","author":"Liu","year":"2014","journal-title":"Nat Commun."},{"key":"key\n\t\t\t\t20170627120937_evu267-B47","doi-asserted-by":"crossref","first-page":"667","DOI":"10.1126\/science.1125129","article-title":"Regulation of sexual development of Plasmodium by translational repression","volume":"313","author":"Mair","year":"2006","journal-title":"Science"},{"key":"key\n\t\t\t\t20170627120937_evu267-B48","doi-asserted-by":"crossref","first-page":"150","DOI":"10.1016\/j.cub.2003.12.055","article-title":"Selection on codon usage in Drosophila americana","volume":"14","author":"Maside","year":"2004","journal-title":"Curr Biol."},{"key":"key\n\t\t\t\t20170627120937_evu267-B49","doi-asserted-by":"crossref","first-page":"652","DOI":"10.1038\/351652a0","article-title":"Adaptive protein evolution at the Adh locus in Drosophila","volume":"351","author":"McDonald","year":"1991","journal-title":"Nature"},{"key":"key\n\t\t\t\t20170627120937_evu267-B50","doi-asserted-by":"crossref","first-page":"648","DOI":"10.1038\/ng.2624","article-title":"Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia","volume":"45","author":"Miotto","year":"2013","journal-title":"Nat Genet."},{"key":"key\n\t\t\t\t20170627120937_evu267-B51","doi-asserted-by":"crossref","first-page":"1686","DOI":"10.1093\/molbev\/msi160","article-title":"Host switch leads to emergence of Plasmodium vivax malaria in humans","volume":"22","author":"Mu","year":"2005","journal-title":"Mol Biol Evol."},{"key":"key\n\t\t\t\t20170627120937_evu267-B52","article-title":"Accelerated diversification of non-human primate malarias in Southeast Asia: adaptive radiation or geographic speciation?","author":"Muehlenbein","year":"2014","journal-title":"Mol Biol Evol."},{"key":"key\n\t\t\t\t20170627120937_evu267-B53","doi-asserted-by":"crossref","first-page":"555","DOI":"10.1016\/S1473-3099(09)70177-X","article-title":"Key gaps in the knowledge of Plasmodium vivax, a neglected human malaria parasite","volume":"9","author":"Mueller","year":"2009","journal-title":"Lancet Infect Dis."},{"key":"key\n\t\t\t\t20170627120937_evu267-B54","doi-asserted-by":"crossref","first-page":"1046","DOI":"10.1038\/ng.2373","article-title":"The malaria parasite Plasmodium vivax exhibits greater genetic diversity than Plasmodium falciparum","volume":"44","author":"Neafsey","year":"2012","journal-title":"Nat Genet."},{"key":"key\n\t\t\t\t20170627120937_evu267-B55","doi-asserted-by":"crossref","first-page":"197","DOI":"10.1146\/annurev.genet.39.073003.112420","article-title":"Molecular signatures of natural selection","volume":"39","author":"Nielsen","year":"2005","journal-title":"Annu Rev Genet."},{"key":"key\n\t\t\t\t20170627120937_evu267-B56","doi-asserted-by":"crossref","first-page":"857","DOI":"10.1038\/nrg2187","article-title":"Recent and ongoing selection in the human genome","volume":"8","author":"Nielsen","year":"2007","journal-title":"Nat Rev Genet."},{"key":"key\n\t\t\t\t20170627120937_evu267-B57","doi-asserted-by":"crossref","first-page":"1390","DOI":"10.1093\/oxfordjournals.molbev.a004201","article-title":"Accounting for background nucleotide composition when measuring codon usage bias","volume":"19","author":"Novembre","year":"2002","journal-title":"Mol Biol Evol."},{"key":"key\n\t\t\t\t20170627120937_evu267-B58","doi-asserted-by":"crossref","first-page":"978","DOI":"10.1016\/j.meegid.2012.02.009","article-title":"Evidence of purifying selection on merozoite surface protein 8 (MSP8) and 10 (MSP10) in Plasmodium spp","volume":"12","author":"Pacheco","year":"2012","journal-title":"Infect Genet Evol."},{"key":"key\n\t\t\t\t20170627120937_evu267-B59","doi-asserted-by":"crossref","first-page":"e34990","DOI":"10.1371\/journal.pone.0034990","article-title":"The origin of malarial parasites in orangutans","volume":"7","author":"Pacheco","year":"2012","journal-title":"PLoS One"},{"key":"key\n\t\t\t\t20170627120937_evu267-B60","doi-asserted-by":"crossref","first-page":"799","DOI":"10.1038\/nature07306","article-title":"The genome of the simian and human malaria parasite Plasmodium knowlesi","volume":"455","author":"Pain","year":"2008","journal-title":"Nature"},{"key":"key\n\t\t\t\t20170627120937_evu267-B61","doi-asserted-by":"crossref","first-page":"1551","DOI":"10.1016\/j.ijpara.2007.05.009","article-title":"Production of erythropoietic cells in vitro for continuous culture of Plasmodium vivax","volume":"37","author":"Panichakul","year":"2007","journal-title":"Int J Parasitol."},{"key":"key\n\t\t\t\t20170627120937_evu267-B62","doi-asserted-by":"crossref","first-page":"e168","DOI":"10.1371\/journal.pgen.0020168","article-title":"Forces shaping the fastest evolving regions in the human genome","volume":"2","author":"Pollard","year":"2006","journal-title":"PLoS Genet."},{"key":"key\n\t\t\t\t20170627120937_evu267-B63","doi-asserted-by":"crossref","first-page":"3033","DOI":"10.1093\/molbev\/msr125","article-title":"A random effects branch-site model for detecting episodic diversifying selection","volume":"28","author":"Pond","year":"2011","journal-title":"Mol Biol Evol."},{"key":"key\n\t\t\t\t20170627120937_evu267-B64","doi-asserted-by":"crossref","first-page":"3063","DOI":"10.1016\/j.jprot.2011.10.018","article-title":"Serum proteome analysis of vivax malaria: an insight into the disease pathogenesis and host immune response","volume":"75","author":"Ray","year":"2012","journal-title":"J Proteomics."},{"key":"key\n\t\t\t\t20170627120937_evu267-B65","doi-asserted-by":"crossref","first-page":"e1001306","DOI":"10.1371\/journal.ppat.1001306","article-title":"Antigenic variation in Plasmodium falciparum malaria involves a highly structured switching pattern","volume":"7","author":"Recker","year":"2011","journal-title":"PLoS Pathog."},{"key":"key\n\t\t\t\t20170627120937_evu267-B66","doi-asserted-by":"crossref","first-page":"172","DOI":"10.1016\/j.ympev.2014.05.013","article-title":"The origin and diversification of the merozoite surface protein 3 (msp3) multi-gene family in Plasmodium vivax and related parasites","volume":"78","author":"Rice","year":"2014","journal-title":"Mol Phylogenet Evol."},{"key":"key\n\t\t\t\t20170627120937_evu267-B67","first-page":"621","article-title":"DnaSP, DNA sequence polymorphism: an interactive program for estimating population genetics parameters from DNA sequence data","volume":"11","author":"Rozas","year":"1995","journal-title":"Comput Appl Biosci."},{"key":"key\n\t\t\t\t20170627120937_evu267-B68","doi-asserted-by":"crossref","first-page":"4069","DOI":"10.1002\/j.1460-2075.1996.tb00780.x","article-title":"The var genes of Plasmodium falciparum are located in the subtelomeric region of most chromosomes","volume":"15","author":"Rubio","year":"1996","journal-title":"EMBO J."},{"key":"key\n\t\t\t\t20170627120937_evu267-B69","doi-asserted-by":"crossref","first-page":"R12","DOI":"10.1186\/gb-2006-7-2-r12","article-title":"Lineage-specific expansion of proteins exported to erythrocytes in malaria parasites","volume":"7","author":"Sargeant","year":"2006","journal-title":"Genome Biol."},{"key":"key\n\t\t\t\t20170627120937_evu267-B70","doi-asserted-by":"crossref","first-page":"15","DOI":"10.1186\/1475-2875-12-15","article-title":"Fitness components and natural selection: why are there different patterns on the emergence of drug resistance in Plasmodium falciparum and Plasmodium vivax?","volume":"12","author":"Schneider","year":"2013","journal-title":"Malar J."},{"key":"key\n\t\t\t\t20170627120937_evu267-B71","doi-asserted-by":"crossref","first-page":"585","DOI":"10.1016\/j.trstmh.2004.01.003","article-title":"Risk of Plasmodium vivax malaria reintroduction in Uzbekistan: genetic characterization of parasites and status of potential malaria vectors in the Surkhandarya region","volume":"98","author":"Severini","year":"2004","journal-title":"Trans R Soc Trop Med Hyg."},{"key":"key\n\t\t\t\t20170627120937_evu267-B72","doi-asserted-by":"crossref","first-page":"1141","DOI":"10.1093\/nar\/gki242","article-title":"Variation in the strength of selected codon usage bias among bacteria","volume":"33","author":"Sharp","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170627120937_evu267-B73","doi-asserted-by":"crossref","first-page":"1022","DOI":"10.1038\/4151022a","article-title":"Adaptive protein evolution in Drosophila","volume":"415","author":"Smith","year":"2002","journal-title":"Nature"},{"key":"key\n\t\t\t\t20170627120937_evu267-B74","doi-asserted-by":"crossref","first-page":"68","DOI":"10.1186\/1475-2875-13-68","article-title":"First case of a naturally acquired human infection with Plasmodium cynomolgi","volume":"13","author":"Ta","year":"2014","journal-title":"Malar J."},{"key":"key\n\t\t\t\t20170627120937_evu267-B75","doi-asserted-by":"crossref","first-page":"1051","DOI":"10.1038\/ng.2375","article-title":"Plasmodium cynomolgi genome sequences provide insight into Plasmodium vivax and the monkey malaria clade","volume":"44","author":"Tachibana","year":"2012","journal-title":"Nat Genet."},{"key":"key\n\t\t\t\t20170627120937_evu267-B76","doi-asserted-by":"crossref","first-page":"240","DOI":"10.1073\/pnas.1211205110","article-title":"Genetic loci associated with delayed clearance of Plasmodium falciparum following artemisinin treatment in Southeast Asia","volume":"110","author":"Takala-Harrison","year":"2013","journal-title":"Proc Natl Acad Sci U S A."},{"key":"key\n\t\t\t\t20170627120937_evu267-B77","doi-asserted-by":"crossref","first-page":"2050","DOI":"10.1093\/molbev\/mst104","article-title":"The evolutionary history of Plasmodium vivax as inferred from mitochondrial genomes: parasite genetic diversity in the Americas","volume":"30","author":"Taylor","year":"2013","journal-title":"Mol Biol Evol."},{"key":"key\n\t\t\t\t20170627120937_evu267-B78","doi-asserted-by":"crossref","first-page":"e5568","DOI":"10.1371\/journal.pone.0005568","article-title":"Prospective identification of malaria parasite genes under balancing selection","volume":"4","author":"Tetteh","year":"2009","journal-title":"PLoS One"},{"issue":"17","key":"key\n\t\t\t\t20170627120937_evu267-B79","doi-asserted-by":"crossref","first-page":"2325","DOI":"10.1093\/bioinformatics\/btg316","article-title":"libsequence: a C++ class library for evolutionary genetic analysis","volume":"19","author":"Thornton","year":"2003","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170627120937_evu267-B80","doi-asserted-by":"crossref","first-page":"e653","DOI":"10.1371\/journal.pntd.0000653","article-title":"A systems-based analysis of Plasmodium vivax lifecycle transcription from human to mosquito","volume":"4","author":"Westenberger","year":"2010","journal-title":"PLoS Negl Trop Dis."},{"key":"key\n\t\t\t\t20170627120937_evu267-B81","doi-asserted-by":"crossref","first-page":"297","DOI":"10.1186\/1475-2875-10-297","article-title":"Determinants of relapse periodicity in Plasmodium vivax malaria","volume":"10","author":"White","year":"2011","journal-title":"Malar J."},{"key":"key\n\t\t\t\t20170627120937_evu267-B82","doi-asserted-by":"crossref","first-page":"23","DOI":"10.1016\/0378-1119(90)90491-9","article-title":"The \u2018effective number of codons' used in a gene","volume":"87","author":"Wright","year":"1990","journal-title":"Gene"},{"key":"key\n\t\t\t\t20170627120937_evu267-B83","doi-asserted-by":"crossref","first-page":"1230","DOI":"10.6026\/97320630081230","article-title":"Comparative genome analysis of six malarial parasites using codon usage bias based tools","volume":"8","author":"Yadav","year":"2012","journal-title":"Bioinformation"},{"key":"key\n\t\t\t\t20170627120937_evu267-B85","doi-asserted-by":"crossref","first-page":"2198","DOI":"10.1093\/molbev\/msq108","article-title":"Low-complexity regions in Plasmodium falciparum: missing links in the evolution of an extreme genome","volume":"27","author":"Zilversmit","year":"2010","journal-title":"Mol Biol Evol."}],"container-title":["Genome Biology and Evolution"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/gbe\/article-pdf\/7\/1\/106\/17924421\/evu267.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,4,24]],"date-time":"2022-04-24T17:00:58Z","timestamp":1650819658000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/gbe\/article-lookup\/doi\/10.1093\/gbe\/evu267"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,12,17]]},"references-count":85,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2014,12,17]]},"published-print":{"date-parts":[[2015,1]]}},"URL":"https:\/\/doi.org\/10.1093\/gbe\/evu267","relation":{},"ISSN":["1759-6653"],"issn-type":[{"value":"1759-6653","type":"electronic"}],"subject":[],"published":{"date-parts":[[2014,12,17]]}}}