{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,8]],"date-time":"2026-10-08T03:27:51Z","timestamp":1791430071299,"version":"4.3.3"},"reference-count":54,"publisher":"Oxford University Press (OUP)","issue":"6","license":[{"start":{"date-parts":[[2024,4,9]],"date-time":"2024-04-09T00:00:00Z","timestamp":1712620800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100004359","name":"Swedish Research Council","doi-asserted-by":"publisher","award":["K2014-68X-08266-27-4"],"award-info":[{"award-number":["K2014-68X-08266-27-4"]}],"id":[{"id":"10.13039\/501100004359","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100004359","name":"Swedish Research Council","doi-asserted-by":"publisher","award":["2017-00955"],"award-info":[{"award-number":["2017-00955"]}],"id":[{"id":"10.13039\/501100004359","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001729","name":"Swedish Foundation for Strategic Research","doi-asserted-by":"publisher","award":["SB12\/KF10-0088"],"award-info":[{"award-number":["SB12\/KF10-0088"]}],"id":[{"id":"10.13039\/501100001729","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Public Health Services"},{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["PO1 AI057788"],"award-info":[{"award-number":["PO1 AI057788"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["P30 NIH P30DK056338"],"award-info":[{"award-number":["P30 NIH P30DK056338"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Texas Medical Center Digestive Diseases Center","award":["T32 AI055413"],"award-info":[{"award-number":["T32 AI055413"]}]},{"name":"Baylor College of Medicine Comprehensive Cancer Training Program","award":["CPRIT RP160283"],"award-info":[{"award-number":["CPRIT RP160283"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2024,4,24]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>Human noroviruses, globally the main cause of viral gastroenteritis, show strain specific affinity for histo-blood group antigens (HBGA) and can successfully be propagated ex vivo in human intestinal enteroids (HIEs). HIEs established from jejunal stem cells of individuals with different ABO, Lewis and secretor geno- and phenotypes, show varying susceptibility to such infections. Using bottom-up glycoproteomic approaches we have defined and compared the N-linked glycans of glycoproteins of seven jejunal HIEs. Membrane proteins were extracted, trypsin digested, and glycopeptides enriched by hydrophilic interaction liquid chromatography and analyzed by nanoLC-MS\/MS. The Byonic software was used for glycopeptide identification followed by hands-on verifications and interpretations. Glycan structures and attachment sites were identified from MS2 spectra obtained by higher-energy collision dissociation through analysis of diagnostic saccharide oxonium ions (B-ions), stepwise glycosidic fragmentation of the glycans (Y-ions), and peptide sequence ions (b- and y-ions). Altogether 694 unique glycopeptides from 93 glycoproteins were identified. The N-glycans encompassed pauci- and oligomannose, hybrid- and complex-type structures. Notably, polyfucosylated HBGA-containing glycopeptides of the four glycoproteins tetraspanin-8, carcinoembryonic antigen-related cell adhesion molecule 5, sucrose-isomaltase and aminopeptidase N were especially prominent and were characterized in detail and related to donor ABO, Lewis and secretor types of each HIE. Virtually no sialylated N-glycans were identified for these glycoproteins suggesting that terminal sialylation was infrequent compared to fucosylation and HBGA biosynthesis. This approach gives unique site-specific information on the structural complexity of N-linked glycans of glycoproteins of human HIEs and provides a platform for future studies on the role of host glycoproteins in gastrointestinal infectious diseases.<\/jats:p>","DOI":"10.1093\/glycob\/cwae029","type":"journal-article","created":{"date-parts":[[2024,4,3]],"date-time":"2024-04-03T12:31:11Z","timestamp":1712147471000},"source":"Crossref","is-referenced-by-count":8,"title":["N-glycoproteomic analyses of human intestinal enteroids, varying in histo-blood group geno- and phenotypes, reveal a wide repertoire of fucosylated glycoproteins"],"prefix":"10.1093","volume":"34","author":[{"given":"Jonas","family":"Nilsson","sequence":"first","affiliation":[{"name":"Department of Laboratory Medicine , Institute of Biomedicine, , Bruna Str\u00e5ket 16, SE 413 45, Gothenburg , Sweden"},{"name":"University of Gothenburg, Sahlgrenska University Hospital , Institute of Biomedicine, , Bruna Str\u00e5ket 16, SE 413 45, Gothenburg , Sweden"},{"name":"Department of Clinical Chemistry, Region V\u00e4stra G\u00f6taland, Sahlgrenska University Hospital , Bruna Str\u00e5ket 16, SE 413 45, Gothenburg , Sweden"},{"name":"Proteomics Core Facilities , Sahlgrenska Academy, , Medicinaregatan 9E, SE 413 90, Gothenburg , Sweden"},{"name":"University of Gothenburg , Sahlgrenska Academy, , Medicinaregatan 9E, SE 413 90, Gothenburg , Sweden"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Inga","family":"Rimkute","sequence":"additional","affiliation":[{"name":"Department of Laboratory Medicine , Institute of Biomedicine, , Bruna Str\u00e5ket 16, SE 413 45, Gothenburg , Sweden"},{"name":"University of Gothenburg, Sahlgrenska University Hospital , Institute of Biomedicine, , Bruna Str\u00e5ket 16, SE 413 45, Gothenburg , Sweden"},{"name":"Department of Microbiology and Immunology , Institute of Biomedicine, , Medicinaregatan 7A, SE 413 90, Gothenburg , Sweden"},{"name":"University of Gothenburg , Institute of Biomedicine, , Medicinaregatan 7A, SE 413 90, Gothenburg , Sweden"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Carina","family":"Sihlbom","sequence":"additional","affiliation":[{"name":"Proteomics Core Facilities , Sahlgrenska Academy, , Medicinaregatan 9E, SE 413 90, Gothenburg , Sweden"},{"name":"University of Gothenburg , Sahlgrenska Academy, , Medicinaregatan 9E, SE 413 90, Gothenburg , Sweden"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Victoria R","family":"Tenge","sequence":"additional","affiliation":[{"name":"Department of Molecular Virology, Baylor College School of Medicine , One Baylor Plaza, Houston, TX 770 30 , United States"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shih-Ching","family":"Lin","sequence":"additional","affiliation":[{"name":"Department of Molecular Virology, Baylor College School of Medicine , One Baylor Plaza, Houston, TX 770 30 , United States"},{"name":"Present address: Department of Medicine, Washington University in St. Louis , St. Louis, MO , United States"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Robert L","family":"Atmar","sequence":"additional","affiliation":[{"name":"Department of Molecular Virology, Baylor College School of Medicine , One Baylor Plaza, Houston, TX 770 30 , United States"},{"name":"Department of Medicine, Baylor College of Medicine , One Baylor Plaza, Houston, TX 770 30 , United States"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mary K","family":"Estes","sequence":"additional","affiliation":[{"name":"Department of Molecular Virology, Baylor College School of Medicine , One Baylor Plaza, Houston, TX 770 30 , United States"},{"name":"Department of Medicine, Baylor College of Medicine , One Baylor Plaza, Houston, TX 770 30 , United States"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2616-0366","authenticated-orcid":false,"given":"G\u00f6ran","family":"Larson","sequence":"additional","affiliation":[{"name":"Department of Laboratory Medicine , Institute of Biomedicine, , Bruna Str\u00e5ket 16, SE 413 45, Gothenburg , Sweden"},{"name":"University of Gothenburg, Sahlgrenska University Hospital , Institute of Biomedicine, , Bruna Str\u00e5ket 16, SE 413 45, Gothenburg , Sweden"},{"name":"Department of Clinical Chemistry, Region V\u00e4stra G\u00f6taland, Sahlgrenska University Hospital , Bruna Str\u00e5ket 16, SE 413 45, Gothenburg , Sweden"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2024,4,9]]},"reference":[{"issue":"1","key":"2024042906112989800_ref1","doi-asserted-by":"crossref","first-page":"12","DOI":"10.1186\/1297-9716-43-12","article-title":"Rabbit haemorrhagic disease (RHD) and rabbit haemorrhagic 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A relation between the expression of fucolipids of epithelial cells and the ABO, Le and Se phenotype of the donor","volume":"262","author":"Bjork","year":"1987","journal-title":"J Biol Chem"},{"issue":"12","key":"2024042906112989800_ref6","doi-asserted-by":"crossref","first-page":"1721","DOI":"10.1093\/glycob\/cws115","article-title":"Glycosphingolipid composition of epithelial cells isolated along the villus axis of small intestine of a single human individual","volume":"22","author":"Breimer","year":"2012","journal-title":"Glycobiology"},{"issue":"5","key":"2024042906112989800_ref7","doi-asserted-by":"crossref","first-page":"e98201","DOI":"10.1371\/journal.pone.0098201","article-title":"Predominance of norovirus and sapovirus in Nicaragua after implementation of universal rotavirus vaccination","volume":"9","author":"Bucardo","year":"2014","journal-title":"PLoS One"},{"key":"2024042906112989800_ref8","doi-asserted-by":"crossref","first-page":"102272","DOI":"10.1016\/j.cbpa.2023.102272","article-title":"Critical considerations in N-glycoproteomics","volume":"73","author":"Chau","year":"2023","journal-title":"Curr Opin Chem Biol"},{"key":"2024042906112989800_ref9","doi-asserted-by":"crossref","first-page":"e00007","DOI":"10.1128\/genomeA.00007-18","article-title":"Near-complete genome sequences of several new norovirus Genogroup II genotypes","volume":"6","author":"Chhabra","year":"2018","journal-title":"Genome Announc"},{"issue":"10","key":"2024042906112989800_ref10","doi-asserted-by":"crossref","first-page":"1393","DOI":"10.1099\/jgv.0.001318","article-title":"Updated classification of norovirus genogroups and genotypes","volume":"100","author":"Chhabra","year":"2019","journal-title":"J Gen Virol"},{"issue":"9","key":"2024042906112989800_ref11","doi-asserted-by":"crossref","first-page":"5478","DOI":"10.1021\/acs.analchem.8b05639","article-title":"Recognition of bisecting N-Glycans on intact Glycopeptides by two characteristic ions in tandem mass spectra","volume":"91","author":"Dang","year":"2019","journal-title":"Anal Chem"},{"issue":"6","key":"2024042906112989800_ref12","doi-asserted-by":"crossref","first-page":"761","DOI":"10.1016\/0002-9343(75)90461-1","article-title":"Viral gastroenteritis induced by the Hawaii agent. 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