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Previous studies using RIF-RNAi and overexpression lines in Fragaria \u00d7 ananassa and CRISPR knock-out lines in F. vesca have established the role of RIF in controlling ABA biosynthesis and signaling, cell wall remodeling, and secondary metabolism. In this study, we deciphered FaRIF\u2019s transcriptional regulatory network by combining ChIP-seq-based identification of its direct targets with an analysis of FaRIF-RNAi transcriptome data. These analyses revealed FaRIF\u2019s direct role in multiple aspects of strawberry fruit ripening, including the regulation of ripening-related TFs, phytohormone content and signaling, primary and secondary metabolism, and cell wall degradation. Additionally, using the TurboID-based proximity labeling approach, we have identified FaRIF interactors, including proteins involved in mRNA and protein homeostasis, as well as several NAC TFs. Among these, FaNAC021 and FaNAC034 were found to potentially cooperate with FaRIF to enhance the transcription of shared target genes. This integrative analysis, combining transcriptome analysis, in vivo ChIP-seq, and proximity labeling, broadens our understanding of FaRIF-mediated transcriptional networks and interaction partners, providing valuable insights into the molecular regulation of strawberry fruit ripening by this TF.<\/jats:p>","DOI":"10.1093\/hr\/uhaf362","type":"journal-article","created":{"date-parts":[[2026,1,6]],"date-time":"2026-01-06T06:19:05Z","timestamp":1767680345000},"source":"Crossref","is-referenced-by-count":3,"title":["FaRIF as a key regulator of strawberry fruit ripening: deciphering its targets and interaction networks"],"prefix":"10.1093","volume":"13","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-9305-3096","authenticated-orcid":false,"given":"Carmen","family":"Mart\u00edn-Pizarro","sequence":"first","affiliation":[{"name":"Instituto de Hortofruticultura Subtropical y Mediterr\u00e1nea (IHSM) \u201cLa Mayora,\u201d Universidad de M\u00e1laga-Consejo Superior de Investigaciones Cient\u00edficas, Laboratorio de Bioqu\u00edmica y Biotecnolog\u00eda Vegetal, Departamento de Biolog\u00eda Molecular y Bioqu\u00edmica, Facultad de Ciencias, UMA , 29010 M\u00e1laga ,","place":["Spain"]},{"name":"Unidad Asociada de I+D+i IFAPA-CSIC Biotecnolog\u00eda y Mejora en Fresa , M\u00e1laga ,","place":["Spain"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mar\u00eda Florencia","family":"Perotti","sequence":"additional","affiliation":[{"name":"Instituto de Hortofruticultura Subtropical y Mediterr\u00e1nea (IHSM) \u201cLa Mayora,\u201d Universidad de M\u00e1laga-Consejo Superior de Investigaciones Cient\u00edficas, Laboratorio de Bioqu\u00edmica y Biotecnolog\u00eda Vegetal, Departamento de Biolog\u00eda Molecular y Bioqu\u00edmica, Facultad de Ciencias, UMA , 29010 M\u00e1laga ,","place":["Spain"]},{"name":"Unidad Asociada de I+D+i IFAPA-CSIC Biotecnolog\u00eda y Mejora en Fresa , M\u00e1laga ,","place":["Spain"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6769-7349","authenticated-orcid":false,"given":"Jos\u00e9 M","family":"Franco-Zorrilla","sequence":"additional","affiliation":[{"name":"Department of Plant Molecular Genetics, Centro Nacional de Biotecnolog\u00eda, CNB-CSIC , 28049 Madrid ,","place":["Spain"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7348-8842","authenticated-orcid":false,"given":"Rosa","family":"Lozano-Dur\u00e1n","sequence":"additional","affiliation":[{"name":"Department of Plant Biochemistry, Center for Plant Molecular Biology (ZMBP), Eberhard Karls University , 72076 T\u00fcbingen ,","place":["Germany"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3046-1177","authenticated-orcid":false,"given":"Guozheng","family":"Qin","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Plant Diversity and Specialty Crops, Institute of Botany, Chinese Academy of Sciences , Beijing 100093 ,","place":["China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"David","family":"Pos\u00e9","sequence":"additional","affiliation":[{"name":"Instituto de Hortofruticultura Subtropical y Mediterr\u00e1nea (IHSM) \u201cLa Mayora,\u201d Universidad de M\u00e1laga-Consejo Superior de Investigaciones Cient\u00edficas, Laboratorio de Bioqu\u00edmica y Biotecnolog\u00eda Vegetal, Departamento de Biolog\u00eda Molecular y Bioqu\u00edmica, Facultad de Ciencias, UMA , 29010 M\u00e1laga ,","place":["Spain"]},{"name":"Unidad Asociada de I+D+i IFAPA-CSIC Biotecnolog\u00eda y Mejora en Fresa , M\u00e1laga ,","place":["Spain"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2026,1,6]]},"reference":[{"key":"2026050708251243900_ref1","first-page":"1","volume-title":"The Genomes of Rosaceous Berries and Their Wild 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