{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,18]],"date-time":"2026-08-18T11:27:33Z","timestamp":1787052453919,"version":"build-2736575974"},"reference-count":89,"publisher":"Oxford University Press (OUP)","issue":"8","license":[{"start":{"date-parts":[[2026,8,4]],"date-time":"2026-08-04T00:00:00Z","timestamp":1785801600000},"content-version":"vor","delay-in-days":3,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"Key Research and Development Program of Hunan Province, China","award":["2023NK2013 and 2021NK1020"],"award-info":[{"award-number":["2023NK2013 and 2021NK1020"]}]},{"name":"the National Key Research and Development Program","award":["2022YFD1600800"],"award-info":[{"award-number":["2022YFD1600800"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2026,8,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>The induced capacity of plant growth-defense trade-offs under biotic stress is increasingly recognized. While many studies focus primarily on plants\u2019 defense activation stage during insect attacks, limited attention has been given to poststress recovery. Herein, leaves from normal and postherbivory tea plants were collected during the compensation stage, and their microbiomes, metabolomes, and transcriptomes were used to dissect the mechanisms underlying growth-defense trade-offs. The results revealed that apart from altering the microbial community diversity, insect herbivory significantly enriched leaf-associated pathogens, particularly Alternaria spp. Network analysis and in-situ separation jointly revealed the role of Sphingomonas aquatilis in resisting pathogen invasion. Meanwhile, the restructured microbiota exhibited stronger network stability, indicating the enhancement of pathogen resistance among the endophytic community. Moreover, integrated transcriptomic and metabolomic analysis revealed that genes such as GSGT1, GolS4, and \u03b1-gal may regulate synthesis and degradation of growth-promoting and defense metabolites. The downregulated flavonoids were defense compounds against pathogens and the upregulated saccharides were plant growth-promoting compounds, which were verified in subsequent tests. Overall, tea plants compensate for reduced defense through restructuring of the endophytic microbiota, and prioritize growth over defense through metabolic resetting after insect herbivory. This study also revealed new biocontrol and growth-promoting resources for tea plants.<\/jats:p>","DOI":"10.1093\/hr\/uhag338","type":"journal-article","created":{"date-parts":[[2026,8,1]],"date-time":"2026-08-01T12:04:32Z","timestamp":1785585872000},"source":"Crossref","is-referenced-by-count":0,"title":["Multiomics reveals postherbivory tea leaves restructure endophytic microbiota to resist disease and boost saccharide metabolism to promote growth"],"prefix":"10.1093","volume":"13","author":[{"given":"Yishuai","family":"Yang","sequence":"first","affiliation":[{"name":"College of Horticulture, Hunan Agricultural University , Changsha, Hunan 410128 ,","place":["China"]},{"name":"College of Plant Protection, Hunan Agricultural University , Changsha, Hunan 410128 ,","place":["China"]},{"name":"National Research Center of Engineering and Technology for Utilization of Botanical Functional Ingredients & Co-Innovation Center of Education Ministry for Utilization of Botanical Functional Ingredients, Hunan Agricultural University , Changsha 410128 ,","place":["China"]},{"name":"Key Laboratory of Tea Science of Ministry of Education, Yuelushan Laboratory, Hunan Agricultural University , Changsha 410128 ,","place":["China"]},{"name":"State Key Laboratory of Tea Plant Germplasm Innovation and Resource Utilization, Hunan Agricultural University , Changsha 410128 ,","place":["China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zihan","family":"Shi","sequence":"additional","affiliation":[{"name":"College of Horticulture, Hunan Agricultural University , Changsha, Hunan 410128 ,","place":["China"]},{"name":"College of Plant Protection, Hunan Agricultural University , Changsha, Hunan 410128 ,","place":["China"]},{"name":"National Research Center of Engineering and Technology for Utilization of Botanical Functional Ingredients & Co-Innovation Center of Education Ministry for Utilization of Botanical Functional Ingredients, Hunan Agricultural University , Changsha 410128 ,","place":["China"]},{"name":"Key Laboratory of Tea Science of Ministry of Education, Yuelushan Laboratory, Hunan Agricultural University , Changsha 410128 ,","place":["China"]},{"name":"State Key Laboratory of Tea Plant Germplasm Innovation and Resource Utilization, Hunan Agricultural University , Changsha 410128 ,","place":["China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yulian","family":"Deng","sequence":"additional","affiliation":[{"name":"College of Horticulture, Hunan Agricultural University , Changsha, Hunan 410128 ,","place":["China"]},{"name":"National Research Center of Engineering and Technology for Utilization of Botanical Functional Ingredients & Co-Innovation Center of Education Ministry for Utilization of Botanical Functional Ingredients, Hunan Agricultural University , Changsha 410128 ,","place":["China"]},{"name":"Key Laboratory of Tea Science of Ministry of Education, Yuelushan Laboratory, Hunan Agricultural University , Changsha 410128 ,","place":["China"]},{"name":"State Key Laboratory of Tea Plant Germplasm Innovation and Resource Utilization, Hunan Agricultural University , Changsha 410128 ,","place":["China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9107-5179","authenticated-orcid":false,"given":"Chengwen","family":"Shen","sequence":"additional","affiliation":[{"name":"College of Horticulture, Hunan Agricultural University , Changsha, Hunan 410128 ,","place":["China"]},{"name":"National Research Center of Engineering and Technology for Utilization of Botanical Functional Ingredients & Co-Innovation Center of Education Ministry for Utilization of Botanical Functional Ingredients, Hunan Agricultural University , Changsha 410128 ,","place":["China"]},{"name":"Key Laboratory of Tea Science of Ministry of Education, Yuelushan Laboratory, Hunan Agricultural University , Changsha 410128 ,","place":["China"]},{"name":"State Key Laboratory of Tea Plant Germplasm Innovation and Resource Utilization, Hunan Agricultural University , Changsha 410128 ,","place":["China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Linghong","family":"Zhou","sequence":"additional","affiliation":[{"name":"Technology Center, Chenzhou Agricultural Science Research Institute , Chenzhou 423001 ,","place":["China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7584-0632","authenticated-orcid":false,"given":"Ye","family":"Deng","sequence":"additional","affiliation":[{"name":"CAS Key Laboratory for Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences (CAS) , Beijing ,","place":["China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5096-0497","authenticated-orcid":false,"given":"Lin","family":"Tan","sequence":"additional","affiliation":[{"name":"College of Plant Protection, Hunan Agricultural University , Changsha, Hunan 410128 ,","place":["China"]},{"name":"National Research Center of Engineering and Technology for Utilization of Botanical Functional Ingredients & Co-Innovation Center of Education Ministry for Utilization of Botanical Functional Ingredients, Hunan Agricultural University , Changsha 410128 ,","place":["China"]},{"name":"Key Laboratory of Tea Science of Ministry of Education, Yuelushan Laboratory, Hunan Agricultural University , Changsha 410128 ,","place":["China"]},{"name":"State Key Laboratory of Tea Plant Germplasm Innovation and Resource Utilization, Hunan Agricultural University , Changsha 410128 ,","place":["China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0004-8864-3699","authenticated-orcid":false,"given":"Zhonghua","family":"Liu","sequence":"additional","affiliation":[{"name":"College of Horticulture, Hunan Agricultural University , Changsha, Hunan 410128 ,","place":["China"]},{"name":"National Research Center of Engineering and Technology for Utilization of Botanical Functional Ingredients & Co-Innovation Center of Education Ministry for Utilization of Botanical Functional Ingredients, Hunan Agricultural University , Changsha 410128 ,","place":["China"]},{"name":"Key Laboratory of Tea Science of Ministry of Education, Yuelushan Laboratory, Hunan Agricultural University , Changsha 410128 ,","place":["China"]},{"name":"State Key Laboratory of Tea Plant Germplasm Innovation and Resource Utilization, Hunan Agricultural University , Changsha 410128 ,","place":["China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Qiulong","family":"Hu","sequence":"additional","affiliation":[{"name":"College of Horticulture, Hunan Agricultural University , Changsha, Hunan 410128 ,","place":["China"]},{"name":"National Research Center of Engineering and Technology for Utilization of Botanical Functional Ingredients & Co-Innovation Center of Education Ministry for Utilization of Botanical Functional Ingredients, Hunan Agricultural University , Changsha 410128 ,","place":["China"]},{"name":"Key Laboratory of Tea Science of Ministry of Education, Yuelushan Laboratory, Hunan Agricultural University , Changsha 410128 ,","place":["China"]},{"name":"State Key Laboratory of Tea Plant Germplasm Innovation and Resource Utilization, Hunan Agricultural University , Changsha 410128 ,","place":["China"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2026,8,4]]},"reference":[{"key":"2026081806515370900_ref1","doi-asserted-by":"crossref","first-page":"52","DOI":"10.1038\/s41438-020-0275-7","article-title":"(E)-nerolidol is a volatile signal that induces defenses against insects and pathogens in tea plants","volume":"7","author":"Chen","year":"2020","journal-title":"Hortic Res"},{"key":"2026081806515370900_ref2","doi-asserted-by":"crossref","first-page":"6","DOI":"10.1038\/s43705-021-00004-4","article-title":"Insect herbivory facilitates the establishment of an invasive plant pathogen","volume":"1","author":"Gossner","year":"2021","journal-title":"ISME Commun"},{"key":"2026081806515370900_ref3","doi-asserted-by":"crossref","first-page":"3780","DOI":"10.1111\/pce.14960","article-title":"Tea green leafhopper infestations affect tea plant growth by altering the synthesis of brassinolide","volume":"47","author":"Gu","year":"2024","journal-title":"Plant Cell Environ"},{"key":"2026081806515370900_ref4","doi-asserted-by":"crossref","DOI":"10.1016\/j.jenvman.2022.114595","article-title":"Ecological management model for the improvement of soil fertility through the regulation of rare microbial taxa in tea (Camellia sinensis L.) plantation soils","volume":"308","author":"Yang","year":"2022","journal-title":"J Environ Manag"},{"key":"2026081806515370900_ref5","doi-asserted-by":"crossref","first-page":"2175","DOI":"10.1111\/jipb.13737","article-title":"Genomic variation of 363 diverse tea accessions unveils 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analysis","volume":"24","author":"Windram","year":"2012","journal-title":"Plant Cell"},{"key":"2026081806515370900_ref15","article-title":"Sakuranetin protects rice from brown planthopper attack by depleting its beneficial endosymbionts","volume":"120","author":"Liu","year":"2023","journal-title":"Proc Natl Acad Sci USA"},{"key":"2026081806515370900_ref16","doi-asserted-by":"crossref","first-page":"23736","DOI":"10.1021\/acs.jafc.4c05871","article-title":"Citrus fruits produce direct defense responses against Oviposition by Bactrocera minax (Diptera: Tephritidae)","volume":"72","author":"Wei","year":"2024","journal-title":"J Agric Food Chem"},{"key":"2026081806515370900_ref17","doi-asserted-by":"crossref","first-page":"51","DOI":"10.1007\/s11101-017-9510-8","article-title":"Metabolism of the plant hormone jasmonate: a sentinel for tissue damage and master regulator of stress response","volume":"17","author":"Koo","year":"2018","journal-title":"Phytochem Rev"},{"key":"2026081806515370900_ref18","doi-asserted-by":"crossref","first-page":"539","DOI":"10.1146\/annurev-arplant-102820-032704","article-title":"Phyllosphere microbiome","volume":"74","author":"Sohrabi","year":"2023","journal-title":"Annu Rev Plant Biol"},{"key":"2026081806515370900_ref19","doi-asserted-by":"crossref","first-page":"5012","DOI":"10.1038\/s41467-024-49099-y","article-title":"Ferroptosis induction in host rice by endophyte OsiSh-2 is necessary for mutualism and disease resistance in symbiosis","volume":"15","author":"Xiong","year":"2024","journal-title":"Nat Commun"},{"key":"2026081806515370900_ref20","doi-asserted-by":"crossref","DOI":"10.1016\/j.indcrop.2024.119767","article-title":"Biocontrol potential of Bacillus velezensis sec-024a against southern blight of industrial hemp","volume":"222","author":"Wang","year":"2024","journal-title":"Ind Crop Prod"},{"key":"2026081806515370900_ref21","doi-asserted-by":"crossref","first-page":"455","DOI":"10.1111\/nph.71230","article-title":"Xylem endophytes of Salicaceae: potential role in mitigating disease symptoms from Xylella fastidiosa or Brenneria salicis","volume":"251","author":"Pesenti","year":"2026","journal-title":"New Phytol"},{"key":"2026081806515370900_ref22","doi-asserted-by":"crossref","first-page":"319","DOI":"10.1016\/j.tplants.2020.01.007","article-title":"Endophytes: the second layer of plant defense","volume":"25","author":"Dini-Andreote","year":"2020","journal-title":"Trends Plant Sci"},{"key":"2026081806515370900_ref23","doi-asserted-by":"crossref","first-page":"1907","DOI":"10.1038\/s41467-024-46254-3","article-title":"Nonpathogenic Pseudomonas syringae derivatives and its metabolites trigger the plant \"cry for help\" response to assemble disease suppressing and growth promoting rhizomicrobiome","volume":"15","author":"Liu","year":"2024","journal-title":"Nat 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varieties","volume":"12","author":"Ping","year":"2024","journal-title":"Microbiome"},{"key":"2026081806515370900_ref27","doi-asserted-by":"crossref","first-page":"uhae152","DOI":"10.1093\/hr\/uhae152","article-title":"Metabolome profiling and transcriptome analysis unveiling the crucial role of magnesium transport system for magnesium homeostasis in tea plants","volume":"11","author":"Li","year":"2024","journal-title":"Hortic Res"},{"key":"2026081806515370900_ref28","doi-asserted-by":"crossref","first-page":"606","DOI":"10.1126\/science.aaw9285","article-title":"Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome","volume":"366","author":"Carri\u00f3n","year":"2019","journal-title":"Science"},{"key":"2026081806515370900_ref29","doi-asserted-by":"crossref","first-page":"675","DOI":"10.1146\/annurev.arplant.57.032905.105441","article-title":"Sugar sensing and signaling in plants: conserved and novel mechanisms","volume":"57","author":"Rolland","year":"2006","journal-title":"Annu Rev Plant Biol"},{"key":"2026081806515370900_ref30","doi-asserted-by":"crossref","first-page":"53","DOI":"10.1007\/s00344-012-9275-7","article-title":"Carbohydrates modulate the in vitro growth of olive microshoots. I. The analysis of shoot growth and branching patterns","volume":"32","author":"Leva","year":"2013","journal-title":"J Plant Growth Regul"},{"key":"2026081806515370900_ref31","doi-asserted-by":"crossref","first-page":"1299","DOI":"10.1111\/tpj.15390","article-title":"Caffeoylquinic acids: chemistry, biosynthesis, occurrence, analytical challenges, and bioactivity","volume":"107","author":"Alc\u00e1zar","year":"2021","journal-title":"Plant J"},{"key":"2026081806515370900_ref32","article-title":"Site-selective coordination assembly of dynamic metal-phenolic networks","volume":"61","author":"Xu","year":"2022","journal-title":"Angew Chem Int Ed Engl"},{"key":"2026081806515370900_ref33","doi-asserted-by":"crossref","first-page":"2475","DOI":"10.1111\/nph.17746","article-title":"Shoot and root insect herbivory change the plant rhizosphere microbiome and affects cabbage-insect interactions through plant-soil feedback","volume":"232","author":"Friman","year":"2021","journal-title":"New Phytol"},{"key":"2026081806515370900_ref34","doi-asserted-by":"crossref","first-page":"291","DOI":"10.1146\/annurev-phyto-080508-081831","article-title":"Hidden fungi, emergent properties: endophytes and microbiomes","volume":"49","author":"Porras-Alfaro","year":"2011","journal-title":"Annu Rev Phytopathol"},{"key":"2026081806515370900_ref35","doi-asserted-by":"crossref","first-page":"409","DOI":"10.1080\/21655979.2019.1649520","article-title":"A review of plant leaf fungal diseases and its environment speciation","volume":"10","author":"Jain","year":"2019","journal-title":"Bioengineered"},{"key":"2026081806515370900_ref36","doi-asserted-by":"crossref","DOI":"10.1016\/j.pbi.2022.102226","article-title":"Determinants of endophytic and pathogenic lifestyle in root colonizing fungi","volume":"67","author":"Redkar","year":"2022","journal-title":"Curr Opin Plant Biol"},{"key":"2026081806515370900_ref37","doi-asserted-by":"crossref","first-page":"69","DOI":"10.1146\/annurev-phyto-010824-023359","article-title":"Regulation of bacterial growth and behavior by host plant","volume":"62","author":"Nakagami","year":"2024","journal-title":"Annu Rev Phytopathol"},{"key":"2026081806515370900_ref38","doi-asserted-by":"crossref","first-page":"3391","DOI":"10.1093\/jxb\/erz174","article-title":"Jasmonate action in plant defense against insects","volume":"70","author":"Wang","year":"2019","journal-title":"J Exp Bot"},{"key":"2026081806515370900_ref39","doi-asserted-by":"crossref","DOI":"10.1073\/pnas.2502160122","article-title":"Evaluating plant growth\u2013defense trade-offs by modeling the interaction between primary and secondary metabolism","volume":"122","author":"Zrimec","year":"2025","journal-title":"Proc Natl Acad Sci USA"},{"key":"2026081806515370900_ref40","doi-asserted-by":"crossref","first-page":"247","DOI":"10.1038\/s41477-018-0139-4","article-title":"Core microbiomes for sustainable agroecosystems","volume":"4","author":"Toju","year":"2018","journal-title":"Nat Plants"},{"key":"2026081806515370900_ref41","doi-asserted-by":"crossref","DOI":"10.1016\/j.apsoil.2022.104567","article-title":"Network analysis reveals the root endophytic fungi associated with Fusarium root rot invasion","volume":"178","author":"Tan","year":"2022","journal-title":"Appl Soil Ecol"},{"key":"2026081806515370900_ref42","article-title":"Biological characteristic of Alternaria alternata causing leaf spot of tea and fungicide screening","author":"Xie","year":"2026","journal-title":"J Agric Sci Technol"},{"key":"2026081806515370900_ref43","doi-asserted-by":"crossref","DOI":"10.1016\/j.micres.2021.126888","article-title":"Phyllosphere microbiome: diversity and functions","volume":"254","author":"Bashir","year":"2022","journal-title":"Microbiol Res"},{"key":"2026081806515370900_ref44","doi-asserted-by":"crossref","first-page":"841","DOI":"10.1016\/j.tplants.2020.06.003","article-title":"Linking the phyllosphere microbiome to plant health","volume":"25","author":"Liu","year":"2020","journal-title":"Trends Plant Sci"},{"key":"2026081806515370900_ref45","doi-asserted-by":"crossref","first-page":"297","DOI":"10.1111\/jipb.13060","article-title":"Phyllosphere microbiota: community dynamics and its interaction with plant hosts","volume":"63","author":"Gong","year":"2021","journal-title":"J Integr Plant Biol"},{"key":"2026081806515370900_ref46","doi-asserted-by":"crossref","first-page":"10541","DOI":"10.1038\/ncomms10541","article-title":"Microbial diversity drives multifunctionality in terrestrial ecosystems","volume":"7","author":"Delgado-Baquerizo","year":"2016","journal-title":"Nat Commun"},{"key":"2026081806515370900_ref47","doi-asserted-by":"crossref","first-page":"8065","DOI":"10.1038\/s41467-024-52449-5","article-title":"Plant diversity drives positive microbial associations in the rhizosphere enhancing carbon use efficiency in agricultural soils","volume":"15","author":"Domeignoz-Horta","year":"2024","journal-title":"Nat Commun"},{"key":"2026081806515370900_ref48","doi-asserted-by":"crossref","DOI":"10.1111\/ele.14528","article-title":"The impact of microbial interactions on ecosystem function intensifies under stress","volume":"27","author":"Bertolet","year":"2024","journal-title":"Ecol Lett"},{"key":"2026081806515370900_ref49","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1007740","article-title":"Microbiota-mediated disease resistance in plants","volume":"15","author":"Vannier","year":"2019","journal-title":"PLoS Pathog"},{"key":"2026081806515370900_ref50","doi-asserted-by":"crossref","first-page":"2194","DOI":"10.1111\/nph.18816","article-title":"Selection of rhizosphere communities of diverse rotation crops reveals unique core microbiome associated with reduced banana Fusarium wilt disease","volume":"238","author":"Hong","year":"2023","journal-title":"New Phytol"},{"key":"2026081806515370900_ref51","doi-asserted-by":"crossref","first-page":"184","DOI":"10.1186\/s40168-024-01868-z","article-title":"Networks as tools for defining emergent properties of microbiomes and their stability","volume":"12","author":"Kajihara","year":"2024","journal-title":"Microbiome"},{"key":"2026081806515370900_ref52","doi-asserted-by":"crossref","DOI":"10.1007\/s42832-022-0142-6","article-title":"Combined organic-inorganic fertilization builds higher stability of soil and root microbial networks than exclusive mineral or organic fertilization","volume":"5","author":"Yang","year":"2023","journal-title":"Soil Ecol Lett"},{"key":"2026081806515370900_ref53","article-title":"Core species impact plant health by enhancing soil microbial cooperation and network complexity during community coalescence","volume":"188","author":"Qiao","year":"2023","journal-title":"Soil Biol Biochem"},{"key":"2026081806515370900_ref54","doi-asserted-by":"crossref","first-page":"2461","DOI":"10.1111\/pbi.14360","article-title":"From trade-off to synergy: microbial insights into enhancing plant growth and immunity","volume":"22","author":"Ku","year":"2024","journal-title":"Plant Biotechnol J"},{"key":"2026081806515370900_ref55","doi-asserted-by":"crossref","DOI":"10.1126\/sciadv.1500558","article-title":"Trading biodiversity for pest problems","volume":"1","author":"Lundgren","year":"2015","journal-title":"Sci Adv"},{"key":"2026081806515370900_ref56","doi-asserted-by":"crossref","first-page":"eaat6797","DOI":"10.1126\/sciadv.aat6797","article-title":"Convergent evolution of a metabolic switch between aphid and caterpillar resistance in cereals","volume":"4","author":"Li","year":"2018","journal-title":"Sci Adv"},{"key":"2026081806515370900_ref57","doi-asserted-by":"crossref","first-page":"R634","DOI":"10.1016\/j.cub.2022.04.070","article-title":"Growth-defense trade-offs in plants","volume":"32","author":"He","year":"2022","journal-title":"Curr Biol"},{"key":"2026081806515370900_ref58","doi-asserted-by":"crossref","first-page":"12723","DOI":"10.1021\/acs.jafc.2c04218","article-title":"Negative interactions balance growth and defense in plants confronted with herbivores or pathogens","volume":"70","author":"Zhou","year":"2022","journal-title":"J Agric Food Chem"},{"key":"2026081806515370900_ref59","doi-asserted-by":"crossref","first-page":"255","DOI":"10.1126\/science.abe4713","article-title":"Controlled hydroxylations of diterpenoids allow for plant chemical defense without 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