{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,8]],"date-time":"2026-10-08T15:13:57Z","timestamp":1791472437470,"version":"4.3.4"},"reference-count":78,"publisher":"Oxford University Press (OUP)","issue":"4","license":[{"start":{"date-parts":[[2022,1,26]],"date-time":"2022-01-26T00:00:00Z","timestamp":1643155200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100000325","name":"Wellbeing of Women","doi-asserted-by":"publisher","award":["RG1442"],"award-info":[{"award-number":["RG1442"]}],"id":[{"id":"10.13039\/501100000325","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100000361","name":"Diabetes UK","doi-asserted-by":"publisher","award":["15\/0005207"],"award-info":[{"award-number":["15\/0005207"]}],"id":[{"id":"10.13039\/501100000361","id-type":"DOI","asserted-by":"publisher"}]},{"name":"NIHR Local Comprehensive Research Network and Manchester Clinical Research Facility, and the Department of Health Scientist Practitioner Training Scheme"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2022,4,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:sec>\n                    <jats:title>STUDY QUESTION<\/jats:title>\n                    <jats:p>How does the human embryo breach the endometrial epithelium at implantation?<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>SUMMARY ANSWER<\/jats:title>\n                    <jats:p>Embryo attachment to the endometrial epithelium promotes the formation of multinuclear syncytiotrophoblast from trophectoderm, which goes on to breach the epithelial layer.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>WHAT IS KNOWN ALREADY<\/jats:title>\n                    <jats:p>A significant proportion of natural conceptions and assisted reproduction treatments fail due to unsuccessful implantation. The trophectoderm lineage of the embryo attaches to the endometrial epithelium before breaching this barrier to implant into the endometrium. Trophectoderm-derived syncytiotrophoblast has been observed in recent in vitro cultures of peri-implantation embryos, and historical histology has shown invasive syncytiotrophoblast in embryos that have invaded beyond the epithelium, but the cell type mediating invasion of the epithelial layer at implantation is unknown.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>STUDY DESIGN, SIZE, DURATION<\/jats:title>\n                    <jats:p>Fresh and frozen human blastocyst-stage embryos (n = 46) or human trophoblast stem cell (TSC) spheroids were co-cultured with confluent monolayers of the Ishikawa endometrial epithelial cell line to model the epithelial phase of implantation in vitro. Systems biology approaches with published transcriptomic datasets were used to model the epithelial phase of implantation in silico.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>PARTICIPANTS\/MATERIALS, SETTING, METHODS<\/jats:title>\n                    <jats:p>Human embryos surplus to treatment requirements were consented for research. Day 6 blastocysts were co-cultured with Ishikawa cell layers until Day 8, and human TSC spheroids modelling blastocyst trophectoderm were co-cultured with Ishikawa cell layers for 48 h. Embryo and TSC morphology was assessed by immunofluorescence microscopy, and TSC differentiation by real-time quantitative PCR (RT-qPCR) and ELISA. Single-cell human blastocyst transcriptomes, and bulk transcriptomes of TSC and primary human endometrial epithelium were used to model the trophectoderm\u2013epithelium interaction in silico. Hypernetworks, pathway analysis, random forest machine learning and RNA velocity were employed to identify gene networks associated with implantation.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>MAIN RESULTS AND THE ROLE OF CHANCE<\/jats:title>\n                    <jats:p>The majority of embryos co-cultured with Ishikawa cell layers from Day 6 to 8 breached the epithelial layer (37\/46), and syncytiotrophoblast was seen in all of these. Syncytiotrophoblast was observed at the embryo-epithelium interface before breaching, and syncytiotrophoblast mediated all pioneering breaching events observed (7\/7 events). Multiple independent syncytiotrophoblast regions were seen in 26\/46 embryos, suggesting derivation from different regions of trophectoderm. Human TSC spheroids co-cultured with Ishikawa layers also exhibited syncytiotrophoblast formation upon invasion into the epithelium. RT-qPCR comparison of TSC spheroids in isolated culture and co-culture demonstrated epithelium-induced upregulation of syncytiotrophoblast genes CGB (P = 0.03) and SDC1 (P = 0.008), and ELISA revealed the induction of hCG\u03b2 secretion (P = 0.03). Secretory-phase primary endometrial epithelium surface transcriptomes were used to identify trophectoderm surface binding partners to model the embryo-epithelium interface. Hypernetwork analysis established a group of 25 epithelium-interacting trophectoderm genes that were highly connected to the rest of the trophectoderm transcriptome, and epithelium-coupled gene networks in cells of the polar region of the trophectoderm exhibited greater connectivity (P &amp;lt; 0.001) and more organized connections (P &amp;lt; 0.0001) than those in the mural region. Pathway analysis revealed a striking similarity with syncytiotrophoblast differentiation, as 4\/6 most highly activated pathways upon TSC-syncytiotrophoblast differentiation (false discovery rate (FDR &amp;lt; 0.026)) were represented in the most enriched pathways of epithelium-coupled gene networks in both polar and mural trophectoderm (FDR &amp;lt; 0.001). Random forest machine learning also showed that 80% of the endometrial epithelium-interacting trophectoderm genes identified in the hypernetwork could be quantified as classifiers of TSC-syncytiotrophoblast differentiation. This multi-model approach suggests that invasive syncytiotrophoblast formation from both polar and mural trophectoderm is promoted by attachment to the endometrial epithelium to enable embryonic invasion.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>LARGE SCALE DATA<\/jats:title>\n                    <jats:p>No omics datasets were generated in this study, and those used from previously published studies are cited.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>LIMITATIONS, REASONS FOR CAUTION<\/jats:title>\n                    <jats:p>In vitro and in silico models may not recapitulate the dynamic embryo-endometrial interactions that occur in vivo. The influence of other cellular compartments in the endometrium, including decidual stromal cells and leukocytes, was not represented in these models.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>WIDER IMPLICATIONS OF THE FINDINGS<\/jats:title>\n                    <jats:p>Understanding the mechanism of human embryo breaching of the epithelium and the gene networks involved is crucial to improve implantation success rates after assisted reproduction. Moreover, early trophoblast lineages arising at the epithelial phase of implantation form the blueprint for the placenta and thus underpin foetal growth trajectories, pregnancy health and offspring health.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>STUDY FUNDING\/COMPETING INTEREST(S)<\/jats:title>\n                    <jats:p>This work was funded by grants from Wellbeing of Women, Diabetes UK, the NIHR Local Comprehensive Research Network and Manchester Clinical Research Facility, and the Department of Health Scientist Practitioner Training Scheme. None of the authors has any conflict of interest to declare.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1093\/humrep\/deac008","type":"journal-article","created":{"date-parts":[[2022,1,10]],"date-time":"2022-01-10T07:11:25Z","timestamp":1641798685000},"page":"777-792","source":"Crossref","is-referenced-by-count":76,"title":["Trophectoderm differentiation to invasive syncytiotrophoblast is promoted by endometrial epithelial cells during human embryo implantation"],"prefix":"10.1093","volume":"37","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-1476-1666","authenticated-orcid":false,"given":"Peter T","family":"Ruane","sequence":"first","affiliation":[{"name":"Faculty of Biology, Medicine and Health, Division of Developmental Biology and Medicine, Maternal and Fetal Health Research Centre, School of Medical Sciences, Saint Mary\u2019s Hospital, Manchester Academic Health Sciences Centre, University of Manchester , Manchester, UK"},{"name":"Maternal and Fetal Health Research Centre, Saint Mary\u2019s Hospital, Manchester University NHS Foundation Trust, Manchester Academic Health Sciences Centre , Manchester, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Terence","family":"Garner","sequence":"additional","affiliation":[{"name":"Faculty of Biology, Medicine and Health, Division of Developmental Biology and Medicine, Maternal and Fetal Health Research Centre, School of Medical Sciences, Saint Mary\u2019s Hospital, Manchester Academic Health Sciences Centre, University of Manchester , Manchester, UK"},{"name":"Maternal and Fetal Health Research Centre, Saint Mary\u2019s Hospital, Manchester University NHS Foundation Trust, Manchester Academic Health Sciences Centre , Manchester, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lydia","family":"Parsons","sequence":"additional","affiliation":[{"name":"Faculty of Biology, Medicine and Health, Division of Developmental Biology and Medicine, Maternal and Fetal Health Research Centre, School of Medical Sciences, Saint Mary\u2019s Hospital, Manchester Academic Health Sciences Centre, University of Manchester , Manchester, UK"},{"name":"Maternal and Fetal Health Research Centre, Saint Mary\u2019s Hospital, Manchester University NHS Foundation Trust, Manchester Academic Health Sciences Centre , Manchester, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Phoebe A","family":"Babbington","sequence":"additional","affiliation":[{"name":"Department of Reproductive Medicine, Old Saint Mary\u2019s Hospital, Manchester University NHS Foundation Trust, Manchester Academic Health Science Centre , Manchester, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ivan","family":"Wangsaputra","sequence":"additional","affiliation":[{"name":"Faculty of Biology, Medicine and Health, Division of Developmental Biology and Medicine, Maternal and Fetal Health Research Centre, School of Medical Sciences, Saint Mary\u2019s Hospital, Manchester Academic Health Sciences Centre, University of Manchester , Manchester, UK"},{"name":"Maternal and Fetal Health Research Centre, Saint Mary\u2019s Hospital, Manchester University NHS Foundation Trust, Manchester Academic Health Sciences Centre , Manchester, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Susan J","family":"Kimber","sequence":"additional","affiliation":[{"name":"Faculty of Biology Medicine and Health, Division of Cell Matrix Biology and Regenerative Medicine, School of Biological Sciences, University of Manchester , Manchester, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Adam","family":"Stevens","sequence":"additional","affiliation":[{"name":"Faculty of Biology, Medicine and Health, Division of Developmental Biology and Medicine, Maternal and Fetal Health Research Centre, School of Medical Sciences, Saint Mary\u2019s Hospital, Manchester Academic Health Sciences Centre, University of Manchester , Manchester, UK"},{"name":"Maternal and Fetal Health Research Centre, Saint Mary\u2019s Hospital, Manchester University NHS Foundation Trust, Manchester Academic Health Sciences Centre , Manchester, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Melissa","family":"Westwood","sequence":"additional","affiliation":[{"name":"Faculty of Biology, Medicine and Health, Division of Developmental Biology and Medicine, Maternal and Fetal Health Research Centre, School of Medical Sciences, Saint Mary\u2019s Hospital, Manchester Academic Health Sciences Centre, University of Manchester , Manchester, UK"},{"name":"Maternal and Fetal Health Research Centre, Saint Mary\u2019s Hospital, Manchester University NHS Foundation Trust, Manchester Academic Health Sciences Centre , Manchester, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4307-1293","authenticated-orcid":false,"given":"Daniel R","family":"Brison","sequence":"additional","affiliation":[{"name":"Faculty of Biology, Medicine and Health, Division of Developmental Biology and Medicine, Maternal and Fetal Health Research Centre, School of Medical Sciences, Saint Mary\u2019s Hospital, Manchester Academic Health Sciences Centre, University of Manchester , Manchester, UK"},{"name":"Maternal and Fetal Health Research Centre, Saint Mary\u2019s Hospital, Manchester University NHS Foundation Trust, Manchester Academic Health Sciences Centre , Manchester, UK"},{"name":"Department of Reproductive Medicine, Old Saint Mary\u2019s Hospital, Manchester University NHS Foundation Trust, Manchester Academic Health Science Centre , Manchester, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8777-9261","authenticated-orcid":false,"given":"John D","family":"Aplin","sequence":"additional","affiliation":[{"name":"Faculty of Biology, Medicine and Health, Division of Developmental Biology and Medicine, Maternal and Fetal Health Research Centre, School of Medical Sciences, Saint Mary\u2019s Hospital, Manchester Academic Health Sciences Centre, University of Manchester , Manchester, UK"},{"name":"Maternal and Fetal Health Research Centre, Saint Mary\u2019s Hospital, Manchester University NHS Foundation Trust, Manchester Academic Health Sciences Centre , Manchester, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2022,1,26]]},"reference":[{"key":"2022082320111584100_deac008-B1","first-page":"375","article-title":"Expression of adhesion and extracellular matrix genes in human blastocysts upon attachment in a 2D co-culture system","volume":"24","author":"Aberkane","year":"2018","journal-title":"Mol Hum Reprod"},{"key":"2022082320111584100_deac008-B2","doi-asserted-by":"crossref","first-page":"3369","DOI":"10.1093\/humrep\/dei242","article-title":"Epithelial cadherin distribution in abnormal human pre-implantation embryos","volume":"20","author":"Alikani","year":"2005","journal-title":"Hum Reprod"},{"key":"2022082320111584100_deac008-B3","doi-asserted-by":"crossref","first-page":"203","DOI":"10.1210\/me.2011-1196","article-title":"Research resource: interactome of human embryo implantation: identification of gene expression pathways, regulation, and integrated regulatory networks","volume":"26","author":"Altmae","year":"2012","journal-title":"Mol Endocrinol"},{"key":"2022082320111584100_deac008-B4","doi-asserted-by":"crossref","first-page":"323","DOI":"10.1387\/ijdb.082759ja","article-title":"Developmental cell biology of human villous trophoblast: current research problems","volume":"54","author":"Aplin","year":"2010","journal-title":"Int J Dev Biol"},{"key":"2022082320111584100_deac008-B5","doi-asserted-by":"crossref","first-page":"293","DOI":"10.1016\/j.placenta.2008.12.001","article-title":"Adhesion molecules in human trophoblast\u2014a review. I. Villous trophoblast","volume":"30","author":"Aplin","year":"2009","journal-title":"Placenta"},{"key":"2022082320111584100_deac008-B6","doi-asserted-by":"crossref","first-page":"479","DOI":"10.1038\/s41574-020-0372-6","article-title":"Tracking placental development in health and disease","volume":"16","author":"Aplin","year":"2020","journal-title":"Nat Rev Endocrinol"},{"key":"2022082320111584100_deac008-B7","doi-asserted-by":"crossref","first-page":"15","DOI":"10.1242\/jcs.175943","article-title":"Embryo-epithelium interactions during implantation at a glance","volume":"130","author":"Aplin","year":"2017","journal-title":"J Cell Sci"},{"key":"2022082320111584100_deac008-B8","doi-asserted-by":"crossref","first-page":"1270","DOI":"10.1093\/humrep\/der037","article-title":"The Istanbul consensus workshop on embryo assessment: proceedings of an expert meeting","volume":"26","author":"ASiRMaESIGo","year":"2011","journal-title":"Hum Reprod"},{"key":"2022082320111584100_deac008-B9","doi-asserted-by":"crossref","first-page":"3039","DOI":"10.1038\/srep03039","article-title":"Cellular network entropy as the energy potential in Waddington's differentiation landscape","volume":"3","author":"Banerji","year":"2013","journal-title":"Sci Rep"},{"key":"2022082320111584100_deac008-B10","doi-asserted-by":"crossref","first-page":"337","DOI":"10.1530\/jrf.0.1200337","article-title":"Ultrastructure of human blastocyst-endometrial interactions in vitro","volume":"120","author":"Bentin-Ley","year":"2000","journal-title":"J Reprod Fertil"},{"key":"2022082320111584100_deac008-B11","doi-asserted-by":"crossref","first-page":"800","DOI":"10.1093\/humrep\/dev030","article-title":"Effects of ulipristal acetate on human embryo attachment and endometrial cell gene expression in an in vitro co-culture system","volume":"30","author":"Berger","year":"2015","journal-title":"Hum Reprod"},{"key":"2022082320111584100_deac008-B12","doi-asserted-by":"crossref","first-page":"1408","DOI":"10.1038\/s41587-020-0591-3","article-title":"Generalizing RNA velocity to transient cell states through dynamical modelling","volume":"38","author":"Bergen","year":"2020","journal-title":"Nat Biotechnol"},{"key":"2022082320111584100_deac008-B14","doi-asserted-by":"crossref","first-page":"143","DOI":"10.1016\/j.contraception.2016.03.009","article-title":"Effects of low doses of mifepristone on human embryo implantation process in a three-dimensional human endometrial in vitro co-culture system","volume":"94","author":"Boggavarapu","year":"2016","journal-title":"Contraception"},{"key":"2022082320111584100_deac008-B15","doi-asserted-by":"crossref","first-page":"5","DOI":"10.1023\/A:1010933404324","article-title":"Random forests","volume":"45","author":"Breiman","year":"2001","journal-title":"Mach Learn"},{"key":"2022082320111584100_deac008-B16","doi-asserted-by":"crossref","first-page":"41","DOI":"10.1093\/molehr\/6.1.41","article-title":"Mosaic characteristics of human endometrial epithelium in vitro: analysis of secretory markers and cell surface ultrastructure","volume":"6","author":"Campbell","year":"2000","journal-title":"Mol Hum Reprod"},{"key":"2022082320111584100_deac008-B17","doi-asserted-by":"crossref","first-page":"e62236","DOI":"10.7554\/eLife.62236","article-title":"Identification of human glucocorticoid response markers using integrated multi-omic analysis from a randomized crossover trial","volume":"10","author":"Chantzichristos","year":"2021","journal-title":"Elife"},{"key":"2022082320111584100_deac008-B18","doi-asserted-by":"crossref","first-page":"1419","DOI":"10.1210\/clinem\/dgz117","article-title":"Human endometrial transcriptome and progesterone receptor cistrome reveal important pathways and epithelial regulators","volume":"105","author":"Chi","year":"2020","journal-title":"J Clin Endocrinol Metab"},{"key":"2022082320111584100_deac008-B19","doi-asserted-by":"crossref","first-page":"2356","DOI":"10.1101\/gad.227512.113","article-title":"Cell fusion induced by ERVWE1 or measles virus causes cellular senescence","volume":"27","author":"Chuprin","year":"2013","journal-title":"Genes Dev"},{"key":"2022082320111584100_deac008-B20","doi-asserted-by":"crossref","first-page":"14","DOI":"10.1016\/j.rbmo.2015.10.005","article-title":"The endocrine function of human placenta: an overview","volume":"32","author":"Costa","year":"2016","journal-title":"Reprod Biomed Online"},{"key":"2022082320111584100_deac008-B21","doi-asserted-by":"crossref","first-page":"131","DOI":"10.1080\/14647270802302629","article-title":"Elective single embryo transfer: guidelines for practice British fertility society and association of clinical embryologists","volume":"11","author":"Cutting","year":"2008","journal-title":"Hum Fertil (Camb)"},{"key":"2022082320111584100_deac008-B22","doi-asserted-by":"crossref","first-page":"251","DOI":"10.1038\/nature17948","article-title":"Self-organization of the in vitro attached human embryo","volume":"533","author":"Deglincerti","year":"2016","journal-title":"Nature"},{"key":"2022082320111584100_deac008-B23","doi-asserted-by":"crossref","first-page":"52504","DOI":"10.7554\/eLife.52504","article-title":"Derivation of trophoblast stem cells from naive human pluripotent stem cells","volume":"9","author":"Dong","year":"2020","journal-title":"Elife"},{"key":"2022082320111584100_deac008-B24","doi-asserted-by":"crossref","first-page":"438","DOI":"10.1038\/cmi.2014.68","article-title":"The integrative roles of chemokines at the maternal\u2013fetal interface in early pregnancy","volume":"11","author":"Du","year":"2014","journal-title":"Cell Mol Immunol"},{"key":"2022082320111584100_deac008-B25","doi-asserted-by":"crossref","first-page":"275","DOI":"10.1002\/aja.1001670302","article-title":"Implantation in the rhesus monkey: initial penetration of endometrium","volume":"167","author":"Enders","year":"1983","journal-title":"Am J Anat"},{"key":"2022082320111584100_deac008-B26","first-page":"74","article-title":"Embryonic regulation of endometrial epithelial apoptosis during human implantation","volume":"15","author":"Galan","year":"2000","journal-title":"Hum Reprod"},{"key":"2022082320111584100_deac008-B27","doi-asserted-by":"publisher","author":"Garcia-Alonso","year":"2021","DOI":"10.1101\/2021.01.02.425073"},{"key":"2022082320111584100_deac008-B28","doi-asserted-by":"crossref","first-page":"E8468","DOI":"10.1073\/pnas.1706546114","article-title":"Defective decidualization during and after severe preeclampsia reveals a possible maternal contribution to the etiology","volume":"114","author":"Garrido-Gomez","year":"2017","journal-title":"Proc Natl Acad Sci U S A"},{"key":"2022082320111584100_deac008-B29","doi-asserted-by":"crossref","first-page":"i944","DOI":"10.1093\/bioinformatics\/bty570","article-title":"Higher-order molecular organization as a source of biological function","volume":"34","author":"Gaudelet","year":"2018","journal-title":"Bioinformatics"},{"key":"2022082320111584100_deac008-B30","doi-asserted-by":"crossref","first-page":"284","DOI":"10.1093\/humrep\/deu309","article-title":"Insulin-like growth factor 1 increases apical fibronectin in blastocysts to increase blastocyst attachment to endometrial epithelial cells in vitro","volume":"30","author":"Green","year":"2015","journal-title":"Hum Reprod"},{"key":"2022082320111584100_deac008-B31","doi-asserted-by":"crossref","first-page":"27","DOI":"10.1038\/s41576-019-0169-4","article-title":"Mechanisms of early placental development in mouse and humans","volume":"21","author":"Hemberger","year":"2020","journal-title":"Nat Rev Genet"},{"key":"2022082320111584100_deac008-B32","doi-asserted-by":"crossref","first-page":"435","DOI":"10.1002\/aja.1000980306","article-title":"A description of 34 human ova within the first 17 days of development","volume":"98","author":"Hertig","year":"1956","journal-title":"Am J Anat"},{"key":"2022082320111584100_deac008-B33","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1093\/nar\/gkn923","article-title":"Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists","volume":"37","author":"Huang da","year":"2009","journal-title":"Nucleic Acids Res"},{"key":"2022082320111584100_deac008-B34","doi-asserted-by":"crossref","first-page":"44","DOI":"10.1038\/nprot.2008.211","article-title":"Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources","volume":"4","author":"Huang da","year":"2009","journal-title":"Nat Protoc"},{"key":"2022082320111584100_deac008-B35","doi-asserted-by":"crossref","first-page":"327","DOI":"10.1016\/j.placenta.2012.01.020","article-title":"Human placentation from nidation to 5 weeks of gestation. Part I: What do we know about formative placental development following implantation?","volume":"33","author":"James","year":"2012","journal-title":"Placenta"},{"key":"2022082320111584100_deac008-B36","doi-asserted-by":"crossref","first-page":"739","DOI":"10.1093\/humrep\/det433","article-title":"The role of the osteopontin-integrin alphavbeta3 interaction at implantation: functional analysis using three different in vitro models","volume":"29","author":"Kang","year":"2014","journal-title":"Hum Reprod"},{"key":"2022082320111584100_deac008-B37","doi-asserted-by":"crossref","first-page":"1567","DOI":"10.1210\/endo-118-4-1567","article-title":"Purification, characterization, and in vitro differentiation of cytotrophoblasts from human term placentae","volume":"118","author":"Kliman","year":"1986","journal-title":"Endocrinology"},{"key":"2022082320111584100_deac008-B38","doi-asserted-by":"crossref","first-page":"3991","DOI":"10.1016\/j.febslet.2005.06.029","article-title":"Stimulation of GCMa and syncytin via cAMP mediated PKA signaling in human trophoblastic cells under normoxic and hypoxic conditions","volume":"579","author":"Knerr","year":"2005","journal-title":"FEBS Lett"},{"key":"2022082320111584100_deac008-B39","doi-asserted-by":"crossref","first-page":"3479","DOI":"10.1007\/s00018-019-03104-6","article-title":"Human placenta and trophoblast development: key molecular mechanisms and model systems","volume":"76","author":"Knofler","year":"2019","journal-title":"Cell Mol Life Sci"},{"key":"2022082320111584100_deac008-B40","doi-asserted-by":"crossref","first-page":"2636","DOI":"10.1093\/humrep\/der217","article-title":"Recurrent pre-clinical pregnancy loss is unlikely to be a \u2018cause\u2019 of unexplained infertility","volume":"26","author":"Koot","year":"2011","journal-title":"Hum Reprod"},{"key":"2022082320111584100_deac008-B41","doi-asserted-by":"crossref","first-page":"1","DOI":"10.18637\/jss.v036.i11","article-title":"Feature selection with the Boruta package","volume":"36","author":"Kursa","year":"2010","journal-title":"J Stat Softw"},{"key":"2022082320111584100_deac008-B42","doi-asserted-by":"crossref","first-page":"494","DOI":"10.1038\/s41586-018-0414-6","article-title":"RNA velocity of single cells","volume":"560","author":"La Manno","year":"2018","journal-title":"Nature"},{"key":"2022082320111584100_deac008-B43","doi-asserted-by":"crossref","first-page":"3031","DOI":"10.1093\/humrep\/dem297","article-title":"Mifepristone, but not levonorgestrel, inhibits human blastocyst attachment to an in vitro endometrial three-dimensional cell culture model","volume":"22","author":"Lalitkumar","year":"2007","journal-title":"Hum Reprod"},{"key":"2022082320111584100_deac008-B44","doi-asserted-by":"crossref","first-page":"1160","DOI":"10.1016\/j.fertnstert.2013.06.023","article-title":"Polyethylene glycated leukemia inhibitory factor antagonist inhibits human blastocyst implantation and triggers apoptosis by down-regulating embryonic AKT","volume":"100","author":"Lalitkumar","year":"2013","journal-title":"Fertil Steril"},{"key":"2022082320111584100_deac008-B45","doi-asserted-by":"crossref","first-page":"54","DOI":"10.1095\/biolreprod.111.094334","article-title":"Leukemia inhibitory factor regulates differentiation of trophoblastlike BeWo cells through the activation of JAK\/STAT and MAPK3\/1 MAP kinase-signaling pathways","volume":"86","author":"Leduc","year":"2012","journal-title":"Biol Reprod"},{"key":"2022082320111584100_deac008-B46","doi-asserted-by":"crossref","first-page":"243","DOI":"10.1080\/19396368.2016.1183719","article-title":"Nonprofessional phagocytosis in trophectoderm cells of human preimplantation blastocysts","volume":"62","author":"Li","year":"2016","journal-title":"Syst Biol Reprod Med"},{"key":"2022082320111584100_deac008-B47","doi-asserted-by":"crossref","first-page":"368","DOI":"10.1111\/j.1749-6632.1985.tb37541.x","article-title":"In vitro studies of human blastocyst implantation","volume":"442","author":"Lindenberg","year":"1985","journal-title":"Ann N Y Acad Sci"},{"key":"2022082320111584100_deac008-B48","doi-asserted-by":"crossref","first-page":"1150","DOI":"10.1016\/j.celrep.2017.10.019","article-title":"Fine-tuned and cell-cycle-restricted expression of fusogenic protein syncytin-2 maintains functional placental syncytia","volume":"21","author":"Lu","year":"2017","journal-title":"Cell Rep"},{"key":"2022082320111584100_deac008-B49","doi-asserted-by":"crossref","first-page":"e3000187","DOI":"10.1371\/journal.pbio.3000187","article-title":"Single-cell RNA sequencing reveals regulatory mechanism for trophoblast cell-fate divergence in human peri-implantation conceptuses","volume":"17","author":"Lv","year":"2019","journal-title":"PLoS Biol"},{"key":"2022082320111584100_deac008-B50","doi-asserted-by":"crossref","first-page":"1625","DOI":"10.1016\/j.stem.2021.04.027","article-title":"Integrated pseudotime analysis of human pre-implantation embryo single-cell transcriptomes reveals the dynamics of lineage specification","volume":"28","author":"Meistermann","year":"2021","journal-title":"Cell Stem Cell"},{"key":"2022082320111584100_deac008-B51","doi-asserted-by":"crossref","first-page":"590","DOI":"10.1095\/biolreprod64.2.590","article-title":"Human endometrial mucin MUC1 is up-regulated by progesterone and down-regulated in vitro by the human blastocyst","volume":"64","author":"Meseguer","year":"2001","journal-title":"Biol Reprod"},{"key":"2022082320111584100_deac008-B52","doi-asserted-by":"crossref","first-page":"415","DOI":"10.1016\/j.jgg.2018.02.008","article-title":"WocEA: the visualization of functional enrichment results in word clouds","volume":"45","author":"Ning","year":"2018","journal-title":"J Genet Genomics"},{"key":"2022082320111584100_deac008-B53","doi-asserted-by":"crossref","first-page":"50","DOI":"10.1016\/j.stem.2017.11.004","article-title":"Derivation of human trophoblast stem cells","volume":"22","author":"Okae","year":"2018","journal-title":"Cell Stem Cell"},{"key":"2022082320111584100_deac008-B54","doi-asserted-by":"crossref","first-page":"99","DOI":"10.1016\/j.jtbi.2016.06.032","article-title":"Complexity and robustness in hypernetwork models of metabolism","volume":"406","author":"Pearcy","year":"2016","journal-title":"J Theor Biol"},{"key":"2022082320111584100_deac008-B55","doi-asserted-by":"crossref","first-page":"1255","DOI":"10.1016\/j.fertnstert.2004.08.040","article-title":"The antiprogesterone Org 31710 inhibits human blastocyst-endometrial interactions in vitro","volume":"83","author":"Petersen","year":"2005","journal-title":"Fertil Steril"},{"key":"2022082320111584100_deac008-B56","doi-asserted-by":"crossref","first-page":"1012","DOI":"10.1016\/j.cell.2016.03.023","article-title":"Single-cell RNA-Seq reveals lineage and X chromosome dynamics in human preimplantation embryos","volume":"165","author":"Petropoulos","year":"2016","journal-title":"Cell"},{"key":"2022082320111584100_deac008-B57","doi-asserted-by":"crossref","first-page":"519","DOI":"10.1093\/molehr\/gaz035","article-title":"Human blastocyst outgrowths recapitulate primordial germ cell specification events","volume":"25","author":"Popovic","year":"2019","journal-title":"Mol Hum Reprod"},{"key":"2022082320111584100_deac008-B58","doi-asserted-by":"crossref","first-page":"421","DOI":"10.1161\/HYPERTENSIONAHA.114.04481","article-title":"Bioinformatics approach reveals evidence for impaired endometrial maturation before and during early pregnancy in women who developed preeclampsia","volume":"65","author":"Rabaglino","year":"2015","journal-title":"Hypertension"},{"key":"2022082320111584100_deac008-B59","doi-asserted-by":"crossref","first-page":"3295","DOI":"10.1093\/emboj\/19.13.3295","article-title":"Phagocytosis reveals a reversible differentiated state early in the development of the mouse embryo","volume":"19","author":"Rassoulzadegan","year":"2000","journal-title":"EMBO J"},{"key":"2022082320111584100_deac008-B60","doi-asserted-by":"crossref","first-page":"617","DOI":"10.1093\/molehr\/gax043","article-title":"Apposition to endometrial epithelial cells activates mouse blastocysts for implantation","volume":"23","author":"Ruane","year":"2017","journal-title":"Mol Hum Reprod"},{"key":"2022082320111584100_deac008-B61","doi-asserted-by":"crossref","first-page":"hoz033","DOI":"10.1093\/hropen\/hoz033","article-title":"The effects of hyaluronate-containing medium on human embryo attachment to endometrial epithelial cells in vitro","volume":"2020","author":"Ruane","year":"2020","journal-title":"Hum Reprod Open"},{"key":"2022082320111584100_deac008-B62","doi-asserted-by":"crossref","first-page":"700","DOI":"10.1038\/ncb3347","article-title":"Self-organization of the human embryo in the absence of maternal tissues","volume":"18","author":"Shahbazi","year":"2016","journal-title":"Nat Cell Biol"},{"key":"2022082320111584100_deac008-B63","doi-asserted-by":"crossref","first-page":"239","DOI":"10.1038\/nature24675","article-title":"Pluripotent state transitions coordinate morphogenesis in mouse and human embryos","volume":"552","author":"Shahbazi","year":"2017","journal-title":"Nature"},{"key":"2022082320111584100_deac008-B64","doi-asserted-by":"crossref","first-page":"81","DOI":"10.1093\/molehr\/gau087","article-title":"Endometrial apical glycoproteomic analysis reveals roles for cadherin 6, desmoglein-2 and plexin b2 in epithelial integrity","volume":"21","author":"Singh","year":"2015","journal-title":"Mol Hum Reprod"},{"key":"2022082320111584100_deac008-B65","doi-asserted-by":"crossref","first-page":"399","DOI":"10.1007\/BF00309853","article-title":"The ultrastructure of early implantation in the marmoset monkey (Callithrix jacchus)","volume":"175","author":"Smith","year":"1987","journal-title":"Anat Embryol (Berl)"},{"key":"2022082320111584100_deac008-B66","doi-asserted-by":"crossref","first-page":"171","DOI":"10.1186\/s12864-019-5558-8","article-title":"Systems based analysis of human embryos and gene networks involved in cell lineage allocation","volume":"20","author":"Smith","year":"2019","journal-title":"BMC Genomics"},{"key":"2022082320111584100_deac008-B67","doi-asserted-by":"crossref","first-page":"D535","DOI":"10.1093\/nar\/gkj109","article-title":"BioGRID: a general repository for interaction datasets","volume":"34","author":"Stark","year":"2006","journal-title":"Nucleic Acids Res"},{"key":"2022082320111584100_deac008-B68","doi-asserted-by":"crossref","first-page":"241","DOI":"10.1016\/S0012-1606(03)00130-1","article-title":"Mechanisms of implantation in the mouse: differentiation and functional importance of trophoblast giant cell behavior","volume":"258","author":"Sutherland","year":"2003","journal-title":"Dev Biol"},{"key":"2022082320111584100_deac008-B69","doi-asserted-by":"crossref","first-page":"67","DOI":"10.1016\/j.cytogfr.2017.01.003","article-title":"Crosstalk between insulin-like growth factor (IGF) receptor and integrins through direct integrin binding to IGF1","volume":"34","author":"Takada","year":"2017","journal-title":"Cytokine Growth Factor Rev"},{"key":"2022082320111584100_deac008-B70","doi-asserted-by":"crossref","first-page":"15599","DOI":"10.1038\/ncomms15599","article-title":"Single-cell entropy for accurate estimation of differentiation potency from a cell's transcriptome","volume":"8","author":"Teschendorff","year":"2017","journal-title":"Nat Commun"},{"key":"2022082320111584100_deac008-B71","doi-asserted-by":"crossref","first-page":"1661","DOI":"10.3389\/fimmu.2018.01661","article-title":"Integrated systems biology approach identifies novel maternal and placental pathways of preeclampsia","volume":"9","author":"Than","year":"2018","journal-title":"Front Immunol"},{"key":"2022082320111584100_deac008-B72","doi-asserted-by":"crossref","first-page":"163428","DOI":"10.1242\/dev.163428","article-title":"Development of the human placenta","volume":"146","author":"Turco","year":"2019","journal-title":"Development"},{"key":"2022082320111584100_deac008-B73","doi-asserted-by":"crossref","first-page":"e1007698","DOI":"10.1371\/journal.pgen.1007698","article-title":"Genome amplification and cellular senescence are hallmarks of human placenta development","volume":"14","author":"Velicky","year":"2018","journal-title":"PLoS Genet"},{"key":"2022082320111584100_deac008-B74","doi-asserted-by":"crossref","first-page":"22635","DOI":"10.1073\/pnas.1911362116","article-title":"Dynamics of trophoblast differentiation in peri-implantation-stage human embryos","volume":"116","author":"West","year":"2019","journal-title":"Proc Natl Acad Sci U S A"},{"key":"2022082320111584100_deac008-B75","doi-asserted-by":"crossref","first-page":"537","DOI":"10.1038\/s41586-019-1875-y","article-title":"A developmental landscape of 3D-cultured human pre-gastrulation embryos","volume":"577","author":"Xiang","year":"2020","journal-title":"Nature"},{"key":"2022082320111584100_deac008-B76","doi-asserted-by":"crossref","first-page":"E2598","DOI":"10.1073\/pnas.1601630113","article-title":"Comparison of syncytiotrophoblast generated from human embryonic stem cells and from term placentas","volume":"113","author":"Yabe","year":"2016","journal-title":"Proc Natl Acad Sci U S A"},{"key":"2022082320111584100_deac008-B77","doi-asserted-by":"crossref","first-page":"W741","DOI":"10.1093\/nar\/gki475","article-title":"WebGestalt: an integrated system for exploring gene sets in various biological contexts","volume":"33","author":"Zhang","year":"2005","journal-title":"Nucleic Acids Res"},{"key":"2022082320111584100_deac008-B78","doi-asserted-by":"crossref","first-page":"646","DOI":"10.1093\/jmcb\/mjab034","article-title":"Sequential activation of uterine epithelial IGF1R by stromal IGF1 and embryonic IGF2 directs normal uterine preparation for embryo implantation","volume":"13","author":"Zhou","year":"2021","journal-title":"J Mol Cell Biol"},{"key":"2022082320111584100_deac008-B79","doi-asserted-by":"crossref","first-page":"660","DOI":"10.1038\/s41586-019-1500-0","article-title":"Reconstituting the transcriptome and DNA methylome landscapes of human implantation","volume":"572","author":"Zhou","year":"2019","journal-title":"Nature"}],"container-title":["Human Reproduction"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/humrep\/article-pdf\/37\/4\/777\/45505125\/deac008.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/humrep\/article-pdf\/37\/4\/777\/45505125\/deac008.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,8,23]],"date-time":"2022-08-23T16:12:48Z","timestamp":1661271168000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/humrep\/article\/37\/4\/777\/6515587"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,1,26]]},"references-count":78,"journal-issue":{"issue":"4","published-online":{"date-parts":[[2022,1,26]]},"published-print":{"date-parts":[[2022,4,1]]}},"URL":"https:\/\/doi.org\/10.1093\/humrep\/deac008","relation":{"has-review":[{"id-type":"doi","id":"10.3410\/f.741522046.793596557","asserted-by":"object"}]},"ISSN":["0268-1161","1460-2350"],"issn-type":[{"value":"0268-1161","type":"print"},{"value":"1460-2350","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2022,4,1]]},"published":{"date-parts":[[2022,1,26]]}}}