{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,26]],"date-time":"2026-09-26T10:12:07Z","timestamp":1790417527772,"version":"4.1.0"},"reference-count":90,"publisher":"Oxford University Press (OUP)","issue":"Supplement_3","license":[{"start":{"date-parts":[[2019,11,10]],"date-time":"2019-11-10T00:00:00Z","timestamp":1573344000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/open_access\/funder_policies\/chorus\/standard_publication_model"}],"funder":[{"name":"US Department of Defense Global Emerging Infections Surveillance and Response System"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2020,3,28]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>Next-generation sequencing technologies, exponential increases in the availability of virus genomic data, and ongoing advances in phylogenomic methods have made genomic epidemiology an increasingly powerful tool for public health response to a range of mosquito-borne virus outbreaks. In this review, we offer a brief primer on the scope and methods of phylogenomic analyses that can answer key epidemiological questions during mosquito-borne virus public health emergencies. We then focus on case examples of outbreaks, including those caused by dengue, Zika, yellow fever, West Nile, and chikungunya viruses, to demonstrate the utility of genomic epidemiology to support the prevention and control of mosquito-borne virus threats. We extend these case studies with operational perspectives on how to best incorporate genomic epidemiology into structured surveillance and response programs for mosquito-borne virus control. Many tools for genomic epidemiology already exist, but so do technical and nontechnical challenges to advancing their use. Frameworks to support the rapid sharing of multidimensional data and increased cross-sector partnerships, networks, and collaborations can support advancement on all scales, from research and development to implementation by public health agencies.<\/jats:p>","DOI":"10.1093\/infdis\/jiz302","type":"journal-article","created":{"date-parts":[[2019,6,20]],"date-time":"2019-06-20T16:40:17Z","timestamp":1561048817000},"page":"S308-S318","source":"Crossref","is-referenced-by-count":33,"title":["Genomic Epidemiology as a Public Health Tool to Combat Mosquito-Borne Virus Outbreaks"],"prefix":"10.1093","volume":"221","author":[{"given":"S","family":"Pollett","sequence":"first","affiliation":[{"name":"Viral Diseases Branch, Walter Reed Army Institute of Research, Silver Spring, Maryland"},{"name":"Department of Preventive Medicine and Biostatistics, Uniformed Services University, Bethesda, Maryland"},{"name":"Marie Bashir Institute, University of Sydney, Camperdown, New South Wales, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"J R","family":"Fauver","sequence":"first","affiliation":[{"name":"Department of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, Connecticut"},{"name":"Infectious Diseases Division, Department of Medicine, Washington University School of Medicine, St. Louis, Missouri"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Irina","family":"Maljkovic Berry","sequence":"first","affiliation":[{"name":"Viral Diseases Branch, Walter Reed Army Institute of Research, Silver Spring, Maryland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"M","family":"Melendrez","sequence":"first","affiliation":[{"name":"St. Cloud State University, Minnesota"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"A","family":"Morrison","sequence":"first","affiliation":[{"name":"Florida Department of Health, Miami"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"L D","family":"Gillis","sequence":"first","affiliation":[{"name":"Bureau of Public Health Laboratories\u2013Miami, Florida Department of Health, San Juan, Puerto Rico"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"M A","family":"Johansson","sequence":"first","affiliation":[{"name":"Division of Vector-Borne Diseases, Centers for Disease Control and Prevention, San Juan, Puerto Rico"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"R G","family":"Jarman","sequence":"first","affiliation":[{"name":"Viral Diseases Branch, Walter Reed Army Institute of Research, Silver Spring, Maryland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"N D","family":"Grubaugh","sequence":"first","affiliation":[{"name":"Department of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, 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