{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,8]],"date-time":"2026-08-08T18:42:44Z","timestamp":1786214564642,"version":"build-2736575974"},"reference-count":87,"publisher":"Oxford University Press (OUP)","issue":"1","license":[{"start":{"date-parts":[[2026,7,8]],"date-time":"2026-07-08T00:00:00Z","timestamp":1783468800000},"content-version":"vor","delay-in-days":188,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"French Ministry for Higher Education and Research","award":["mopga-postdoc-4-4610922765"],"award-info":[{"award-number":["mopga-postdoc-4-4610922765"]}]},{"DOI":"10.13039\/501100000780","name":"European Union","doi-asserted-by":"publisher","award":["GURDT I2016-1731-0006632"],"award-info":[{"award-number":["GURDT I2016-1731-0006632"]}],"id":[{"id":"10.13039\/501100000780","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100010081","name":"Conseil R\u00e9gional de La R\u00e9union","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100010081","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100007204","name":"CIRAD","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100007204","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2026,1,14]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>Circular replication-associated protein encoding single stranded (CRESS) deoxyribonucleic acid (DNA) viruses have emerged to become one of the largest and most devastating groups of crops-infecting viruses in tropical and subtropical regions of the world. In West Africa, renewed outbreaks of disease-like symptoms in the field have prompted surveys that revealed the circulation of multiple CRESS DNA virus species. Recognizing that plant viral diseases may be best understood at the ecosystem scale, we conducted a survey of plant-associated CRESS DNA virus communities in two localities of Burkina Faso (1068 plant samples). CRESS DNA viruses were detected in 41% and 13% of samples from cultivated and uncultivated plants, respectively. Virus community maps constructed from the 30 uncovered species of geminivirus and associated satellites revealed strong modularity. Whereas few co-infections involving viruses belonging to different host\u2013virus modules were observed, evidence of recombination was nevertheless detected between viruses belonging to different modules. This suggests that co-infections between viruses in different modules does at least occasionally occur: possibly as a consequence of seasonal variations in virus\u2013host community structures with the inter-cropping period in particular promoting such \u201cinter-module\u201d co-infections.<\/jats:p>","DOI":"10.1093\/ismeco\/ycag196","type":"journal-article","created":{"date-parts":[[2026,7,7]],"date-time":"2026-07-07T11:47:18Z","timestamp":1783424838000},"source":"Crossref","is-referenced-by-count":0,"title":["Geminivirus diversity and community structure at the scale of agro-ecological systems in two localities of Burkina Faso"],"prefix":"10.1093","volume":"6","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-4452-5541","authenticated-orcid":false,"given":"Alassane","family":"Ouattara","sequence":"first","affiliation":[{"name":"INERA , Ouagadougou 01 BP 476, 01 ,","place":["Burkina Faso"]},{"name":"CIRAD, UMR PVBMT , St-Pierre, La R\u00e9union F-97410 ,","place":["France"]},{"name":"Universit\u00e9 Joseph Ki-Zerbo , Ouagadougou 03 BP 7021, 03 ,","place":["Burkina Faso"]},{"name":"LMI Patho-Bios, IRD-INERA , Ouagadougou 01 BP 476, 01 ,","place":["Burkina Faso"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"S\u00e9lim Ben","family":"Ch\u00e9hida","sequence":"additional","affiliation":[{"name":"CIRAD, UMR PVBMT , St-Pierre, La R\u00e9union F-97410 ,","place":["France"]},{"name":"INRAE Grand-Est Colmar, UMR 1131A Sant\u00e9 de la Vigne et Qualit\u00e9 du Vin , Colmar 68000 ,","place":["France"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Murielle","family":"Hoareau","sequence":"additional","affiliation":[{"name":"CIRAD, UMR PVBMT , St-Pierre, La R\u00e9union F-97410 ,","place":["France"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sohini","family":"Claverie","sequence":"additional","affiliation":[{"name":"CIRAD, UMR PVBMT , St-Pierre, La R\u00e9union F-97410 ,","place":["France"]},{"name":"Universit\u00e9 de La R\u00e9union, UMR PVBMT , St-Pierre, La R\u00e9union F-97410 ,","place":["France"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Daniel Houa","family":"Otron","sequence":"additional","affiliation":[{"name":"CIRAD, UMR PVBMT , St-Pierre, La R\u00e9union F-97410 ,","place":["France"]},{"name":"Universit\u00e9 F\u00e9lix Houphou\u00ebt-Boigny , Abidjan 01 BP V 34, 01 ,","place":["C\u00f4te d\u2019Ivoire"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Edgar Valentin","family":"Traor\u00e9","sequence":"additional","affiliation":[{"name":"INERA , Ouagadougou 01 BP 476, 01 ,","place":["Burkina Faso"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Oumar","family":"Traor\u00e9","sequence":"additional","affiliation":[{"name":"INERA , Ouagadougou 01 BP 476, 01 ,","place":["Burkina Faso"]},{"name":"Laboratoire National de Bios\u00e9curit\u00e9 , Ouagadougou 06 BP 10798, 06 ,","place":["Burkina Faso"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Nicolas","family":"Barro","sequence":"additional","affiliation":[{"name":"Universit\u00e9 Joseph Ki-Zerbo , Ouagadougou 03 BP 7021, 03 ,","place":["Burkina Faso"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Fid\u00e8le","family":"Tiendr\u00e9b\u00e9ogo","sequence":"additional","affiliation":[{"name":"INERA , Ouagadougou 01 BP 476, 01 ,","place":["Burkina Faso"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Darren P","family":"Martin","sequence":"additional","affiliation":[{"name":"Computational Biology Division, Department of Integrative Biomedical Sciences, Institute of Infectious Diseases and Molecular Medicine, University of Cape Town, Observatory ,","place":["South Africa"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jean-Michel","family":"Lett","sequence":"additional","affiliation":[{"name":"CIRAD, UMR PVBMT , St-Pierre, La 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