{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,14]],"date-time":"2026-09-14T15:08:24Z","timestamp":1789398504365,"version":"build-2803163510"},"reference-count":69,"publisher":"Oxford University Press (OUP)","issue":"1","license":[{"start":{"date-parts":[[2026,8,22]],"date-time":"2026-08-22T00:00:00Z","timestamp":1787356800000},"content-version":"vor","delay-in-days":233,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"European Union\u2019s Horizon Europe research and innovation programme","award":["101117204"],"award-info":[{"award-number":["101117204"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2026,1,14]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>Bacteriophages (phages) are major drivers of microbial evolution and ecology, yet their diversity and functional roles remain poorly characterized in many natural environments, such as in freshwater systems. In boreal and subarctic freshwater habitats, where bacteria are typically slow-growing and nutrient-limited, phages are predicted to have a critical role in host regulation and horizontal gene exchange. However, only a few isolates have been obtained from such environments, leaving the genetic and functional diversity of these phages largely unexplored. Here, we present a collection of 40 bacteriophages isolated from boreal lakes and rivers using a set of diverse freshwater bacterial hosts. Despite using conventional isolation methods, eight of the isolates possess genomes larger than 200 kilobases and are classified as jumbophages. All jumbophages exhibited myovirus morphology and comparatively slow infection dynamics. These jumbophages include the first known representatives infecting members of Janthinobacterium and Herbaspirillum. Comparative genomic and phylogenetic analyses show that nearly all genomes are distinct from previously described phages, indicating substantial novelty. Diverse auxiliary metabolic and anti-defence systems were identified, including putative NAD+ salvage and acyl carrier protein modules, along with predicted Anti-Thoeris and Anti-CBASS elements. The Pseudomonas-infecting jumbophage Ahti encoded homologues of all 21 core genes that define the nucleus-forming family Chimalliviridae. Additionally, Ahti displayed compartmentalization of DNA during infection, establishing it as the first freshwater nucleus-forming phage. These findings expand our understanding of the ecological, genomic, and functional diversity of phages in boreal environments and highlight the role of freshwater ecosystems as significant reservoirs of novel viral lineages.<\/jats:p>","DOI":"10.1093\/ismeco\/ycag239","type":"journal-article","created":{"date-parts":[[2026,8,20]],"date-time":"2026-08-20T11:50:35Z","timestamp":1787226635000},"source":"Crossref","is-referenced-by-count":0,"title":["Boreal and subarctic freshwaters harbour a diversity of jumbophages"],"prefix":"10.1093","volume":"6","author":[{"ORCID":"https:\/\/orcid.org\/0009-0001-9038-4495","authenticated-orcid":false,"given":"Meeri","family":"Niemi","sequence":"first","affiliation":[{"name":"Department of Biological and Environmental Science and Nanoscience Center, University of Jyv\u00e4skyl\u00e4 , PO Box 35 , FI-40014 Jyv\u00e4skyl\u00e4, \u00a0","place":["Finland"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0009-7082-2660","authenticated-orcid":false,"given":"Karyna","family":"Karneyeva","sequence":"additional","affiliation":[{"name":"Department of Biological and Environmental Science and Nanoscience Center, University of Jyv\u00e4skyl\u00e4 , PO Box 35 , FI-40014 Jyv\u00e4skyl\u00e4, \u00a0","place":["Finland"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3510-4398","authenticated-orcid":false,"given":"Lotta-Riina","family":"Sundberg","sequence":"additional","affiliation":[{"name":"Department of Biological and Environmental Science and Nanoscience Center, University of Jyv\u00e4skyl\u00e4 , PO Box 35 , FI-40014 Jyv\u00e4skyl\u00e4, \u00a0","place":["Finland"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3047-8294","authenticated-orcid":false,"given":"Hanna M","family":"Oksanen","sequence":"additional","affiliation":[{"name":"Department of Molecular and Integrative Biosciences, Faculty of Biological and Environmental Sciences, University of Helsinki , PO Box 56, FI-00014 Helsinki ,","place":["Finland"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4172-3128","authenticated-orcid":false,"given":"Elina","family":"Laanto","sequence":"additional","affiliation":[{"name":"Department of Biological and Environmental Science and Nanoscience Center, University of Jyv\u00e4skyl\u00e4 , PO Box 35 , FI-40014 Jyv\u00e4skyl\u00e4, \u00a0","place":["Finland"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2026,8,22]]},"reference":[{"key":"2026091410320798600_ref1","doi-asserted-by":"publisher","first-page":"894","DOI":"10.1007\/s00248-010-9751-1","article-title":"Nutrient constraints on metabolism affect the temperature regulation of aquatic bacterial growth efficiency","volume":"60","author":"Berggren","year":"2010","journal-title":"Microb Ecol"},{"key":"2026091410320798600_ref2","doi-asserted-by":"publisher","first-page":"719","DOI":"10.1007\/978-3-031-15988-6_29","volume-title":"Boreal Forests in the Face of Climate Change: Sustainable Management","author":"Grosbois","year":"2023"},{"key":"2026091410320798600_ref3","doi-asserted-by":"publisher","first-page":"388","DOI":"10.1038\/s43017-020-0067-5","article-title":"Global lake responses to climate change","volume":"1","author":"Woolway RI","year":"2020","journal-title":"Nat Rev Earth Environ"},{"key":"2026091410320798600_ref4","doi-asserted-by":"publisher","first-page":"152420","DOI":"10.1016\/j.scitotenv.2021.152420","article-title":"Ecology and extent of freshwater browning - 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