{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,5]],"date-time":"2026-10-05T18:52:29Z","timestamp":1791226349329,"version":"4.1.0"},"reference-count":72,"publisher":"Oxford University Press (OUP)","issue":"1","license":[{"start":{"date-parts":[[2026,9,7]],"date-time":"2026-09-07T00:00:00Z","timestamp":1788739200000},"content-version":"vor","delay-in-days":249,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100002347","name":"Federal Ministry of Research, Technology and Space","doi-asserted-by":"publisher","award":["031B1068A-D"],"award-info":[{"award-number":["031B1068A-D"]}],"id":[{"id":"10.13039\/501100002347","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100002347","name":"Federal Ministry of Research, Technology and Space","doi-asserted-by":"publisher","award":["16DKWN019"],"award-info":[{"award-number":["16DKWN019"]}],"id":[{"id":"10.13039\/501100002347","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2026,1,14]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>Compared to conventional ploughing, reduced tillage intensity (e.g. cultivator tillage) benefits soil organic matter (SOM) accumulation, which has been attributed to lower disruption of soil aggregates under reduced tillage intensity. While soil microorganisms have been known to contribute to SOM accumulation, the contribution of microbial processes to SOM content has been overlooked, with the underlying mechanisms remaining unclear. We here estimated how cultivator tillage shifts soil bacterial community composition toward slower-growing K-strategists, in contrast to faster-growing r-strategists, by analyzing previously generated data from a long-term field trial in loess chernozem soil. We annotated the 16S rRNA genes from the whole amplicon sequence variant dataset through sequence alignment and identified publicly available genomes phylogenetically related to them with at least 97% sequence identity. Next, we computationally inferred traits such as growth rate, genome size, and the number of carbohydrate catabolism-related genes. These traits were strongly associated with positive responders to cultivator or mouldboard-plough tillage in the bulk soil bacterial communities. Moreover, mouldboard-plough tillage showed a lower ratio of slower- to faster-growing bacterial taxa compared to cultivator tillage in the bulk soil. While this relationship was absent in rhizosphere bacterial communities, these communities showed an overall lower ratio of slower- to faster-growing bacterial taxa than the bulk soil bacterial communities. Moreover, this ratio was negatively correlated with SOM only under mouldboard-plough tillage in bulk soil bacterial communities. Overall, our results indicate that tillage intensity influences the relationship of bacterial K-\/r-strategists with SOM.<\/jats:p>","DOI":"10.1093\/ismeco\/ycag251","type":"journal-article","created":{"date-parts":[[2026,9,7]],"date-time":"2026-09-07T11:22:32Z","timestamp":1788780152000},"source":"Crossref","is-referenced-by-count":0,"title":["Positive effects of reduced tillage intensity on soil organic matter are linked to shifts of\n                    <i>K<\/i>\n                    -\/\n                    <i>r<\/i>\n                    -strategists in soil bacterial community composition"],"prefix":"10.1093","volume":"6","author":[{"ORCID":"https:\/\/orcid.org\/0009-0001-4633-6357","authenticated-orcid":false,"given":"Marie","family":"Raab","sequence":"first","affiliation":[{"name":"Department of Agriculture, Ecotrophology, and Landscape Development, Anhalt University of Applied Sciences , 06406 Bernburg ,","place":["Germany"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jan Helge","family":"Behr","sequence":"additional","affiliation":[{"name":"Plant-Microbe Systems, Leibniz Institute for Horticultural Sciences (IGZ) , 14979 Gro\u00dfbeeren ,","place":["Germany"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2048-8192","authenticated-orcid":false,"given":"Sotirios","family":"Vasileiadis","sequence":"additional","affiliation":[{"name":"Department of Biochemistry and Biotechnology, Laboratory of Plant and Environmental Biotechnology, University of Thessaly , 41500 Larissa ,","place":["Greece"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"G\u00fcnter","family":"Neumann","sequence":"additional","affiliation":[{"name":"Institute of Crop Science (340h), University of Hohenheim , 70599 Stuttgart ,","place":["Germany"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6980-729X","authenticated-orcid":false,"given":"Kornelia","family":"Smalla","sequence":"additional","affiliation":[{"name":"Julius K\u00fchn Institute (JKI)\u2014Federal Research Centre for Cultivated Plants, Institute for Epidemiology and Pathogen Diagnostics , 38104 Braunschweig ,","place":["Germany"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rita","family":"Grosch","sequence":"additional","affiliation":[{"name":"Plant-Microbe Systems, Leibniz Institute for Horticultural Sciences (IGZ) , 14979 Gro\u00dfbeeren ,","place":["Germany"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Joerg","family":"Geistlinger","sequence":"additional","affiliation":[{"name":"Department of Agriculture, Ecotrophology, and Landscape Development, Anhalt University of Applied Sciences , 06406 Bernburg ,","place":["Germany"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Wilfried","family":"Rozhon","sequence":"additional","affiliation":[{"name":"Department of Agriculture, Ecotrophology, and Landscape Development, Anhalt University of Applied Sciences , 06406 Bernburg ,","place":["Germany"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7144-8898","authenticated-orcid":false,"given":"Doreen","family":"Babin","sequence":"additional","affiliation":[{"name":"Julius K\u00fchn Institute (JKI)\u2014Federal Research Centre for Cultivated Plants, Institute for Epidemiology and Pathogen Diagnostics , 38104 Braunschweig ,","place":["Germany"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ioannis D","family":"Kampouris","sequence":"additional","affiliation":[{"name":"Julius K\u00fchn Institute (JKI)\u2014Federal Research Centre for Cultivated Plants, Institute for Epidemiology and Pathogen Diagnostics , 38104 Braunschweig ,","place":["Germany"]},{"name":"Department of Applied Microbial Ecology, Helmholtz Centre for Environmental Research GmbH\u2014UFZ , 04318 Leipzig ,","place":["Germany"]},{"name":"German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig , Deutscher Platz 5e, 04103 Leipzig ,","place":["Germany"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2026,9,7]]},"reference":[{"key":"2026100514071307000_ref1","doi-asserted-by":"publisher","first-page":"199","DOI":"10.1146\/annurev-phyto-080614-120357","article-title":"Soil health paradigms and implications for disease management","volume":"53","author":"Larkin","year":"2015","journal-title":"Annu Rev Phytopathol"},{"key":"2026100514071307000_ref2","doi-asserted-by":"publisher","first-page":"8785","DOI":"10.1038\/s41467-024-53169-6","article-title":"Conservation agriculture improves soil health and sustains crop yields after long-term warming","volume":"15","author":"Teng","year":"2024","journal-title":"Nat Commun"},{"key":"2026100514071307000_ref3","doi-asserted-by":"publisher","first-page":"4930","DOI":"10.1038\/s41467-024-48830-z","article-title":"Sustainable land management enhances ecological and economic multifunctionality under ambient and future climate","volume":"15","author":"Scherzinger","year":"2024","journal-title":"Nat Commun"},{"key":"2026100514071307000_ref4","doi-asserted-by":"publisher","DOI":"10.1016\/j.envint.2019.105078","article-title":"Soil and the intensification of agriculture for global food security","volume":"132","author":"Kopittke","year":"2019","journal-title":"Environ Int"},{"key":"2026100514071307000_ref5","doi-asserted-by":"publisher","DOI":"10.3390\/soilsystems7010017","article-title":"Conservation agriculture and soil organic carbon: principles, processes, practices and policy options","volume":"7","author":"Francaviglia","year":"2023","journal-title":"Soil Syst"},{"key":"2026100514071307000_ref6","volume-title":"Conservation Agriculture","author":"FAO","year":"(10  2025,   )"},{"key":"2026100514071307000_ref7","doi-asserted-by":"publisher","DOI":"10.1016\/j.eja.2025.127612","article-title":"On-farm insights in the South American Gran Chaco reveal the importance of soil organic matter and crop management decisions for boosting maize yields","volume":"168","author":"Madias","year":"2025","journal-title":"Eur J Agron"},{"key":"2026100514071307000_ref8","doi-asserted-by":"publisher","first-page":"735","DOI":"10.1007\/s00374-024-01887-w","article-title":"Can potato cropping be made regenerative? Cover crops and dead organic mulch support soil microbial activity","volume":"61","author":"Henzel","year":"2025","journal-title":"Biol Fertil Soils"},{"key":"2026100514071307000_ref9","doi-asserted-by":"publisher","first-page":"3","DOI":"10.1093\/FEMSEC\/FIAE003","article-title":"Long-term conservation tillage with reduced nitrogen fertilization intensity can improve winter wheat health via positive plant\u2013microorganism feedback in the rhizosphere","volume":"100","author":"Behr","year":"2024","journal-title":"FEMS Microbiol Ecol"},{"key":"2026100514071307000_ref10","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/S0065-2113(08)00801-8","volume-title":"Advances in Agronomy","author":"Johnston","year":"2009"},{"key":"2026100514071307000_ref11","doi-asserted-by":"publisher","first-page":"353","DOI":"10.1007\/978-81-322-2068-8_19","volume-title":"Plant Microbes Symbiosis: Applied Facets","author":"Khare","year":"2015"},{"key":"2026100514071307000_ref12","doi-asserted-by":"publisher","first-page":"6188","DOI":"10.1111\/GCB.16951","article-title":"Drivers of microbially and plant-derived carbon in topsoil and subsoil","volume":"29","author":"Huang","year":"2023","journal-title":"Glob Chang Biol"},{"key":"2026100514071307000_ref13","doi-asserted-by":"publisher","first-page":"579","DOI":"10.1038\/nrmicro.2017.87","article-title":"Embracing the unknown: disentangling the complexities of the soil microbiome","volume":"15","author":"Fierer","year":"2017","journal-title":"Nat Rev Microbiol"},{"key":"2026100514071307000_ref14","doi-asserted-by":"publisher","first-page":"35","DOI":"10.1038\/s41579-019-0265-7","article-title":"Soil microbiomes and climate change","volume":"18","author":"Jansson","year":"2020","journal-title":"Nat Rev Microbiol"},{"key":"2026100514071307000_ref15","doi-asserted-by":"publisher","first-page":"4","DOI":"10.1038\/s43017-022-00366-w","article-title":"Soil structure and microbiome functions in agroecosystems","volume":"4","author":"Hartmann","year":"2022","journal-title":"Nat Rev Earth Environ"},{"key":"2026100514071307000_ref16","doi-asserted-by":"publisher","first-page":"932","DOI":"10.1111\/1365-2664.70015","article-title":"Microbial necromass carbon drives soil organic carbon accumulation during long-term vegetation succession","volume":"62","author":"Zhao","year":"2025","journal-title":"J Appl Ecol"},{"key":"2026100514071307000_ref17","doi-asserted-by":"publisher","first-page":"6","DOI":"10.1038\/s41579-022-00779-w","article-title":"Soil microbiomes and one health","volume":"21","author":"Banerjee","year":"2023","journal-title":"Nat Rev Microbiol"},{"key":"2026100514071307000_ref18","doi-asserted-by":"publisher","first-page":"541","DOI":"10.2136\/SSSAJ2007.0164","article-title":"Tillage effects on soil organic carbon fractions in Mediterranean dryland agroecosystems","volume":"72","author":"\u00c1lvaro-Fuentes","year":"2008","journal-title":"Soil Sci Soc Am J"},{"key":"2026100514071307000_ref19","doi-asserted-by":"publisher","DOI":"10.1111\/EJSS.70037","article-title":"Changes in biological and chemical soil properties in an Austrian long-term tillage experiment","volume":"76","author":"Spiegel","year":"2025","journal-title":"Eur J Soil Sci"},{"key":"2026100514071307000_ref20","doi-asserted-by":"publisher","DOI":"10.1016\/J.CATENA.2019.104428","article-title":"Carbon sequestration and mineralization in soil aggregates under long-term conservation tillage in the North China Plain","volume":"188","author":"Kan","year":"2020","journal-title":"Catena (Amst)"},{"key":"2026100514071307000_ref21","doi-asserted-by":"publisher","first-page":"1431","DOI":"10.3390\/GENES12091431","article-title":"Metagenomic analyses of plant growth-promoting and carbon-cycling genes in maize rhizosphere soils with distinct land-use and management histories","volume":"12","author":"Chukwuneme","year":"2021","journal-title":"Genes (Basel)"},{"key":"2026100514071307000_ref22","doi-asserted-by":"publisher","first-page":"3033","DOI":"10.1002\/LDR.4666","article-title":"Use of metagenomics and metabolomics to quantify changes in rhizosphere soil microbial function in response to mulching regimes","volume":"34","author":"Tian","year":"2023","journal-title":"Land Degrad Dev"},{"key":"2026100514071307000_ref23","doi-asserted-by":"publisher","first-page":"7141","DOI":"10.1007\/S00253-021-11555-W","article-title":"Towards sustainable agriculture: rhizosphere microbiome engineering","volume":"105","author":"Bano","year":"2021","journal-title":"Appl Microbiol Biotechnol"},{"key":"2026100514071307000_ref24","doi-asserted-by":"publisher","first-page":"10068","DOI":"10.1038\/s41598-021-89569-7","article-title":"Insights into the taxonomic and functional characterization of agricultural crop core rhizobiomes and their potential microbial drivers","volume":"11","author":"Castellano-Hinojosa","year":"2021","journal-title":"Sci Rep"},{"key":"2026100514071307000_ref25","doi-asserted-by":"publisher","first-page":"3805","DOI":"10.1007\/S00253-018-8837-4","article-title":"Integrated network analysis reveals the importance of microbial interactions for maize growth","volume":"102","author":"Tao","year":"2018","journal-title":"Appl Microbiol Biotechnol"},{"key":"2026100514071307000_ref26","doi-asserted-by":"publisher","DOI":"10.1016\/j.soilbio.2024.109451","article-title":"Pasture-crop rotations modulate the soil and rhizosphere microbiota and preserve soil structure supporting oat cultivation in the Pampa biome","volume":"195","author":"Cerecetto","year":"2024","journal-title":"Soil Biol Biochem"},{"key":"2026100514071307000_ref27","doi-asserted-by":"publisher","first-page":"3052","DOI":"10.1111\/1462-2920.16495","article-title":"Ecology theory disentangles microbial dichotomies","volume":"25","author":"Couso","year":"2023","journal-title":"Environ Microbiol"},{"key":"2026100514071307000_ref28","doi-asserted-by":"publisher","first-page":"611","DOI":"10.1038\/s41396-022-01354-0","article-title":"Life history strategies among soil bacteria\u2014dichotomy for few, continuum for many","volume":"17","author":"Stone","year":"2023","journal-title":"ISME J"},{"key":"2026100514071307000_ref29","doi-asserted-by":"publisher","first-page":"1354","DOI":"10.1890\/05-1839","article-title":"Toward an ecological classification of soil bacteria","volume":"88","author":"Fierer","year":"2007","journal-title":"Ecology"},{"key":"2026100514071307000_ref30","doi-asserted-by":"publisher","DOI":"10.1016\/j.soilbio.2025.109933","article-title":"Functional molecular diversity of dissolved organic matter explained by predicted genome size of soil microbial communities","volume":"210","author":"Davenport","year":"2025","journal-title":"Soil Biol Biochem"},{"key":"2026100514071307000_ref31","doi-asserted-by":"publisher","first-page":"6881","DOI":"10.1038\/s41467-024-50382-1","article-title":"Global patterns in the growth potential of soil bacterial communities","volume":"15","author":"Osburn","year":"2024","journal-title":"Nat Commun"},{"key":"2026100514071307000_ref32","doi-asserted-by":"publisher","first-page":"377","DOI":"10.1038\/s41467-023-44647-4","article-title":"Microbially mediated mechanisms underlie soil carbon accrual by conservation agriculture under decade-long warming","volume":"15","author":"Tian","year":"2024","journal-title":"Nat Commun"},{"key":"2026100514071307000_ref33","doi-asserted-by":"publisher","first-page":"986","DOI":"10.1038\/s41597-025-05314-z","article-title":"Two decades long-term field trial data on fertilization, tillage, and crop rotation focusing on soil microbes","volume":"12","author":"Raab","year":"2025","journal-title":"Sci Data"},{"key":"2026100514071307000_ref34","doi-asserted-by":"publisher","DOI":"10.1371\/JOURNAL.PONE.0195345","article-title":"Fungal community profiles in agricultural soils of a long-term field trial under different tillage, fertilization and crop rotation conditions analyzed by high-throughput ITS-amplicon sequencing","volume":"13","author":"Sommermann","year":"2018","journal-title":"PloS One"},{"key":"2026100514071307000_ref35","doi-asserted-by":"publisher","DOI":"10.20387\/bonares-w669-gdsd","article-title":"Long-term field trial on tillage and fertilization in crop rotation","author":"Raab","year":"2025","journal-title":"BonaRes Repository"},{"key":"2026100514071307000_ref36","doi-asserted-by":"publisher","first-page":"785","DOI":"10.1093\/NAR\/GKAB776","article-title":"GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy","volume":"50","author":"Parks","year":"2022","journal-title":"Nucleic Acids Res"},{"key":"2026100514071307000_ref37","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1073\/pnas.2016810118","article-title":"Estimating maximal microbial growth rates from cultures, metagenomes, and single cells via codon usage patterns","volume":"118","author":"Weissman","year":"2021","journal-title":"Proc Natl Acad Sci USA"},{"key":"2026100514071307000_ref38","doi-asserted-by":"publisher","DOI":"10.3389\/FSOIL.2022.837508","article-title":"Effect of long-term agricultural management on the soil microbiota influenced by the time of soil sampling","volume":"2","author":"Fernandez-Gnecco","year":"2022","journal-title":"Frontiers in Soil Science"},{"key":"2026100514071307000_ref39","doi-asserted-by":"publisher","first-page":"74815","DOI":"10.3389\/FMICB.2014.00144","article-title":"Effect of the soil type on the microbiome in the rhizosphere of field-grown lettuce","volume":"5","author":"Schreiter","year":"2014","journal-title":"Front Microbiol"},{"key":"2026100514071307000_ref40","volume-title":"R: A Language and Environment for Statistical Computing","author":"R Core Team"},{"key":"2026100514071307000_ref41","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-319-24277-4","volume-title":"ggplot2: Elegant Graphics for Data Analysis","author":"Wickham","year":"2016"},{"key":"2026100514071307000_ref42","volume-title":"\u2018ggplot2\u2019 Based Publication Ready Plots [R package ggpubr version 0.6.0]","author":"Kassambara"},{"key":"2026100514071307000_ref43","doi-asserted-by":"publisher","first-page":"1686","DOI":"10.21105\/joss.01686","article-title":"Welcome to the Tidyverse","volume":"4","author":"Wickham","year":"2019","journal-title":"J Open Source Softw"},{"key":"2026100514071307000_ref44","volume-title":"A Grammar of Data Manipulation [R package dplyr version 1.1.4]","author":"Wickham"},{"key":"2026100514071307000_ref45","volume-title":"reshape2: Flexibly Reshape Data: A Reboot of the Reshape Package version 1.4.4 from CRAN","author":"Wickham"},{"key":"2026100514071307000_ref46","volume-title":"Simple, Consistent Wrappers for Common String Operations [R package stringr version 1.5.1]","author":"Wickham"},{"key":"2026100514071307000_ref47","volume-title":"Package parallel","author":"R Core Team"},{"key":"2026100514071307000_ref48","doi-asserted-by":"publisher","first-page":"67","DOI":"10.18637\/jss.v067.i01","article-title":"Fitting linear mixed-effects models using lme4","volume":"67","author":"Bates","year":"2015","journal-title":"J Stat Softw"},{"key":"2026100514071307000_ref49","doi-asserted-by":"publisher","DOI":"10.1093\/FEMSEC\/FIAB027","article-title":"Distinct rhizomicrobiota assemblages and plant performance in lettuce grown in soils with different agricultural management histories","volume":"97","author":"Babin","year":"2021","journal-title":"FEMS Microbiol Ecol"},{"key":"2026100514071307000_ref50","doi-asserted-by":"publisher","first-page":"69","DOI":"10.1186\/S40793-025-00729-Y","article-title":"Selective recruitment of beneficial microbes in the rhizosphere of maize affected by microbial inoculants, farming practice, and seasonal variations","volume":"20","author":"Kampouris","year":"2025","journal-title":"Environ Microbiome"},{"key":"2026100514071307000_ref51","volume-title":"Vegan: Community Ecology Package","author":"Oksanen"},{"key":"2026100514071307000_ref52","doi-asserted-by":"publisher","first-page":"1396","DOI":"10.1038\/S41396-023-01453-6","article-title":"Growth rate is a dominant factor predicting the rhizosphere effect","volume":"17","author":"L\u00f3pez","year":"2023","journal-title":"ISME J"},{"key":"2026100514071307000_ref53","doi-asserted-by":"publisher","DOI":"10.1371\/JOURNAL.PGEN.1000808","article-title":"The systemic imprint of growth and its uses in ecological (meta)genomics","volume":"6","author":"Vieira-Silva","year":"2010","journal-title":"PLoS Genet"},{"key":"2026100514071307000_ref54","doi-asserted-by":"publisher","first-page":"996","DOI":"10.1038\/nmeth.2604","article-title":"UPARSE: highly accurate OTU sequences from microbial amplicon reads","volume":"10","author":"Edgar","year":"2013","journal-title":"Nat Methods"},{"key":"2026100514071307000_ref55","doi-asserted-by":"publisher","DOI":"10.7717\/PEERJ.1869","article-title":"Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system","volume":"4","author":"Schloss","year":"2016","journal-title":"PeerJ"},{"key":"2026100514071307000_ref56","doi-asserted-by":"publisher","first-page":"276","DOI":"10.1016\/S0168-9525(00)02024-2","article-title":"EMBOSS: the European molecular biology open software suite","volume":"16","author":"Rice","year":"2000","journal-title":"Trends Genet"},{"key":"2026100514071307000_ref57","doi-asserted-by":"publisher","first-page":"1203","DOI":"10.1038\/s41592-023-01940-w","article-title":"CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning","volume":"20","author":"Chklovski","year":"2023","journal-title":"Nat Methods"},{"key":"2026100514071307000_ref58","doi-asserted-by":"publisher","first-page":"2068","DOI":"10.1093\/BIOINFORMATICS\/BTU153","article-title":"Prokka: rapid prokaryotic genome annotation","volume":"30","author":"Seemann","year":"2014","journal-title":"Bioinformatics"},{"key":"2026100514071307000_ref59","doi-asserted-by":"publisher","first-page":"59","DOI":"10.1038\/nmeth.3176","article-title":"Fast and sensitive protein alignment using DIAMOND","volume":"12","author":"Buchfink","year":"2014","journal-title":"Nat Methods"},{"key":"2026100514071307000_ref60","doi-asserted-by":"publisher","first-page":"W115","DOI":"10.1093\/nar\/gkad328","article-title":"dbCAN3: automated carbohydrate-active enzyme and substrate annotation","volume":"51","author":"Zheng","year":"2023","journal-title":"Nucleic Acids Res"},{"key":"2026100514071307000_ref61","doi-asserted-by":"publisher","first-page":"2405","DOI":"10.1007\/S10531-019-01760-5","article-title":"Soil microbiome: a key player for conservation of soil health under changing climate","volume":"28","author":"Dubey","year":"2019","journal-title":"Biodivers Conserv"},{"key":"2026100514071307000_ref62","doi-asserted-by":"publisher","first-page":"749","DOI":"10.1016\/j.tplants.2022.04.009","article-title":"Soil carbon sequestration by root exudates","volume":"27","author":"Panchal","year":"2022","journal-title":"Trends Plant Sci"},{"key":"2026100514071307000_ref63","doi-asserted-by":"publisher","DOI":"10.1016\/j.plantsci.2023.111896","article-title":"Maize (Zea mays L.) root exudation profiles change in quality and quantity during plant development \u2013 a field study","volume":"338","author":"Santangeli","year":"2024","journal-title":"Plant Sci"},{"key":"2026100514071307000_ref64","doi-asserted-by":"publisher","first-page":"885","DOI":"10.1016\/j.tree.2025.07.002","article-title":"Do rhizosphere microbiomes match root functional traits?","volume":"40","author":"Wen","year":"2025","journal-title":"Trends Ecol Evol"},{"key":"2026100514071307000_ref65","doi-asserted-by":"publisher","first-page":"692","DOI":"10.1139\/cjm-2015-0821","article-title":"Compositional analysis: a valid approach to analyze microbiome high-throughput sequencing data","volume":"62","author":"Gloor","year":"2016","journal-title":"Can J Microbiol"},{"key":"2026100514071307000_ref66","doi-asserted-by":"publisher","DOI":"10.1111\/ele.14393","article-title":"Arrive and wait: inactive bacterial taxa contribute to perceived soil microbiome resilience after a multidecadal press disturbance","volume":"27","author":"Barnett","year":"2024","journal-title":"Ecol Lett"},{"key":"2026100514071307000_ref67","doi-asserted-by":"publisher","DOI":"10.1128\/MBIO.02776-19","article-title":"Effects of spatial variability and relic DNA removal on the detection of temporal dynamics in soil microbial communities","volume":"11","author":"Carini","year":"2020","journal-title":"mBio"},{"key":"2026100514071307000_ref68","doi-asserted-by":"publisher","DOI":"10.1016\/j.soilbio.2025.109737","article-title":"Organic cropping systems alter metabolic potential and carbon, nitrogen and phosphorus cycling capacity of soil microbial communities","volume":"203","author":"Krause","year":"2025","journal-title":"Soil Biol Biochem"},{"key":"2026100514071307000_ref69","doi-asserted-by":"publisher","first-page":"16160","DOI":"10.1038\/nmicrobiol.2016.160","article-title":"Exploiting rRNA operon copy number to investigate bacterial reproductive strategies","volume":"1","author":"Roller","year":"2016","journal-title":"Nat Microbiol"},{"key":"2026100514071307000_ref70","doi-asserted-by":"publisher","first-page":"181","DOI":"10.1093\/NAR\/29.1.181","article-title":"rrndb: the ribosomal RNA operon copy number database","volume":"29","author":"Klappenbach","year":"2001","journal-title":"Nucleic Acids Res"},{"key":"2026100514071307000_ref71","doi-asserted-by":"publisher","first-page":"3956","DOI":"10.1002\/ECE3.7290","article-title":"Cell size, genome size, and maximum growth rate are near-independent dimensions of ecological variation across bacteria and archaea","volume":"11","author":"Westoby","year":"2021","journal-title":"Ecol Evol"},{"key":"2026100514071307000_ref72","doi-asserted-by":"publisher","DOI":"10.1016\/J.APSOIL.2024.105854","article-title":"The dominance of K-strategy microbes enhances the potential of soil carbon decomposition under long-term warming","volume":"206","author":"Gao","year":"2025","journal-title":"Appl Soil Ecol"}],"container-title":["ISME Communications"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/ismecommun\/advance-article-pdf\/doi\/10.1093\/ismeco\/ycag251\/70979494\/ycag251.pdf","content-type":"application\/pdf","content-version":"am","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/ismecommun\/article-pdf\/6\/1\/ycag251\/70979494\/ycag251.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/ismecommun\/article-pdf\/6\/1\/ycag251\/70979494\/ycag251.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,10,5]],"date-time":"2026-10-05T18:07:29Z","timestamp":1791223649000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/ismecommun\/article\/doi\/10.1093\/ismeco\/ycag251\/8787089"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,1]]},"references-count":72,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2026,1,14]]}},"URL":"https:\/\/doi.org\/10.1093\/ismeco\/ycag251","relation":{},"ISSN":["2730-6151"],"issn-type":[{"value":"2730-6151","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2026,1]]},"published":{"date-parts":[[2026,1]]},"article-number":"ycag251"}}