{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,4]],"date-time":"2026-07-04T07:36:05Z","timestamp":1783150565999,"version":"3.54.6"},"reference-count":76,"publisher":"Oxford University Press (OUP)","issue":"4","license":[{"start":{"date-parts":[[2025,4,5]],"date-time":"2025-04-05T00:00:00Z","timestamp":1743811200000},"content-version":"vor","delay-in-days":4,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"New Zealand Apples and Pears and Lincoln University"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2025,4,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Aims<\/jats:title>\n                  <jats:p>Endophytic colonization of apple shoots by bacterial endophytes with in vitro antagonism against Neonectria ditissima was evaluated. Their biocontrol activity against N. ditissima was assessed.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Methods and results<\/jats:title>\n                  <jats:p>Spontaneous mutants resistant to 125\u00a0ppm rifampicin produced from three Pseudomonas sp. and three Bacillus sp. strains were used to assess endophytic colonization of detached \u2018Royal Gala\u2019 apple shoots. Re-isolation on rifampicin amended agar followed by enterobacterial repetitive intergenic consensus (ERIC)-polymerase chain reaction (PCR) verified endophytic colonization by three Pseudomonas sp. rifampicin mutants up to 4\u20135\u00a0cm above and below the inoculation point. Colonization ability was not found for the three Bacillus rifampicin mutants. Recovery frequency and total length of detached shoots colonized by N. ditissima was not reduced. In attached shoots, length of shoot tissue colonized by Pseudomonas mutant strains did not differ between treatments at either assessment time. Pseudomonas sp. 1RIF inoculated 14 days before N. ditissima reduced length of shoot colonized by N. ditissima. The other treatments did not reduce length of shoot colonized by N. ditissima indicating no in planta biocontrol activity.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Conclusion<\/jats:title>\n                  <jats:p>Combination of spontaneous rifampicin resistant bacterial mutants and ERIC-PCR reliably tracked bacteria in planta. Lack of in planta biocontrol activity was not due to absence of endophytic colonization.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/jambio\/lxaf086","type":"journal-article","created":{"date-parts":[[2025,4,5]],"date-time":"2025-04-05T02:48:36Z","timestamp":1743821316000},"source":"Crossref","is-referenced-by-count":3,"title":["The use of rifampicin mutants and ERIC-PCR to track plant colonization and <i>in planta<\/i> efficacy of bacterial biocontrol agents against <i>Neonectria ditissima<\/i>"],"prefix":"10.1093","volume":"136","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-4044-8956","authenticated-orcid":false,"given":"Jing","family":"Liu","sequence":"first","affiliation":[{"name":"Department of Pest-management and Conservation, Faculty of Agriculture and Life Sciences, Lincoln University , Lincoln 7647 ,","place":["New Zealand"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0735-7649","authenticated-orcid":false,"given":"Hayley J","family":"Ridgway","sequence":"additional","affiliation":[{"name":"Department of Pest-management and Conservation, Faculty of Agriculture and Life Sciences, Lincoln University , Lincoln 7647 ,","place":["New Zealand"]},{"name":"The New Zealand Institute for Plant and Food Research Ltd ,fi Christchurch 8140 ,","place":["New Zealand"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1879-4537","authenticated-orcid":false,"given":"E Eirian","family":"Jones","sequence":"additional","affiliation":[{"name":"Department of Pest-management and Conservation, Faculty of Agriculture and Life Sciences, Lincoln University , Lincoln 7647 ,","place":["New 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