{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,5]],"date-time":"2026-01-05T18:26:25Z","timestamp":1767637585094,"version":"3.48.0"},"reference-count":56,"publisher":"Oxford University Press (OUP)","issue":"1","license":[{"start":{"date-parts":[[2025,8,16]],"date-time":"2025-08-16T00:00:00Z","timestamp":1755302400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/pages\/standard-publication-reuse-rights"}],"funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["32200525"],"award-info":[{"award-number":["32200525"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["32370486"],"award-info":[{"award-number":["32370486"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Second Tibetan Plateau Scientific Expedition and Research Program","award":["2024QZKK0200"],"award-info":[{"award-number":["2024QZKK0200"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2026,1,5]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>The genus Elaphe Fitzinger, a large species clade within Colubridae, comprises 18 non-venomous snake species. Among them, Elaphe taeniura serves as a representative species due to its wide distribution and strong adaptability. However, genomic studies on this group remain limited. Here, we present a chromosome-level, high-quality reference genome for this species. The genome is assembled by integrating high-accuracy PacBio HiFi long-read sequencing and Hi-C chromatin conformation capture technologies and comprehensively annotated with the aid of transcriptomic data. The genome of E. taeniura spans 1.62 Gb, with a scaffold N50 of 206.4\u00a0Mb and the longest scaffold reaching 344.4\u00a0Mb. The genome exhibits a BUSCO completeness score of 98.2% and contains 22,246 protein-coding genes. Comparative analysis between the assembled genome and three other colubrid species revealed high synteny. In addition, several chromosomal fusion and fission events were observed. This reference genome provides a valuable resource for studying the taxonomy, conservation, and evolutionary history of the widely distributed Elaphe species.<\/jats:p>","DOI":"10.1093\/jhered\/esaf055","type":"journal-article","created":{"date-parts":[[2025,8,15]],"date-time":"2025-08-15T11:52:46Z","timestamp":1755258766000},"page":"141-150","source":"Crossref","is-referenced-by-count":0,"title":["A chromosome-level genome assembly and annotation for the beauty snake\n                    <i>Elaphe taeniura<\/i>"],"prefix":"10.1093","volume":"117","author":[{"ORCID":"https:\/\/orcid.org\/0009-0005-2444-0902","authenticated-orcid":false,"given":"Jiahao","family":"Chen","sequence":"first","affiliation":[{"name":"Institute for Advanced Study, Chengdu University , Chengdu ,","place":["China"]},{"name":"Faculty of Agriculture, Forestry and Food Engineering, Yibin University , Yibin ,","place":["China"]}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8402-6491","authenticated-orcid":false,"given":"Qin","family":"Liu","sequence":"additional","affiliation":[{"name":"Faculty of Agriculture, Forestry and Food Engineering, Yibin University , Yibin ,","place":["China"]}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0009-0009-1461-6328","authenticated-orcid":false,"given":"Songwen","family":"Tan","sequence":"additional","affiliation":[{"name":"Faculty of Agriculture, Forestry and Food Engineering, Yibin University , Yibin ,","place":["China"]},{"name":"School of Ecology and Environment, Xizang University , Lhasa ,","place":["China"]}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5585-292X","authenticated-orcid":false,"given":"Peng","family":"Guo","sequence":"additional","affiliation":[{"name":"Faculty of Agriculture, Forestry and Food Engineering, Yibin University , Yibin ,","place":["China"]}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0646-0887","authenticated-orcid":false,"given":"Lianming","family":"Du","sequence":"additional","affiliation":[{"name":"Institute for Advanced Study, Chengdu University , Chengdu ,","place":["China"]}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2025,8,16]]},"reference":[{"key":"2026010509363979200_ref1","doi-asserted-by":"crossref","first-page":"205","DOI":"10.5358\/hsj.41.205","article-title":"Food habits of the Taiwan beauty snake, Elaphe taeniura friesi, as an introduced species on Okinawajima Island","volume":"41","author":"Asato","year":"2022","journal-title":"Curr Herpetol"},{"key":"2026010509363979200_ref2","doi-asserted-by":"publisher","first-page":"25","DOI":"10.1038\/75556","article-title":"Gene ontology: tool for the unification of biology","volume":"25","author":"Ashburner","year":"2000","journal-title":"Nat Genet"},{"key":"2026010509363979200_ref3","first-page":"403","article-title":"Biology of the blindsnake Typhlops brongersmianus (Typhlopidae) in a semideciduous forest from Central Brazil","volume":"16","author":"Avila","year":"2006","journal-title":"Herpetol J"},{"key":"2026010509363979200_ref4","doi-asserted-by":"publisher","first-page":"49","DOI":"10.1093\/nar\/27.1.49","article-title":"The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999","volume":"27","author":"Bairoch","year":"1999","journal-title":"Nucleic Acids Res"},{"key":"2026010509363979200_ref5","doi-asserted-by":"publisher","first-page":"573","DOI":"10.1093\/nar\/27.2.573","article-title":"Tandem repeats finder: a program to analyze DNA sequences","volume":"27","author":"Benson","year":"1999","journal-title":"Nucleic Acids Res"},{"key":"2026010509363979200_ref6","doi-asserted-by":"publisher","first-page":"846","DOI":"10.3390\/genes10110846","article-title":"The value of reference genomes in the conservation of threatened species","volume":"10","author":"Brandies","year":"2019","journal-title":"Genes"},{"key":"2026010509363979200_ref7","doi-asserted-by":"publisher","first-page":"366","DOI":"10.1038\/s41592-021-01101-x","article-title":"Sensitive protein alignments at tree-of-life scale using DIAMOND","volume":"18","author":"Buchfink","year":"2021","journal-title":"Nat Methods"},{"key":"2026010509363979200_ref8","doi-asserted-by":"publisher","first-page":"5825","DOI":"10.1093\/molbev\/msab293","article-title":"eggNOG-mapper v2: functional annotation, orthology assignments, and domain prediction at the metagenomic scale","volume":"38","author":"Cantalapiedra","year":"2021","journal-title":"Mol Biol Evol"},{"key":"2026010509363979200_ref9","first-page":"1361","article-title":"BlobToolKit\u2013interactive quality assessment of genome assemblies. 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