{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,15]],"date-time":"2026-09-15T01:52:07Z","timestamp":1789437127090,"version":"build-2803163510"},"reference-count":103,"publisher":"Oxford University Press (OUP)","issue":"2","license":[{"start":{"date-parts":[[2025,2,5]],"date-time":"2025-02-05T00:00:00Z","timestamp":1738713600000},"content-version":"vor","delay-in-days":4,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"funder":[{"name":"Hesse's funding program LOEWE"},{"DOI":"10.13039\/501100001664","name":"Leibniz Association","doi-asserted-by":"publisher","award":["PRG1209"],"award-info":[{"award-number":["PRG1209"]}],"id":[{"id":"10.13039\/501100001664","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100003510","name":"Estonian Ministry of Education and Research","doi-asserted-by":"crossref","id":[{"id":"10.13039\/501100003510","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100004281","name":"Polish National Science Centre","doi-asserted-by":"crossref","award":["2016\/23\/N\/NZ8\/03995"],"award-info":[{"award-number":["2016\/23\/N\/NZ8\/03995"]}],"id":[{"id":"10.13039\/501100004281","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100001732","name":"Danish National Research Foundation","doi-asserted-by":"publisher","award":["DNRF173"],"award-info":[{"award-number":["DNRF173"]}],"id":[{"id":"10.13039\/501100001732","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2025,2,3]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>Sex chromosomes differ in their inheritance properties from autosomes and hence may encode complementary information about past demographic events. We compiled and analyzed a range-wide resequencing data set of the red deer (Cervus elaphus), one of the few Eurasian herbivores of the Late Pleistocene megafauna still found throughout much of its historic range. Our analyses of 144 whole genomes reveal striking discrepancies between the population clusters suggested by autosomal and X-chromosomal data. We postulate that the genetic legacy of Late Glacial population structure is better captured and preserved by the X chromosome than by autosomes, for two reasons. First, X chromosomes have a lower Ne and hence lose genetic variation faster during isolation in glacial refugia, causing increased population differentiation. Second, following postglacial recolonization and secondary contact, immigrant males pass on their X chromosomes to female offspring only, which effectively halves the migration rate when gene flow is male mediated. Our study illustrates how a comparison between autosomal and sex chromosomal phylogeographic signals unravels past demographic processes that otherwise would remain hidden.<\/jats:p>","DOI":"10.1093\/molbev\/msaf031","type":"journal-article","created":{"date-parts":[[2025,2,5]],"date-time":"2025-02-05T14:02:05Z","timestamp":1738764125000},"source":"Crossref","is-referenced-by-count":9,"title":["Red Deer Resequencing Reveals the Importance of Sex Chromosomes for Reconstructing Late Quaternary Events"],"prefix":"10.1093","volume":"42","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-2131-9048","authenticated-orcid":false,"given":"Menno J","family":"de Jong","sequence":"first","affiliation":[{"name":"Biodiversity and Climate Research Center, Senckenberg Institute , Frankfurt am Main 60325 ,","place":["Germany"]},{"name":"Institute for Ecology, Evolution and Diversity, Goethe University , Frankfurt am Main ,","place":["Germany"]},{"name":"LOEWE-Centre for Translational Biodiversity Genomics (TBG), Senckenberg Nature Research Society , Frankfurt am Main ,","place":["Germany"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2145-6520","authenticated-orcid":false,"given":"Gabriel","family":"Anaya","sequence":"additional","affiliation":[{"name":"Wildlife Research Unit (UIRCP), University of Cordoba , Cordoba ,","place":["Spain"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4511-3407","authenticated-orcid":false,"given":"Aidin","family":"Niamir","sequence":"additional","affiliation":[{"name":"Biodiversity and Climate Research Center, Senckenberg Institute , Frankfurt am Main 60325 ,","place":["Germany"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0624-835X","authenticated-orcid":false,"given":"Javier","family":"P\u00e9rez-Gonz\u00e1lez","sequence":"additional","affiliation":[{"name":"Biology and Ethology Unit, Faculty of Veterinary, University of Extremadura , Caceres ,","place":["Spain"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5202-7334","authenticated-orcid":false,"given":"Camilla","family":"Broggini","sequence":"additional","affiliation":[{"name":"Wildlife Research Unit (UIRCP), University of Cordoba , Cordoba ,","place":["Spain"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9770-0537","authenticated-orcid":false,"given":"Alberto Membrillo","family":"del Pozo","sequence":"additional","affiliation":[{"name":"Wildlife Research Unit (UIRCP), University of Cordoba , Cordoba ,","place":["Spain"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8802-2105","authenticated-orcid":false,"given":"Marcel","family":"Nebenfuehr","sequence":"additional","affiliation":[{"name":"Biodiversity and Climate Research Center, Senckenberg Institute , Frankfurt am Main 60325 ,","place":["Germany"]},{"name":"Institute for Ecology, Evolution and Diversity, Goethe University , Frankfurt am Main ,","place":["Germany"]},{"name":"LOEWE-Centre for Translational Biodiversity Genomics (TBG), Senckenberg Nature Research Society , Frankfurt am Main ,","place":["Germany"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Eva","family":"de la Pe\u00f1a","sequence":"additional","affiliation":[{"name":"Wildlife Research Unit (UIRCP), University of Cordoba , Cordoba ,","place":["Spain"]},{"name":"Instituto de Investigaci\u00f3n en Recursos Cineg\u00e9ticos, IREC (CSIC, UCLM, JCCM) , Ciudad Real ,","place":["Spain"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jordi","family":"Ruiz-Olmo","sequence":"additional","affiliation":[{"name":"Wildlife Research Unit (UIRCP), University of Cordoba , Cordoba ,","place":["Spain"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jose Manuel","family":"Seoane","sequence":"additional","affiliation":[{"name":"Wildlife Research Unit (UIRCP), University of Cordoba , Cordoba ,","place":["Spain"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Giovanni","family":"Vedel","sequence":"additional","affiliation":[{"name":"Wildlife Research Unit (UIRCP), University of Cordoba , Cordoba ,","place":["Spain"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Aurelie","family":"Barboiron","sequence":"additional","affiliation":[{"name":"Office Fran\u00e7ais de la Biodiversit\u00e9, Direction de la Recherche et de l'Appui Scientifique, Service Conservation et Gestion Durable des Esp\u00e8ces Exploit\u00e9s ,","place":["France"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2667-5930","authenticated-orcid":false,"given":"Lud\u011bk","family":"Barto\u0161","sequence":"additional","affiliation":[{"name":"Department of Ethology, Institute of Animal Science, Czech University of Life Sciences , 10400 Prague 10-Uhrineves ,","place":["Czechia"]},{"name":"Department of Game Management and Wildlife Biology, Faculty of Forestry and Wood Sciences, University of Life Sciences , 16500 Prague 6-Suchdol ,","place":["Czechia"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0714-5301","authenticated-orcid":false,"given":"Elena","family":"Buzan","sequence":"additional","affiliation":[{"name":"Department of Biodiversity, Faculty of Mathematics, Natural Sciences and Information Technologies, University of Primorska , Koper 6000 ,","place":["Slovenia"]},{"name":"Faculty of Environmental Protection , Velenje 3320 ,","place":["Slovenia"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2829-4667","authenticated-orcid":false,"given":"Ruth F","family":"Carden","sequence":"additional","affiliation":[{"name":"School of Archaeology, University College Dublin , Dublin 4 ,","place":["Ireland"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Giorgi","family":"Darchiashvili","sequence":"additional","affiliation":[{"name":"Tbilisi Zoo , Tbilisi 0171 ,","place":["Georgia"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5481-7142","authenticated-orcid":false,"given":"Alain C","family":"Frantz","sequence":"additional","affiliation":[{"name":"Scientific Research Center, Musee National d'Histoire Naturelle , Luxembourg L-2160 ,","place":["Luxembourg"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0434-6562","authenticated-orcid":false,"given":"Dragan","family":"Ga\u010di\u0107","sequence":"additional","affiliation":[{"name":"Faculty of Forestry, University of Belgrade , Belgrade 11000 ,","place":["Serbia"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Adrien","family":"G\u00e9rard","sequence":"additional","affiliation":[{"name":"Domaine National de Chambord , Chambord ,","place":["France"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Araceli","family":"Gort-Esteve","sequence":"additional","affiliation":[{"name":"Department of Animal and Food Science, Universitat Aut\u00f2noma de Barcelona , Barcelona 08193 ,","place":["Spain"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Etienne","family":"Guillaumat","sequence":"additional","affiliation":[{"name":"Domaine National de Chambord , Chambord ,","place":["France"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Anja","family":"Hantschmann","sequence":"additional","affiliation":[{"name":"Tierpark Berlin-Friedrichsfelde GmbH , Berlin 10319 ,","place":["Germany"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8321-6776","authenticated-orcid":false,"given":"Mahmoud-Reza","family":"Hemami","sequence":"additional","affiliation":[{"name":"Department of Natural Resources, Isfahan University of Technology , Isfahan ,","place":["Iran"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5840-779X","authenticated-orcid":false,"given":"Jacob","family":"H\u00f6glund","sequence":"additional","affiliation":[{"name":"Dept. of Ecology and Genetics, Uppsala University , Uppsala SE-75236 ,","place":["Sweden"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8042-6022","authenticated-orcid":false,"given":"Joost F","family":"de Jong","sequence":"additional","affiliation":[{"name":"Wildlife Ecology & Conservation Group, Wageningen University , Wageningen PB 6708 ,","place":["The Netherlands"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Nikoleta","family":"Karaiskou","sequence":"additional","affiliation":[{"name":"Department of Genetics, Developmental and Molecular Biology, School of Biology, Aristotle University of Thessaloniki , Thessaloniki 54124 ,","place":["Greece"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Niko","family":"Kerdikoshvili","sequence":"additional","affiliation":[{"name":"Institute of Ecology, Ilia State University , Tbilisi 0162 ,","place":["Georgia"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Christian","family":"Kern","sequence":"additional","affiliation":[{"name":"Tierpark Berlin-Friedrichsfelde GmbH , Berlin 10319 ,","place":["Germany"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8584-9825","authenticated-orcid":false,"given":"Dean","family":"Konjevic","sequence":"additional","affiliation":[{"name":"The Faculty of Veterinary Medicine, University of Zagreb , Zagreb ,","place":["Croatia"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Petr","family":"Koubek","sequence":"additional","affiliation":[{"name":"Institute of Vertebrate Biology, Czech Academy of Sciences , Brno 603 00 ,","place":["Czech Republic"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0067-6196","authenticated-orcid":false,"given":"Jarmila","family":"Krojerov\u00e1-Proke\u0161ov\u00e1","sequence":"additional","affiliation":[{"name":"Institute of Vertebrate Biology, Czech Academy of Sciences , Brno 603 00 ,","place":["Czech Republic"]},{"name":"Department of Zoology, Fisheries, Hydrobiology and Apiculture, Faculty of AgriSciences, Mendel University in Brno , Brno 613 00 ,","place":["Czech Republic"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2677-7833","authenticated-orcid":false,"given":"Allan D","family":"McDevitt","sequence":"additional","affiliation":[{"name":"Marine and Freshwater Research Centre, Department of Natural Resources and the Environment, Atlantic Technological University , Galway ,","place":["Ireland"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3142-7720","authenticated-orcid":false,"given":"Stefan","family":"Merker","sequence":"additional","affiliation":[{"name":"Department of Zoology, State Museum of Natural History Stuttgart , Stuttgart 70191 ,","place":["Germany"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Maryline","family":"Pellerin","sequence":"additional","affiliation":[{"name":"Office Fran\u00e7ais de la Biodiversit\u00e9, Direction de la Recherche et de l'Appui Scientifique, Service Conservation et Gestion Durable des Esp\u00e8ces Exploit\u00e9s ,","place":["France"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1547-7245","authenticated-orcid":false,"given":"Markus","family":"Pfenninger","sequence":"additional","affiliation":[{"name":"Biodiversity and Climate Research Center, Senckenberg Institute , Frankfurt am Main 60325 ,","place":["Germany"]},{"name":"LOEWE-Centre for Translational Biodiversity Genomics (TBG), Senckenberg Nature Research Society , Frankfurt am Main ,","place":["Germany"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5991-6070","authenticated-orcid":false,"given":"Knut H","family":"R\u00f8ed","sequence":"additional","affiliation":[{"name":"Department of Preclinical Sciences and Pathology, Norwegian University of Life Sciences , P.O. Box 5003, \u00c5s 1432 ,","place":["Norway"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Christine","family":"Saint-Andrieux","sequence":"additional","affiliation":[{"name":"Office Fran\u00e7ais de la Biodiversit\u00e9, Direction de la Recherche et de l'Appui Scientifique, Service Anthropisation et fonctionnement des \u00e9cosyst\u00e8mes terrestres ,","place":["France"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5842-6114","authenticated-orcid":false,"given":"Fatih","family":"Sarigol","sequence":"additional","affiliation":[{"name":"Max Perutz Labs, Vienna BioCentre , Vienna 1030 ,","place":["Austria"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-3226-0267","authenticated-orcid":false,"given":"Maciej","family":"Sykut","sequence":"additional","affiliation":[{"name":"Mammal Research Institute, Polish Academy of Sciences , Bia\u0142owie\u017ca 17-230 ,","place":["Poland"]},{"name":"Center for Ecological Dynamics in a Novel Biosphere (ECONOVO), Department of Biology, Aarhus University , Aarhus C 8000 ,","place":["Denmark"]},{"name":"Department of Archaeology and Heritage Studies, Aarhus University , H\u00f8jbjerg DK-8270 ,","place":["Denmark"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0469-011X","authenticated-orcid":false,"given":"Alexandros","family":"Triantafyllidis","sequence":"additional","affiliation":[{"name":"Department of Genetics, Developmental and Molecular Biology, School of Biology, Aristotle University of Thessaloniki , Thessaloniki 54124 ,","place":["Greece"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0075-1504","authenticated-orcid":false,"given":"Josephine","family":"Pemberton","sequence":"additional","affiliation":[{"name":"Institute of Ecology and Evolution, School of Biological Sciences, University of Edinburgh, Edinburgh EH93FL ,","place":["UK"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-3222-571X","authenticated-orcid":false,"given":"Urmas","family":"Saarma","sequence":"additional","affiliation":[{"name":"Department of Zoology, Institute of Ecology and Earth Sciences, University of Tartu , Tartu 50409 ,","place":["Estonia"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5504-6549","authenticated-orcid":false,"given":"Laura","family":"Iacolina","sequence":"additional","affiliation":[{"name":"Department of Biodiversity, Faculty of Mathematics, Natural Sciences and Information Technologies, University of Primorska , Koper 6000 ,","place":["Slovenia"]},{"name":"Department of Veterinary Medicine, University of Sassari , Sassari 07100 ,","place":["Italy"]},{"name":"Department of Chemistry and Bioscience, Aalborg University , Aalborg 9220 ,","place":["Denmark"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7746-4116","authenticated-orcid":false,"given":"Magdalena","family":"Niedzia\u0142kowska","sequence":"additional","affiliation":[{"name":"Mammal Research Institute, Polish Academy of Sciences , Bia\u0142owie\u017ca 17-230 ,","place":["Poland"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0133-6265","authenticated-orcid":false,"given":"Frank E","family":"Zachos","sequence":"additional","affiliation":[{"name":"Department of Mammal Collection, Natural History Museum Vienna , Vienna ,","place":["Austria"]},{"name":"Department of Genetics, University of the Free State , Bloemfontein ,","place":["South Africa"]},{"name":"Department of Evolutionary Biology, University of Vienna , Vienna ,","place":["Austria"]},{"name":"Research Institute for the Environment and Livelihoods, Charles Darwin University , Casuarina, NT ,","place":["Australia"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0368-7173","authenticated-orcid":false,"given":"Juan","family":"Carranza","sequence":"additional","affiliation":[{"name":"Wildlife Research Unit (UIRCP), University of Cordoba , Cordoba ,","place":["Spain"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9394-1904","authenticated-orcid":false,"given":"Axel","family":"Janke","sequence":"additional","affiliation":[{"name":"Biodiversity and Climate Research Center, Senckenberg Institute , Frankfurt am Main 60325 ,","place":["Germany"]},{"name":"Institute for Ecology, Evolution and Diversity, Goethe University , Frankfurt am Main ,","place":["Germany"]},{"name":"LOEWE-Centre for Translational Biodiversity Genomics (TBG), Senckenberg Nature Research Society , Frankfurt am Main ,","place":["Germany"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2025,2,5]]},"reference":[{"issue":"20","key":"2025042810261461500_msaf031-B1","doi-asserted-by":"publisher","first-page":"5663","DOI":"10.1111\/mec.14273","article-title":"Hybrid zone formation and contrasting outcomes of secondary contact over transects in common toads","volume":"26","author":"Arntzen","year":"2017","journal-title":"Mol Ecol."},{"key":"2025042810261461500_msaf031-B2","first-page":"39","volume-title":"The archaeology of Europe","author":"Bailey","year":"2020"},{"issue":"3","key":"2025042810261461500_msaf031-B3","doi-asserted-by":"publisher","first-page":"341","DOI":"10.1038\/hdy.1979.87","article-title":"The dynamics of hybrid zones","volume":"43","author":"Barton","year":"1979","journal-title":"Heredity (Edinb)."},{"issue":"1","key":"2025042810261461500_msaf031-B4","doi-asserted-by":"publisher","first-page":"113","DOI":"10.1146\/annurev.es.16.110185.000553","article-title":"Analysis of hybrid zones","volume":"16","author":"Barton","year":"1985","journal-title":"Annu Rev Ecol Syst."},{"key":"2025042810261461500_msaf031-B5","doi-asserted-by":"publisher","first-page":"e5325","DOI":"10.7717\/peerj.5325","article-title":"Can secondary contact following range expansion be distinguished from barriers to gene flow?","volume":"6","author":"Bertl","year":"2018","journal-title":"PeerJ"},{"issue":"3","key":"2025042810261461500_msaf031-B6","doi-asserted-by":"publisher","first-page":"464","DOI":"10.1111\/j.1365-2699.2007.01861.x","article-title":"Species persistence in northerly glacial refugia of Europe: a matter of chance or biogeographical traits?","volume":"35","author":"Bhagwat","year":"2008","journal-title":"J Biogeogr."},{"key":"2025042810261461500_msaf031-B7","author":"Bivand","year":"2021"},{"key":"2025042810261461500_msaf031-B8","doi-asserted-by":"publisher","first-page":"19","DOI":"10.1016\/1040-6182(94)00057-C","article-title":"A review of the history of the Baltic Sea, 13.0-8.0 ka BP","volume":"27","author":"Bj\u00f6rck","year":"1995","journal-title":"Quat Int."},{"issue":"6","key":"2025042810261461500_msaf031-B9","doi-asserted-by":"publisher","first-page":"1671","DOI":"10.1093\/jmammal\/gyw133","article-title":"Red deer (Cervus elaphus) fertility and survival of young in a low-density population subject to predation and hunting","volume":"97","author":"Borowik","year":"2016","journal-title":"J Mammal."},{"issue":"9","key":"2025042810261461500_msaf031-B10","doi-asserted-by":"publisher","first-page":"e0163191","DOI":"10.1371\/journal.pone.0163191","article-title":"Purifying selection, density blocking and unnoticed mitochondrial DNA diversity in the red deer, Cervus elaphus","volume":"11","author":"Borowski","year":"2016","journal-title":"PLoS One"},{"issue":"1","key":"2025042810261461500_msaf031-B11","doi-asserted-by":"publisher","first-page":"58","DOI":"10.1016\/S1055-7903(02)00268-3","article-title":"Phylogenetic dating with confidence intervals using mean path lengths","volume":"24","author":"Britton","year":"2002","journal-title":"Mol Phylogenet Evol"},{"key":"2025042810261461500_msaf031-B12","doi-asserted-by":"publisher","first-page":"74","DOI":"10.1016\/j.quascirev.2012.02.012","article-title":"Phylogeographic, ancient DNA, fossil and morphometric analyses reveal ancient and modern introductions of a large mammal: the complex case of red deer (Cervus elaphus) in Ireland","volume":"42","author":"Carden","year":"2012","journal-title":"Quat Sci Rev."},{"issue":"18","key":"2025042810261461500_msaf031-B13","doi-asserted-by":"publisher","first-page":"e17508","DOI":"10.1111\/mec.17508","article-title":"Genome-wide SNP assessment of contemporary European red deer genetic structure highlights the distinction of peripheral populations and the main admixture zones in Europe","volume":"33","author":"Carranza","year":"2024","journal-title":"Mol Ecol"},{"issue":"4","key":"2025042810261461500_msaf031-B14","doi-asserted-by":"publisher","first-page":"905","DOI":"10.1002\/ece3.1836","article-title":"Iberian red deer: paraphyletic nature at mtDNA but nuclear markers support its genetic identity","volume":"6","author":"Carranza","year":"2016","journal-title":"Ecol Evol"},{"issue":"2","key":"2025042810261461500_msaf031-B15","doi-asserted-by":"publisher","first-page":"343","DOI":"10.1111\/jbi.13509","article-title":"Reticulate evolutionary history of a Western Palaearctic Bat Complex explained by multiple mtDNA introgressions in secondary contacts","volume":"46","author":"\u00c7oraman","year":"2019","journal-title":"J Biogeogr."},{"issue":"15","key":"2025042810261461500_msaf031-B16","doi-asserted-by":"publisher","first-page":"2156","DOI":"10.1093\/bioinformatics\/btr330","article-title":"The variant call format and VCFtools","volume":"27","author":"Danecek","year":"2011","journal-title":"Bioinformatics"},{"key":"2025042810261461500_msaf031-B17","doi-asserted-by":"publisher","first-page":"535715","DOI":"10.3389\/fevo.2020.535715","article-title":"Fragmentation and translocation distort the genetic landscape of ungulates: red deer in the Netherlands","volume":"8","author":"de Jong","year":"2020","journal-title":"Front Ecol Evol."},{"issue":"4","key":"2025042810261461500_msaf031-B18","doi-asserted-by":"publisher","first-page":"1369","DOI":"10.1111\/1755-0998.13339","article-title":"Sambar: an R package for fast, easy and reproducible population-genetic analyses of biallelic SNP data sets","volume":"21","author":"de Jong","year":"2021","journal-title":"Mol Ecol Resour"},{"issue":"1","key":"2025042810261461500_msaf031-B19","doi-asserted-by":"publisher","first-page":"153","DOI":"10.1038\/s42003-023-04514-w","article-title":"Range-wide whole-genome resequencing of the brown bear reveals drivers of intraspecies divergence","volume":"6","author":"de Jong","year":"2023","journal-title":"Commun Biol"},{"key":"2025042810261461500_msaf031-B20","doi-asserted-by":"publisher","article-title":"Calculating and interpreting FST in the genomics era","author":"de Jong","DOI":"10.1101\/2024.09.24.614506"},{"issue":"5","key":"2025042810261461500_msaf031-B21","doi-asserted-by":"publisher","first-page":"395","DOI":"10.1016\/j.mambio.2015.05.001","article-title":"Acoustics of male rutting roars in the endangered population of Mesola red deer Cervus elaphus italicus","volume":"80","author":"Della Libera","year":"2015","journal-title":"Mamm Biol."},{"issue":"5","key":"2025042810261461500_msaf031-B22","doi-asserted-by":"publisher","first-page":"491","DOI":"10.1038\/ng.806","article-title":"A framework for variation discovery and genotyping using next-generation DNA sequencing data","volume":"43","author":"DePristo","year":"2011","journal-title":"Nat Genet"},{"issue":"2","key":"2025042810261461500_msaf031-B23","doi-asserted-by":"publisher","first-page":"431","DOI":"10.1093\/zoolinnean\/zlab025","article-title":"Phylogenetics and phylogeography of red deer mtDNA lineages during the last 50 000 years in Eurasia","volume":"194","author":"Doan","year":"2022","journal-title":"Zool J Linn Soc."},{"issue":"1","key":"2025042810261461500_msaf031-B24","doi-asserted-by":"publisher","first-page":"2331","DOI":"10.1038\/s41598-017-02359-y","article-title":"Phylogeography of the Tyrrhenian red deer (Cervus elaphus corsicanus) resolved using ancient DNA of radiocarbon-dated subfossils","volume":"7","author":"Doan","year":"2017","journal-title":"Sci Rep"},{"issue":"3","key":"2025042810261461500_msaf031-B25","doi-asserted-by":"publisher","first-page":"832","DOI":"10.1016\/j.ympev.2008.09.008","article-title":"Does gene flow destroy phylogenetic signal? The performance of three methods for estimating species phylogenies in the presence of gene flow","volume":"49","author":"Eckert","year":"2008","journal-title":"Mol Phylogenet Evol"},{"issue":"19","key":"2025042810261461500_msaf031-B26","doi-asserted-by":"publisher","first-page":"3047","DOI":"10.1093\/bioinformatics\/btw354","article-title":"MultiQC: summarize analysis results for multiple tools and samples in a single report","volume":"32","author":"Ewels","year":"2016","journal-title":"Bioinformatics"},{"issue":"19","key":"2025042810261461500_msaf031-B27","doi-asserted-by":"publisher","first-page":"4413","DOI":"10.5194\/bg-21-4413-2024","article-title":"Palaeoecology of ungulates in northern Iberia during the Late Pleistocene through isotopic analysis of teeth","volume":"21","author":"Fern\u00e1ndez-Garcia","year":"2024","journal-title":"Biogeosci Discuss"},{"issue":"3","key":"2025042810261461500_msaf031-B28","doi-asserted-by":"publisher","first-page":"211","DOI":"10.1016\/j.mambio.2011.11.005","article-title":"Crossing the border? Structure of the red deer (Cervus elaphus) population from the Bavarian\u2013Bohemian forest ecosystem","volume":"77","author":"Fickel","year":"2012","journal-title":"Mamm Biol."},{"issue":"11","key":"2025042810261461500_msaf031-B29","doi-asserted-by":"publisher","first-page":"1348","DOI":"10.1111\/ecog.03031","article-title":"PaleoView: a tool for generating continuous climate projections spanning the last 21 000 years at regional and global scales","volume":"40","author":"Fordham","year":"2017","journal-title":"Ecography"},{"issue":"1","key":"2025042810261461500_msaf031-B30","doi-asserted-by":"publisher","first-page":"44","DOI":"10.1007\/s10344-007-0107-1","article-title":"Fine-scale genetic structure of red deer (Cervus elaphus) in a French temperate forest","volume":"54","author":"Frantz","year":"2008","journal-title":"Eur J Wildl Res"},{"issue":"3","key":"2025042810261461500_msaf031-B31","doi-asserted-by":"publisher","first-page":"271","DOI":"10.1111\/j.1469-7580.2011.01467.x","article-title":"Vocal anatomy, tongue protrusion behaviour and the acoustics of rutting roars in free-ranging Iberian red deer stags (Cervus elaphus hispanicus)","volume":"220","author":"Frey","year":"2012","journal-title":"J Anat"},{"issue":"8","key":"2025042810261461500_msaf031-B32","doi-asserted-by":"publisher","first-page":"925","DOI":"10.1111\/2041-210X.12382","article-title":"LEA: an R package for landscape and ecological association studies","volume":"6","author":"Frichot","year":"2015","journal-title":"Methods Ecol Evol."},{"key":"2025042810261461500_msaf031-B33","volume-title":"Deer of the world: their evolution, behaviour and ecology","author":"Geist","year":"1999","edition":"1st ed"},{"key":"2025042810261461500_msaf031-B34","author":"Geptner","year":"1988"},{"issue":"6","key":"2025042810261461500_msaf031-B35","doi-asserted-by":"publisher","first-page":"1137","DOI":"10.1007\/s10344-011-0527-9","article-title":"Low genetic variation support bottlenecks in Scandinavian red deer","volume":"57","author":"Haanes","year":"2011","journal-title":"Eur J Wildl Res"},{"issue":"2","key":"2025042810261461500_msaf031-B36","doi-asserted-by":"publisher","first-page":"229","DOI":"10.1111\/j.1469-1795.2007.00098.x","article-title":"Conservation genetics of the imperilled Barbary red deer in Tunisia","volume":"10","author":"Hajji","year":"2007","journal-title":"Anim Conserv."},{"issue":"3","key":"2025042810261461500_msaf031-B37","doi-asserted-by":"publisher","first-page":"247","DOI":"10.1006\/bijl.1996.0035","article-title":"Some genetic consequences of ice ages, and their role in divergence and speciation","volume":"58","author":"Hewitt","year":"1996","journal-title":"Biol J Linn Soc Lond."},{"issue":"1-2","key":"2025042810261461500_msaf031-B38","doi-asserted-by":"publisher","first-page":"87","DOI":"10.1111\/j.1095-8312.1999.tb01160.x","article-title":"Post-glacial re-colonization of European biota","volume":"68","author":"Hewitt","year":"1999","journal-title":"Biol J Linn Soc Lond."},{"key":"2025042810261461500_msaf031-B39","author":"Hijmans","year":"2019"},{"key":"2025042810261461500_msaf031-B40","author":"Hijmans","year":"2020"},{"issue":"1","key":"2025042810261461500_msaf031-B41","doi-asserted-by":"publisher","first-page":"43","DOI":"10.1111\/bij.12049","article-title":"Genetic variation and structure in Scandinavian red deer (Cervus elaphus): influence of ancestry, past hunting, and restoration management","volume":"109","author":"H\u00f6glund","year":"2013","journal-title":"Biol J Linn Soc Lond."},{"issue":"9","key":"2025042810261461500_msaf031-B42","doi-asserted-by":"publisher","first-page":"639","DOI":"10.1038\/nrg2611","article-title":"Genetics in geographically structured populations: defining, estimating and interpreting FST","volume":"10","author":"Holsinger","year":"2009","journal-title":"Nat Rev Genet"},{"issue":"2","key":"2025042810261461500_msaf031-B43","doi-asserted-by":"publisher","first-page":"583","DOI":"10.1093\/genetics\/132.2.583","article-title":"Estimation of levels of gene flow from DNA sequence data","volume":"132","author":"Hudson","year":"1992","journal-title":"Genetics"},{"issue":"2","key":"2025042810261461500_msaf031-B44","doi-asserted-by":"publisher","first-page":"327","DOI":"10.1007\/s10344-007-0154-7","article-title":"Seasonal migration of male red deer (Cervus elaphus) in southern Sweden and consequences for management","volume":"54","author":"Jarnemo","year":"2008","journal-title":"Eur J Wildl Res"},{"issue":"2","key":"2025042810261461500_msaf031-B45","doi-asserted-by":"publisher","first-page":"329","DOI":"10.1007\/s10164-010-0262-9","article-title":"Male red deer (Cervus elaphus) dispersal during the breeding season","volume":"29","author":"Jarnemo","year":"2011","journal-title":"J Ethol"},{"issue":"11","key":"2025042810261461500_msaf031-B46","doi-asserted-by":"publisher","first-page":"1403","DOI":"10.1093\/bioinformatics\/btn129","article-title":"Adegenet: a R package for the multivariate analysis of genetic markers","volume":"24","author":"Jombart","year":"2008","journal-title":"Bioinformatics"},{"issue":"2","key":"2025042810261461500_msaf031-B47","doi-asserted-by":"publisher","first-page":"113","DOI":"10.1007\/BF03194206","article-title":"Factors affecting daily ranges of red deer Cervus elaphus in Bia\u0142owie\u017ca Primeval Forest, Poland","volume":"52","author":"Kamler","year":"2007","journal-title":"Acta Theriol"},{"issue":"3","key":"2025042810261461500_msaf031-B48","doi-asserted-by":"publisher","first-page":"334","DOI":"10.1093\/jhered\/esu007","article-title":"Greece: a Balkan subrefuge for a remnant red deer (Cervus elaphus) population","volume":"105","author":"Karaiskou","year":"2014","journal-title":"J Hered"},{"issue":"1","key":"2025042810261461500_msaf031-B49","doi-asserted-by":"publisher","first-page":"170122","DOI":"10.1038\/sdata.2017.122","article-title":"Climatologies at high resolution for the earth","volume":"4","author":"Karger","year":"2017","journal-title":"Sci Data"},{"issue":"2","key":"2025042810261461500_msaf031-B50","doi-asserted-by":"publisher","first-page":"110","DOI":"10.1093\/jhered\/esac060","article-title":"Genomic analyses of gray fox lineages suggest ancient divergence and secondary contact in the southern Great Plains","volume":"114","author":"Kierepka","year":"2023","journal-title":"J Hered."},{"issue":"4","key":"2025042810261461500_msaf031-B51","doi-asserted-by":"publisher","first-page":"375","DOI":"10.1093\/jhered\/esv018","article-title":"Admixture of Eastern and Western European red deer lineages as a result of postglacial recolonization of the Czech Republic (central Europe)","volume":"106","author":"Krojerov\u00e1-Proke\u0161ov\u00e1","year":"2015","journal-title":"J Hered"},{"issue":"1","key":"2025042810261461500_msaf031-B52","doi-asserted-by":"publisher","first-page":"63","DOI":"10.1007\/s10344-014-0874-4","article-title":"Home range and migration patterns of male red deer Cervus elaphus in Western Carpathians","volume":"61","author":"Kropil","year":"2015","journal-title":"Eur J Wildl Res"},{"issue":"4","key":"2025042810261461500_msaf031-B53","doi-asserted-by":"publisher","first-page":"452","DOI":"10.1038\/sj.ejhg.5201340","article-title":"X-chromosome as a marker for population history: linkage disequilibrium and haplotype study in Eurasian populations","volume":"13","author":"Laan","year":"2005","journal-title":"Eur J Hum Genet"},{"issue":"21","key":"2025042810261461500_msaf031-B54","doi-asserted-by":"publisher","first-page":"2987","DOI":"10.1093\/bioinformatics\/btr509","article-title":"A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data","volume":"27","author":"Li","year":"2011","journal-title":"Bioinformatics"},{"issue":"5","key":"2025042810261461500_msaf031-B55","doi-asserted-by":"publisher","first-page":"718","DOI":"10.1093\/bioinformatics\/btq671","article-title":"Tabix: fast retrieval of sequence features from generic TAB-delimited files","volume":"27","author":"Li","year":"2011","journal-title":"Bioinformatics"},{"issue":"14","key":"2025042810261461500_msaf031-B56","doi-asserted-by":"publisher","first-page":"1754","DOI":"10.1093\/bioinformatics\/btp324","article-title":"Fast and accurate short read alignment with Burrows\u2013Wheeler transform","volume":"25","author":"Li","year":"2009","journal-title":"Bioinformatics"},{"issue":"16","key":"2025042810261461500_msaf031-B57","doi-asserted-by":"publisher","first-page":"2078","DOI":"10.1093\/bioinformatics\/btp352","article-title":"The sequence alignment\/map format and SAMtools","volume":"25","author":"Li","year":"2009","journal-title":"Bioinformatics"},{"issue":"1","key":"2025042810261461500_msaf031-B58","doi-asserted-by":"publisher","first-page":"e0262574","DOI":"10.1371\/journal.pone.0262574","article-title":"Comparison of seven SNP calling pipelines for the next-generation sequencing data of chickens","volume":"17","author":"Liu","year":"2022","journal-title":"PLoS One"},{"issue":"1667","key":"2025042810261461500_msaf031-B59","doi-asserted-by":"publisher","first-page":"2581","DOI":"10.1098\/rspb.2009.0224","article-title":"Negative density-dependent emigration of males in an increasing red deer population","volume":"276","author":"Loe","year":"2009","journal-title":"Proc R Soc Lond B Biol Sci."},{"issue":"3","key":"2025042810261461500_msaf031-B60","doi-asserted-by":"publisher","first-page":"1064","DOI":"10.1016\/j.ympev.2003.10.003","article-title":"Mitochondrial DNA phylogeography of red deer (Cervus elaphus)","volume":"31","author":"Ludt","year":"2004","journal-title":"Mol Phylogenet Evol"},{"issue":"1","key":"2025042810261461500_msaf031-B61","doi-asserted-by":"publisher","first-page":"16381","DOI":"10.1038\/s41598-022-20763-x","article-title":"Phylogeny and evolution of the genus Cervus (Cervidae, Mammalia) as revealed by complete mitochondrial genomes","volume":"12","author":"Mackiewicz","year":"2022","journal-title":"Sci Rep"},{"issue":"4","key":"2025042810261461500_msaf031-B62","doi-asserted-by":"publisher","first-page":"e0249899","DOI":"10.1371\/journal.pone.0249899","article-title":"A pseudomolecule assembly of the Rocky Mountain elk genome","volume":"16","author":"Masonbrink","year":"2021","journal-title":"PLoS One"},{"issue":"3","key":"2025042810261461500_msaf031-B63","doi-asserted-by":"publisher","first-page":"993","DOI":"10.1111\/mec.16276","article-title":"Next-generation phylogeography resolves post-glacial colonization patterns in a widespread carnivore, the red fox (Vulpes vulpes), in Europe","volume":"31","author":"McDevitt","year":"2022","journal-title":"Mol Ecol."},{"issue":"2","key":"2025042810261461500_msaf031-B64","doi-asserted-by":"publisher","first-page":"432","DOI":"10.1111\/eva.12880","article-title":"Increased genetic marker density reveals high levels of admixture between red deer and introduced Japanese sika in Kintyre, Scotland","volume":"13","author":"McFarlane","year":"2020","journal-title":"Evol Appl."},{"key":"2025042810261461500_msaf031-B103","doi-asserted-by":"publisher","DOI":"10.1111\/jbi.13124"},{"issue":"5","key":"2025042810261461500_msaf031-B65","doi-asserted-by":"publisher","first-page":"1530","DOI":"10.1093\/molbev\/msaa015","article-title":"IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era","volume":"37","author":"Minh","year":"2020","journal-title":"Mol Biol Evol."},{"issue":"1","key":"2025042810261461500_msaf031-B66","doi-asserted-by":"publisher","first-page":"120","DOI":"10.1093\/molbev\/msm248","article-title":"Strong variations of mitochondrial mutation rate across mammals\u2014the longevity hypothesis","volume":"25","author":"Nabholz","year":"2008","journal-title":"Mol Biol Evol."},{"issue":"1","key":"2025042810261461500_msaf031-B67","doi-asserted-by":"publisher","first-page":"147","DOI":"10.1111\/jbi.13989","article-title":"Winter temperature and forest cover have shaped red deer distribution in Europe and the Ural Mountains since the Late Pleistocene","volume":"48","author":"Niedzia\u0142kowska","year":"2021","journal-title":"J Biogeogr."},{"issue":"2","key":"2025042810261461500_msaf031-B68","doi-asserted-by":"publisher","first-page":"150","DOI":"10.1139\/z11-122","article-title":"Factors shaping gene flow in red deer (Cervus elaphus) in seminatural landscapes of central Europe","volume":"90","author":"Niedzia\u0142kowska","year":"2012","journal-title":"Can J Zool."},{"issue":"1","key":"2025042810261461500_msaf031-B69","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/s13364-010-0002-0","article-title":"Molecular biogeography of red deer Cervus elaphus from eastern Europe: insights from mitochondrial DNA sequences","volume":"56","author":"Niedzia\u0142kowska","year":"2011","journal-title":"Acta Theriol (Warsz)"},{"issue":"5","key":"2025042810261461500_msaf031-B70","doi-asserted-by":"publisher","first-page":"265","DOI":"10.1016\/j.ppees.2014.07.002","article-title":"Patterns and processes in plant phylogeography in the Mediterranean Basin. A review","volume":"16","author":"Nieto Feliner","year":"2014","journal-title":"Perspect Plant Ecol Evol Syst."},{"key":"2025042810261461500_msaf031-B71","first-page":"77","volume-title":"The archaeology of Europe","author":"Nilsson","year":"2020"},{"issue":"11","key":"2025042810261461500_msaf031-B72","doi-asserted-by":"publisher","first-page":"3395","DOI":"10.1111\/j.1365-294X.2005.02692.x","article-title":"Rapidly declining fine-scale spatial genetic structure in female red deer","volume":"14","author":"Nussey","year":"2005","journal-title":"Mol Ecol."},{"issue":"1","key":"2025042810261461500_msaf031-B73","doi-asserted-by":"publisher","first-page":"56","DOI":"10.1038\/sj.hdy.6800838","article-title":"Genetic consequences of human management in an introduced island population of red deer (Cervus elaphus)","volume":"97","author":"Nussey","year":"2006","journal-title":"Heredity (Edinb)"},{"key":"2025042810261461500_msaf031-B74","author":"Ortiz","year":"2019"},{"issue":"3","key":"2025042810261461500_msaf031-B75","doi-asserted-by":"publisher","first-page":"526","DOI":"10.1093\/bioinformatics\/bty633","article-title":"Ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R","volume":"35","author":"Paradis","year":"2018","journal-title":"Bioinformatics"},{"issue":"5","key":"2025042810261461500_msaf031-B76","doi-asserted-by":"publisher","first-page":"e63841","DOI":"10.1371\/journal.pone.0063841","article-title":"Roaring high and low: composition and possible functions of the Iberian stag","volume":"8","author":"Passilongo","year":"2013","journal-title":"PLoS One"},{"issue":"3","key":"2025042810261461500_msaf031-B77","doi-asserted-by":"publisher","first-page":"1065","DOI":"10.1534\/genetics.112.145037","article-title":"Ancient admixture in human history","volume":"192","author":"Patterson","year":"2012","journal-title":"Genetics"},{"issue":"2","key":"2025042810261461500_msaf031-B78","doi-asserted-by":"publisher","first-page":"199","DOI":"10.1038\/hdy.2008.111","article-title":"Genetic diversity and population structure of Scottish Highland red deer (Cervus elaphus) populations: a mitochondrial survey","volume":"102","author":"P\u00e9rez-Espona","year":"2009","journal-title":"Heredity (Edinb)."},{"issue":"4","key":"2025042810261461500_msaf031-B79","doi-asserted-by":"publisher","first-page":"981","DOI":"10.1111\/j.1365-294X.2007.03629.x","article-title":"Landscape features affect gene flow of Scottish Highland red deer (Cervus elaphus)","volume":"17","author":"P\u00e9rez-Espona","year":"2008","journal-title":"Mol Ecol."},{"issue":"3-4","key":"2025042810261461500_msaf031-B80","doi-asserted-by":"publisher","first-page":"231","DOI":"10.1016\/j.ecolmodel.2005.03.026","article-title":"Maximum entropy modeling of species geographic distributions","volume":"190","author":"Phillips","year":"2006","journal-title":"Ecol Modell."},{"issue":"19","key":"2025042810261461500_msaf031-B81","doi-asserted-by":"publisher","first-page":"5323","DOI":"10.1111\/mec.17105","article-title":"Can demographic histories explain long-term isolation and recent pulses of asymmetric gene flow between highly divergent grey fox lineages?","volume":"32","author":"Preckler-Quisquater","year":"2023","journal-title":"Mol Ecol"},{"issue":"3","key":"2025042810261461500_msaf031-B82","doi-asserted-by":"publisher","first-page":"559","DOI":"10.1086\/519795","article-title":"PLINK: a tool set for whole-genome association and population-based linkage analyses","volume":"81","author":"Purcell","year":"2007","journal-title":"Am J Hum Genet."},{"issue":"1","key":"2025042810261461500_msaf031-B83","doi-asserted-by":"publisher","first-page":"e0210282","DOI":"10.1371\/journal.pone.0210282","article-title":"Red deer in Iberia: molecular ecological studies in a southern refugium and inferences on European postglacial colonization history","volume":"14","author":"Queir\u00f3s","year":"2019","journal-title":"PLoS One"},{"issue":"1","key":"2025042810261461500_msaf031-B84","doi-asserted-by":"publisher","first-page":"19","DOI":"10.1023\/A:1016658804566","article-title":"Ten years inventorying the Iberian fauna: results and perspectives","volume":"10","author":"Ramos","year":"2001","journal-title":"Biodivers Conserv."},{"key":"2025042810261461500_msaf031-B85","volume-title":"R: a language and environment for statistical computing","author":"R Core Team","year":"2019"},{"issue":"7263","key":"2025042810261461500_msaf031-B86","doi-asserted-by":"publisher","first-page":"489","DOI":"10.1038\/nature08365","article-title":"Reconstructing Indian population history","volume":"461","author":"Reich","year":"2009","journal-title":"Nature"},{"issue":"1","key":"2025042810261461500_msaf031-B87","doi-asserted-by":"publisher","first-page":"88","DOI":"10.1186\/s13104-016-1900-2","article-title":"AdapterRemoval v2: rapid adapter trimming, identification, and read merging","volume":"9","author":"Schubert","year":"2016","journal-title":"BMC Res Notes"},{"issue":"4","key":"2025042810261461500_msaf031-B88","doi-asserted-by":"publisher","first-page":"591","DOI":"10.1007\/s10144-012-0332-7","article-title":"Leading-edge populations do not show low genetic diversity or high differentiation in a wind-pollinated tree","volume":"54","author":"Shi","year":"2012","journal-title":"Popul Ecol."},{"issue":"1","key":"2025042810261461500_msaf031-B89","doi-asserted-by":"publisher","first-page":"66","DOI":"10.1111\/j.1365-2699.2008.01986.x","article-title":"Phylogeography of red deer (Cervus elaphus) in Europe","volume":"36","author":"Skog","year":"2009","journal-title":"J Biogeogr."},{"issue":"4","key":"2025042810261461500_msaf031-B90","doi-asserted-by":"publisher","first-page":"251","DOI":"10.1111\/j.1365-2907.2006.00093.x","article-title":"Glacial refugia of mammals in Europe: evidence from fossil records","volume":"36","author":"Sommer","year":"2006","journal-title":"Mamm Rev."},{"issue":"11","key":"2025042810261461500_msaf031-B91","doi-asserted-by":"publisher","first-page":"2013","DOI":"10.1111\/j.1365-2699.2009.02187.x","article-title":"Fossil evidence and phylogeography of temperate species: \u2018glacial refugia\u2019 and post-glacial recolonization","volume":"36","author":"Sommer","year":"2009","journal-title":"J Biogeogr."},{"issue":"7-8","key":"2025042810261461500_msaf031-B92","doi-asserted-by":"publisher","first-page":"714","DOI":"10.1016\/j.quascirev.2007.11.016","article-title":"Late Quaternary distribution dynamics and phylogeography of the red deer (Cervus elaphus) in Europe","volume":"27","author":"Sommer","year":"2008","journal-title":"Quat Sci Rev."},{"issue":"8","key":"2025042810261461500_msaf031-B93","doi-asserted-by":"publisher","first-page":"2041","DOI":"10.1111\/mec.16849","article-title":"Integrating top-down and bottom-up approaches to understand the genetic architecture of speciation across a monkeyflower hybrid zone","volume":"32","author":"Stankowski","year":"2023","journal-title":"Mol Ecol"},{"issue":"2","key":"2025042810261461500_msaf031-B94","doi-asserted-by":"publisher","first-page":"205","DOI":"10.1007\/s42991-023-00397-w","article-title":"Between the lines: mitochondrial lineages in the heavily managed red deer population of Belarus","volume":"104","author":"Valnisty","year":"2024","journal-title":"Mamm Biol"},{"issue":"2","key":"2025042810261461500_msaf031-B95","doi-asserted-by":"publisher","first-page":"87","DOI":"10.1111\/j.1365-2907.1992.tb00124.x","article-title":"Zooarchaeology and the biogeographical history of the mammals of Corsica and Sardinia since the last ice age","volume":"22","author":"Vigne","year":"1992","journal-title":"Mamm Rev."},{"issue":"1","key":"2025042810261461500_msaf031-B96","doi-asserted-by":"publisher","first-page":"57","DOI":"10.1007\/s10211-012-0133-1","article-title":"Spectrographic analysis points to source\u2013filter coupling in rutting roars of Iberian red deer","volume":"16","author":"Volodin","year":"2013","journal-title":"acta ethol"},{"key":"2025042810261461500_msaf031-B97","doi-asserted-by":"publisher","first-page":"54","DOI":"10.1016\/j.mambio.2018.10.009","article-title":"Rutting roars in native Pannonian red deer of Southern Hungary and the evidence of acoustic divergence of male sexual vocalization between Eastern and Western European red deer (Cervus elaphus)","volume":"94","author":"Volodin","year":"2019","journal-title":"Mamm Biol."},{"key":"2025042810261461500_msaf031-B98","doi-asserted-by":"publisher","first-page":"62","DOI":"10.1016\/j.gde.2016.08.002","article-title":"Genomic signatures of sex-biased demography: progress and prospects","volume":"41","author":"Webster","year":"2016","journal-title":"Curr Opin Genet Dev."},{"issue":"5951","key":"2025042810261461500_msaf031-B99","doi-asserted-by":"publisher","first-page":"433","DOI":"10.1126\/science.1176620","article-title":"Complete resequencing of 40 genomes reveals domestication events and genes in silkworm (Bombyx)","volume":"326","author":"Xia","year":"2009","journal-title":"Science"},{"issue":"4","key":"2025042810261461500_msaf031-B100","doi-asserted-by":"publisher","first-page":"318","DOI":"10.1093\/jhered\/esw011","article-title":"Genetic structure and effective population sizes in European red deer (Cervus elaphus) at a continental scale: insights from microsatellite DNA","volume":"107","author":"Zachos","year":"2016","journal-title":"J Hered"},{"issue":"2","key":"2025042810261461500_msaf031-B101","doi-asserted-by":"publisher","first-page":"175","DOI":"10.2981\/07-075","article-title":"Population viability analysis and genetic diversity of the endangered red deer Cervus elaphus population from Mesola, Italy","volume":"15","author":"Zachos","year":"2009","journal-title":"Wildlife Biol."},{"issue":"1","key":"2025042810261461500_msaf031-B102","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1111\/j.1600-048X.2009.04903.x","article-title":"Drawbacks with the use of microsatellites in phylogeography: the song sparrow Melospiza melodia as a case study","volume":"41","author":"Zink","year":"2010","journal-title":"J Avian Biol."}],"container-title":["Molecular Biology and Evolution"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/mbe\/advance-article-pdf\/doi\/10.1093\/molbev\/msaf031\/61770766\/msaf031.pdf","content-type":"application\/pdf","content-version":"am","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/mbe\/article-pdf\/42\/2\/msaf031\/61770766\/msaf031.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/mbe\/article-pdf\/42\/2\/msaf031\/61770766\/msaf031.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,4,28]],"date-time":"2025-04-28T10:26:23Z","timestamp":1745835983000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/mbe\/article\/doi\/10.1093\/molbev\/msaf031\/8002771"}},"subtitle":[],"editor":[{"given":"Xuming","family":"Zhou","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2025,2]]},"references-count":103,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2025,2,3]]}},"URL":"https:\/\/doi.org\/10.1093\/molbev\/msaf031","relation":{},"ISSN":["0737-4038","1537-1719"],"issn-type":[{"value":"0737-4038","type":"print"},{"value":"1537-1719","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2025,2]]},"published":{"date-parts":[[2025,2]]},"article-number":"msaf031"}}