{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,6]],"date-time":"2026-10-06T12:28:46Z","timestamp":1791289726238,"version":"4.3.0"},"reference-count":116,"publisher":"Oxford University Press (OUP)","issue":"7","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013,7]]},"DOI":"10.1093\/molbev\/mst066","type":"journal-article","created":{"date-parts":[[2013,4,6]],"date-time":"2013-04-06T04:20:38Z","timestamp":1365222038000},"page":"1574-1587","source":"Crossref","is-referenced-by-count":175,"title":["Crossing the Species Barrier: Genomic Hotspots of Introgression between Two Highly Divergent Ciona intestinalis Species"],"prefix":"10.1093","volume":"30","author":[{"given":"Camille","family":"Roux","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Georgia","family":"Tsagkogeorga","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Nicolas","family":"Bierne","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Nicolas","family":"Galtier","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2013,5,11]]},"reference":[{"key":"key\n\t\t\t\t20170413074108_mst066-B1","doi-asserted-by":"crossref","first-page":"229","DOI":"10.1111\/j.1420-9101.2012.02599.x","article-title":"Hybridization and speciation","volume":"26","author":"Abbott","year":"2013","journal-title":"J Evol Biol."},{"issue":"5585","key":"key\n\t\t\t\t20170413074108_mst066-B2","doi-asserted-by":"crossref","first-page":"1301","DOI":"10.1126\/science.1072104","article-title":"Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes","volume":"297","author":"Aparicio","year":"2002","journal-title":"Science"},{"issue":"3","key":"key\n\t\t\t\t20170413074108_mst066-B3","doi-asserted-by":"crossref","first-page":"562","DOI":"10.1105\/tpc.160370","article-title":"Transfer and origin of adaptations through natural hybridization: were Anderson and Stebbins right?","volume":"16","author":"Arnold","year":"2004","journal-title":"Plant Cell"},{"key":"key\n\t\t\t\t20170413074108_mst066-B4","doi-asserted-by":"crossref","first-page":"329","DOI":"10.1093\/oso\/9780198506607.003.0025","article-title":"The evolutionary consequences of gene flow and local adaptation: future approaches","volume-title":"Dispersal","author":"Barton","year":"2001"},{"key":"key\n\t\t\t\t20170413074108_mst066-B5","doi-asserted-by":"crossref","first-page":"267","DOI":"10.1111\/jeb.12015","article-title":"Does hybridisation influence speciation?","volume":"26","author":"Barton","year":"2013","journal-title":"J Evol Biol."},{"issue":"3","key":"key\n\t\t\t\t20170413074108_mst066-B6","doi-asserted-by":"crossref","first-page":"357","DOI":"10.1038\/hdy.1986.135","article-title":"The barrier to genetic exchange between hybridising populations","volume":"57","author":"Barton","year":"1986","journal-title":"Heredity"},{"issue":"3","key":"key\n\t\t\t\t20170413074108_mst066-B7","doi-asserted-by":"crossref","first-page":"436","DOI":"10.1111\/j.1365-294X.2009.04515.x","article-title":"In defence of model-based inference in phylogeography","volume":"19","author":"Beaumont","year":"2010","journal-title":"Mol Ecol."},{"issue":"4","key":"key\n\t\t\t\t20170413074108_mst066-B8","doi-asserted-by":"crossref","first-page":"2025","DOI":"10.1093\/genetics\/162.4.2025","article-title":"Approximate Bayesian computation in population genetics","volume":"162","author":"Beaumont","year":"2002","journal-title":"Genetics"},{"issue":"10","key":"key\n\t\t\t\t20170413074108_mst066-B9","doi-asserted-by":"crossref","first-page":"1505","DOI":"10.1101\/gr.6409707","article-title":"A new approach to estimate parameters of speciation models with application to apes","volume":"17","author":"Becquet","year":"2007","journal-title":"Genome Res."},{"issue":"3","key":"key\n\t\t\t\t20170413074108_mst066-B10","doi-asserted-by":"crossref","first-page":"148","DOI":"10.1016\/j.tree.2006.11.004","article-title":"Cryptic species as a window on diversity and conservation","volume":"22","author":"Bickford","year":"2007","journal-title":"Trends Ecol Evol."},{"issue":"11","key":"key\n\t\t\t\t20170413074108_mst066-B13","doi-asserted-by":"crossref","first-page":"3254","DOI":"10.1111\/j.1558-5646.2010.01050.x","article-title":"The distinctive footprints of local hitchhiking in a varied environment and global hitchhiking in a subdivided population","volume":"64","author":"Bierne","year":"2010","journal-title":"Evolution"},{"key":"key\n\t\t\t\t20170413074108_mst066-B11","doi-asserted-by":"crossref","first-page":"1253","DOI":"10.1098\/rspb.2005.3440","article-title":"Fitness landscapes support the dominance theory of postzygotic isolation in the mussels Mytilus edulis and M. galloprovincialis","volume":"273","author":"Bierne","year":"2006","journal-title":"Proc Biol Sci."},{"issue":"2","key":"key\n\t\t\t\t20170413074108_mst066-B12","doi-asserted-by":"crossref","first-page":"447","DOI":"10.1046\/j.1365-294X.2003.01730.x","article-title":"Introgression patterns in the mosaic hybrid zone between Mytilus edulis and M. galloprovincialis","volume":"12","author":"Bierne","year":"2003","journal-title":"Mol Ecol."},{"issue":"5914","key":"key\n\t\t\t\t20170413074108_mst066-B14","doi-asserted-by":"crossref","first-page":"623","DOI":"10.1126\/science.1165917","article-title":"Divergent evolution of duplicate genes leads to genetic incompatibilities within A. thaliana","volume":"323","author":"Bikard","year":"2009","journal-title":"Science"},{"issue":"5","key":"key\n\t\t\t\t20170413074108_mst066-B15","doi-asserted-by":"crossref","first-page":"461","DOI":"10.1007\/s00239-009-9211-z","article-title":"The flow of antimicrobial peptide genes through a genetic barrier between Mytilus edulis and M. galloprovincialis","volume":"68","author":"Boon","year":"2009","journal-title":"J Mol Evol."},{"issue":"7115","key":"key\n\t\t\t\t20170413074108_mst066-B16","doi-asserted-by":"crossref","first-page":"85","DOI":"10.1038\/nature05241","article-title":"Deuterostome phylogeny reveals monophyletic chordates and the new phylum Xenoturbellida","volume":"444","author":"Bourlat","year":"2006","journal-title":"Nature"},{"issue":"10","key":"key\n\t\t\t\t20170413074108_mst066-B17","doi-asserted-by":"crossref","first-page":"2070","DOI":"10.1111\/j.0014-3820.2001.tb01322.x","article-title":"Evolutionary implications of divergent clines in an avian (Manacus: Aves) hybrid zone","volume":"55","author":"Brumfield","year":"2001","journal-title":"Evolution"},{"issue":"4","key":"key\n\t\t\t\t20170413074108_mst066-B18","doi-asserted-by":"crossref","first-page":"409","DOI":"10.1007\/s10709-008-9321-3","article-title":"Population genomics and speciation","volume":"138","author":"Butlin","year":"2010","journal-title":"Genetica"},{"issue":"22","key":"key\n\t\t\t\t20170413074108_mst066-B19","doi-asserted-by":"crossref","first-page":"9364","DOI":"10.1073\/pnas.0610158104","article-title":"Cryptic speciation in a model invertebrate chordate","volume":"104","author":"Caputi","year":"2007","journal-title":"Proc Natl Acad Sci U S A."},{"issue":"10","key":"key\n\t\t\t\t20170413074108_mst066-B20","doi-asserted-by":"crossref","first-page":"2600","DOI":"10.1111\/j.1558-5646.2008.00477.x","article-title":"Haldane\u2019s rule in an avian system: using cline theory and divergence population genetics to test for differential introgression of mitochondrial, autosomal, and sex-linked loci across the Passerina bunting hybrid zone","volume":"62","author":"Carling","year":"2008","journal-title":"Evolution"},{"issue":"8","key":"key\n\t\t\t\t20170413074108_mst066-B21","doi-asserted-by":"crossref","first-page":"e1000168","DOI":"10.1371\/journal.pgen.1000168","article-title":"Repeated adaptive introgression at a gene under multiallelic balancing selection","volume":"4","author":"Castric","year":"2008","journal-title":"PLoS Genet."},{"issue":"6","key":"key\n\t\t\t\t20170413074108_mst066-B22","doi-asserted-by":"crossref","first-page":"1461","DOI":"10.1046\/j.1365-294X.2003.01813.x","article-title":"Differential patterns of hybridization and introgression between the swallowtails Papilio machaon and P. hospiton from Sardinia and Corsica islands (Lepidoptera, Papilionidae)","volume":"12","author":"Cianchi","year":"2003","journal-title":"Mol Ecol."},{"issue":"15","key":"key\n\t\t\t\t20170413074108_mst066-B23","doi-asserted-by":"crossref","first-page":"7730","DOI":"10.1073\/pnas.94.15.7730","article-title":"Neutral behavior of shared polymorphism","volume":"94","author":"Clark","year":"1997","journal-title":"Proc Natl Acad Sci U S A."},{"key":"key\n\t\t\t\t20170413074108_mst066-B24","doi-asserted-by":"crossref","first-page":"401","DOI":"10.1186\/1471-2105-11-401","article-title":"Inference on population history and model checking using DNA sequence and microsatellite data with the software DIYABC (v1.0)","volume":"11","author":"Cornuet","year":"2010","journal-title":"BMC Bioinformatics"},{"issue":"23","key":"key\n\t\t\t\t20170413074108_mst066-B25","doi-asserted-by":"crossref","first-page":"2713","DOI":"10.1093\/bioinformatics\/btn514","article-title":"Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation","volume":"24","author":"Cornuet","year":"2008","journal-title":"Bioinformatics"},{"issue":"7","key":"key\n\t\t\t\t20170413074108_mst066-B26","doi-asserted-by":"crossref","first-page":"410","DOI":"10.1016\/j.tree.2010.04.001","article-title":"Approximate Bayesian computation (ABC) in practice","volume":"25","author":"Csill\u00e9ry","year":"2010","journal-title":"Trends Ecol Evol."},{"key":"key\n\t\t\t\t20170413074108_mst066-B27","doi-asserted-by":"crossref","first-page":"475","DOI":"10.1111\/j.2041-210X.2011.00179.x","article-title":"abc: an R package for approximate Bayesian computation (ABC)","volume":"3","author":"Csillery","year":"2012","journal-title":"Methods Ecol Evol."},{"issue":"1","key":"key\n\t\t\t\t20170413074108_mst066-B28","doi-asserted-by":"crossref","first-page":"177","DOI":"10.3391\/ai.2009.4.1.18","article-title":"Ecological interactions between the vase tunicate (Ciona intestinalis) and the farmed blue mussel (Mytilus edulis) in Nova Scotia, Canada","volume":"4","author":"Daigle","year":"2009","journal-title":"Aquatic Invasions"},{"issue":"5601","key":"key\n\t\t\t\t20170413074108_mst066-B29","doi-asserted-by":"crossref","first-page":"2157","DOI":"10.1126\/science.1080049","article-title":"The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins","volume":"298","author":"Dehal","year":"2002","journal-title":"Science"},{"issue":"7079","key":"key\n\t\t\t\t20170413074108_mst066-B30","doi-asserted-by":"crossref","first-page":"965","DOI":"10.1038\/nature04336","article-title":"Tunicates and not cephalochordates are the closest living relatives of vertebrates","volume":"439","author":"Delsuc","year":"2006","journal-title":"Nature"},{"issue":"2","key":"key\n\t\t\t\t20170413074108_mst066-B31","doi-asserted-by":"crossref","first-page":"561","DOI":"10.1016\/j.ydbio.2009.02.007","article-title":"The evolutionarily conserved leprecan gene: its regulation by Brachyury and its role in the developing Ciona notochord","volume":"328","author":"Dunn","year":"2009","journal-title":"Dev Biol."},{"issue":"45","key":"key\n\t\t\t\t20170413074108_mst066-B32","doi-asserted-by":"crossref","first-page":"17614","DOI":"10.1073\/pnas.0708280104","article-title":"Statistical evaluation of alternative models of human evolution","volume":"104","author":"Fagundes","year":"2007","journal-title":"Proc Natl Acad Sci U S A."},{"issue":"7","key":"key\n\t\t\t\t20170413074108_mst066-B33","doi-asserted-by":"crossref","first-page":"342","DOI":"10.1016\/j.tig.2012.03.009","article-title":"The genomics of speciation-with-gene-flow","volume":"28","author":"Feder","year":"2012","journal-title":"Trends Genet."},{"issue":"3","key":"key\n\t\t\t\t20170413074108_mst066-B34","doi-asserted-by":"crossref","first-page":"693","DOI":"10.1093\/genetics\/133.3.693","article-title":"Statistical tests of neutrality of mutations","volume":"133","author":"Fu","year":"1993","journal-title":"Genetics"},{"key":"key\n\t\t\t\t20170413074108_mst066-B35","article-title":"Inferring population size changes with sequence and SNP data: lessons from human bottlenecks","author":"Gattepaille","journal-title":"Heredity"},{"issue":"4","key":"key\n\t\t\t\t20170413074108_mst066-B36","doi-asserted-by":"crossref","first-page":"650","DOI":"10.1111\/j.1755-0998.2011.03010.x","article-title":"Next-generation sequencing of transcriptomes: a guide to RNA isolation in nonmodel animals","volume":"11","author":"Gayral","year":"2011","journal-title":"Mol Ecol Resour."},{"issue":"1","key":"key\n\t\t\t\t20170413074108_mst066-B37","doi-asserted-by":"crossref","first-page":"459","DOI":"10.1093\/molbev\/msq235","article-title":"Maintenance of fungal pathogen species that are specialized to different hosts: allopatric divergence and introgression through secondary contact","volume":"28","author":"Gladieux","year":"2011","journal-title":"Mol Biol Evol."},{"issue":"1","key":"key\n\t\t\t\t20170413074108_mst066-B38","doi-asserted-by":"crossref","first-page":"e1455","DOI":"10.1371\/journal.pone.0001455","article-title":"On the origin and spread of the Scab disease of apple: out of central Asia","volume":"3","author":"Gladieux","year":"2008","journal-title":"PLoS One"},{"key":"key\n\t\t\t\t20170413074108_mst066-B114","doi-asserted-by":"crossref","first-page":"14","DOI":"10.1111\/jeb.12046","article-title":"Differential introgression from a sister species explains high FST outlier loci within a mussel species","volume":"26","author":"Gosset","year":"2013","journal-title":"J Evol Biol."},{"issue":"3","key":"key\n\t\t\t\t20170413074108_mst066-B39","doi-asserted-by":"crossref","first-page":"e1002495","DOI":"10.1371\/journal.pgen.1002495","article-title":"Contrasted patterns of molecular evolution in dominant and recessive self-incompatibility haplotypes in Arabidopsis","volume":"8","author":"Goubet","year":"2012","journal-title":"PLoS Genet."},{"issue":"1","key":"key\n\t\t\t\t20170413074108_mst066-B40","doi-asserted-by":"crossref","first-page":"409","DOI":"10.1534\/genetics.104.034199","article-title":"Bayesian estimation of recent migration rates after a spatial expansion","volume":"170","author":"Hamilton","year":"2005","journal-title":"Genetics"},{"issue":"5875","key":"key\n\t\t\t\t20170413074108_mst066-B41","doi-asserted-by":"crossref","first-page":"548","DOI":"10.1126\/science.1152488","article-title":"Mechanism of self-sterility in a hermaphroditic chordate","volume":"320","author":"Harada","year":"2008","journal-title":"Science"},{"key":"key\n\t\t\t\t20170413074108_mst066-B42","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1093\/oso\/9780195069174.003.0001","article-title":"Hybrids and hybrid zones: historical perspective","volume-title":"Hybrid zones and the evolutionary process","author":"Harrison","year":"1993"},{"key":"key\n\t\t\t\t20170413074108_mst066-B43","doi-asserted-by":"crossref","first-page":"277","DOI":"10.1111\/j.1365-294X.2009.04482.x","article-title":"mlRho\u2014a program for estimating the population mutation and recombination rates from shotgun-sequenced diploid genomes","volume":"19","author":"Haubold","year":"2010","journal-title":"Mol Ecol."},{"issue":"2","key":"key\n\t\t\t\t20170413074108_mst066-B44","doi-asserted-by":"crossref","first-page":"277","DOI":"10.1046\/j.1420-9101.2001.00273.x","article-title":"Male-biased gene flow across an avian hybrid zone: evidence from mitochondrial and microsatellite DNA","volume":"14","author":"Helbig","year":"2001","journal-title":"J Evol Biol."},{"issue":"7405","key":"key\n\t\t\t\t20170413074108_mst066-B45","doi-asserted-by":"crossref","first-page":"94","DOI":"10.1038\/nature11041","article-title":"Butterfly genome reveals promiscuous exchange of mimicry adaptations among species","volume":"487","author":"Heliconius Genome Consortium","year":"2012","journal-title":"Nature"},{"issue":"6789","key":"key\n\t\t\t\t20170413074108_mst066-B46","doi-asserted-by":"crossref","first-page":"907","DOI":"10.1038\/35016000","article-title":"The genetic legacy of the quaternary ice ages","volume":"405","author":"Hewitt","year":"2000","journal-title":"Nature"},{"issue":"2","key":"key\n\t\t\t\t20170413074108_mst066-B47","doi-asserted-by":"crossref","first-page":"747","DOI":"10.1534\/genetics.103.024182","article-title":"Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis","volume":"167","author":"Hey","year":"2004","journal-title":"Genetics"},{"issue":"8","key":"key\n\t\t\t\t20170413074108_mst066-B48","doi-asserted-by":"crossref","first-page":"2785","DOI":"10.1073\/pnas.0611164104","article-title":"Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics","volume":"104","author":"Hey","year":"2007","journal-title":"Proc Natl Acad Sci U S A."},{"issue":"5","key":"key\n\t\t\t\t20170413074108_mst066-B49","doi-asserted-by":"crossref","first-page":"1413","DOI":"10.1111\/j.1558-5646.2011.01542.x","article-title":"Population genetics and objectivity in species diagnosis","volume":"66","author":"Hey","year":"2012","journal-title":"Evolution"},{"issue":"2","key":"key\n\t\t\t\t20170413074108_mst066-B50","doi-asserted-by":"crossref","first-page":"e7","DOI":"10.1371\/journal.pgen.0030007","article-title":"Genomic relationships and speciation times of human, chimpanzee, and gorilla inferred from a coalescent hidden Markov model","volume":"3","author":"Hobolth","year":"2007","journal-title":"PLoS Genet."},{"issue":"6","key":"key\n\t\t\t\t20170413074108_mst066-B51","doi-asserted-by":"crossref","first-page":"529","DOI":"10.1002\/bies.10302","article-title":"The Ciona intestinalis genome: when the constraints are off","volume":"25","author":"Holland","year":"2003","journal-title":"Bioessays"},{"key":"key\n\t\t\t\t20170413074108_mst066-B52","doi-asserted-by":"crossref","first-page":"118","DOI":"10.1038\/ngeo729","article-title":"Influence of Bering Strait flow and North Atlantic circulation on glacial sea-level changes","volume":"3","author":"Hu","year":"2010","journal-title":"Nat Geosci."},{"key":"key\n\t\t\t\t20170413074108_mst066-B53","doi-asserted-by":"crossref","first-page":"337","DOI":"10.1093\/bioinformatics\/18.2.337","article-title":"Generating samples under a Wright-Fisher neutral model of genetic variation","volume":"18","author":"Hudson","year":"2002","journal-title":"Bioinformatics"},{"issue":"2","key":"key\n\t\t\t\t20170413074108_mst066-B54","doi-asserted-by":"crossref","first-page":"514","DOI":"10.1111\/j.1558-5646.2008.00566.x","article-title":"A multilocus test of simultaneous divergence across the Isthmus of Panama using snapping shrimp in the genus Alpheus","volume":"63","author":"Hurt","year":"2009","journal-title":"Evolution"},{"issue":"5904","key":"key\n\t\t\t\t20170413074108_mst066-B55","doi-asserted-by":"crossref","first-page":"1116","DOI":"10.1126\/science.1164371","article-title":"Regulatory genes control a key morphological and ecological trait transferred between species","volume":"322","author":"Kim","year":"2008","journal-title":"Science"},{"issue":"4","key":"key\n\t\t\t\t20170413074108_mst066-B56","doi-asserted-by":"crossref","first-page":"1913","DOI":"10.1093\/genetics\/156.4.1913","article-title":"The population genetics of the origin and divergence of the Drosophila simulans complex species","volume":"156","author":"Kliman","year":"2000","journal-title":"Genetics"},{"issue":"1412","key":"key\n\t\t\t\t20170413074108_mst066-B57","doi-asserted-by":"crossref","first-page":"2257","DOI":"10.1098\/rspb.1998.0568","article-title":"New dates and new rates for divergence across the Isthmus of Panama","volume":"265","author":"Knowlton","year":"1998","journal-title":"Proc R Soc Lond B Biol Sci."},{"issue":"5114","key":"key\n\t\t\t\t20170413074108_mst066-B58","doi-asserted-by":"crossref","first-page":"1629","DOI":"10.1126\/science.8503007","article-title":"Divergence in proteins, mitochondrial DNA, and reproductive compatibility across the isthmus of Panama","volume":"260","author":"Knowlton","year":"1993","journal-title":"Science"},{"issue":"4","key":"key\n\t\t\t\t20170413074108_mst066-B59","doi-asserted-by":"crossref","first-page":"675","DOI":"10.1007\/s002270050289","article-title":"Non-indigenous ascidians in southern California harbors and marinas","volume":"130","author":"Lambert","year":"1998","journal-title":"Marine Biol."},{"issue":"6003","key":"key\n\t\t\t\t20170413074108_mst066-B60","doi-asserted-by":"crossref","first-page":"512","DOI":"10.1126\/science.1195755","article-title":"Widespread divergence between incipient Anopheles gambiae species revealed by whole genome sequences","volume":"330","author":"Lawniczak","year":"2010","journal-title":"Science"},{"key":"key\n\t\t\t\t20170413074108_mst066-B61","doi-asserted-by":"crossref","first-page":"63","DOI":"10.1146\/annurev.ecolsys.38.091206.095815","article-title":"The Great American Schism: divergence of marine organisms after the rise of the central American Isthmus","volume":"39","author":"Lessios","year":"2008","journal-title":"Annu Rev Ecol Evol Syst."},{"issue":"14","key":"key\n\t\t\t\t20170413074108_mst066-B62","doi-asserted-by":"crossref","first-page":"1754","DOI":"10.1093\/bioinformatics\/btp324","article-title":"Fast and accurate short read alignment with Burrows-Wheeler transform","volume":"25","author":"Li","year":"2009","journal-title":"Bioinformatics"},{"issue":"9","key":"key\n\t\t\t\t20170413074108_mst066-B63","doi-asserted-by":"crossref","first-page":"e1002932","DOI":"10.1371\/journal.pgen.1002932","article-title":"A genome-wide association study identifies five loci influencing facial morphology in Europeans","volume":"8","author":"Liu","year":"2012","journal-title":"PLoS Genet."},{"issue":"1","key":"key\n\t\t\t\t20170413074108_mst066-B64","doi-asserted-by":"crossref","first-page":"197","DOI":"10.1534\/genetics.104.033597","article-title":"Multilocus analysis of introgression between two sympatric sister species of Drosophila: Drosophila yakuba and D. santomea","volume":"171","author":"Llopart","year":"2005","journal-title":"Genetics"},{"issue":"7133","key":"key\n\t\t\t\t20170413074108_mst066-B65","doi-asserted-by":"crossref","first-page":"279","DOI":"10.1038\/nature05706","article-title":"Hybrid speciation","volume":"446","author":"Mallet","year":"2007","journal-title":"Nature"},{"issue":"9","key":"key\n\t\t\t\t20170413074108_mst066-B66","doi-asserted-by":"crossref","first-page":"e243","DOI":"10.1371\/journal.pbio.0050243","article-title":"High-resolution genome-wide dissection of the two rules of speciation in Drosophila","volume":"5","author":"Masly","year":"2007","journal-title":"PLoS Biol."},{"issue":"5998","key":"key\n\t\t\t\t20170413074108_mst066-B67","doi-asserted-by":"crossref","first-page":"1518","DOI":"10.1126\/science.1193440","article-title":"A test of the snowball theory for the rate of evolution of hybrid incompatibilities","volume":"329","author":"Matute","year":"2010","journal-title":"Science"},{"key":"key\n\t\t\t\t20170413074108_mst066-B68","doi-asserted-by":"crossref","first-page":"9724","DOI":"10.1073\/pnas.1000939107","article-title":"Widespread genomic divergence during sympatric speciation","volume":"107","author":"Michel","year":"2010","journal-title":"Proc Natl Acad Sci U S A."},{"issue":"5998","key":"key\n\t\t\t\t20170413074108_mst066-B69","doi-asserted-by":"crossref","first-page":"1521","DOI":"10.1126\/science.1193063","article-title":"Hybrid incompatibility \u201csnowballs\u201d between Solanum species","volume":"329","author":"Moyle","year":"2010","journal-title":"Science"},{"issue":"6","key":"key\n\t\t\t\t20170413074108_mst066-B70","doi-asserted-by":"crossref","first-page":"1400","DOI":"10.1111\/j.1558-5646.2008.00366.x","article-title":"Hybrid zone origins, species boundaries, and the evolution of wing-pattern diversity in a polytypic species complex of North American admiral butterflies (Nymphalidae: Limenitis)","volume":"62","author":"Mullen","year":"2008","journal-title":"Evolution"},{"issue":"2","key":"key\n\t\t\t\t20170413074108_mst066-B71","doi-asserted-by":"crossref","first-page":"885","DOI":"10.1093\/genetics\/158.2.885","article-title":"Distinguishing migration from isolation: a Markov chain Monte Carlo approach","volume":"158","author":"Nielsen","year":"2001","journal-title":"Genetics"},{"issue":"5","key":"key\n\t\t\t\t20170413074108_mst066-B72","doi-asserted-by":"crossref","first-page":"1839","DOI":"10.1007\/s00227-007-0617-0","article-title":"Genealogical relationships within and among shallow-water Ciona species (Ascidiacea)","volume":"151","author":"Nydam","year":"2007","journal-title":"Marine Biol."},{"issue":"2","key":"key\n\t\t\t\t20170413074108_mst066-B73","doi-asserted-by":"crossref","first-page":"718","DOI":"10.1016\/j.ympev.2010.03.042","article-title":"Polymorphism and divergence within the ascidian genus Ciona","volume":"56","author":"Nydam","year":"2010","journal-title":"Mol Phylogenet Evol."},{"issue":"2","key":"key\n\t\t\t\t20170413074108_mst066-B74","doi-asserted-by":"crossref","first-page":"429","DOI":"10.1111\/j.1558-5646.2010.01153.x","article-title":"Introgression despite substantial divergence in a broadcast spawning marine invertebrate","volume":"65","author":"Nydam","year":"2011","journal-title":"Evolution"},{"issue":"4","key":"key\n\t\t\t\t20170413074108_mst066-B75","doi-asserted-by":"crossref","first-page":"1805","DOI":"10.1093\/genetics\/139.4.1805","article-title":"The population genetics of speciation: the evolution of hybrid incompatibilities","volume":"139","author":"Orr","year":"1995","journal-title":"Genetics"},{"issue":"6","key":"key\n\t\t\t\t20170413074108_mst066-B76","doi-asserted-by":"crossref","first-page":"e1002752","DOI":"10.1371\/journal.pgen.1002752","article-title":"Adaptive introgression across species boundaries in Heliconius butterflies","volume":"8","author":"Pardo-Diaz","year":"2012","journal-title":"PLoS Genet."},{"key":"key\n\t\t\t\t20170413074108_mst066-B77","doi-asserted-by":"crossref","first-page":"1103","DOI":"10.1038\/nature04789","article-title":"Genetic evidence for complex speciation of humans and chimpanzees","volume":"441","author":"Patterson","year":"2006","journal-title":"Nature"},{"issue":"3","key":"key\n\t\t\t\t20170413074108_mst066-B78","doi-asserted-by":"crossref","first-page":"e1001342","DOI":"10.1371\/journal.pgen.1001342","article-title":"A molecular phylogeny of living primates","volume":"7","author":"Perelman","year":"2011","journal-title":"PLoS Genet."},{"issue":"3","key":"key\n\t\t\t\t20170413074108_mst066-B79","doi-asserted-by":"crossref","first-page":"955","DOI":"10.1093\/genetics\/163.3.955","article-title":"A fine-scale genetic analysis of hybrid incompatibilities in Drosophila","volume":"163","author":"Presgraves","year":"2003","journal-title":"Genetics"},{"issue":"12","key":"key\n\t\t\t\t20170413074108_mst066-B80","doi-asserted-by":"crossref","first-page":"1791","DOI":"10.1093\/oxfordjournals.molbev.a026091","article-title":"Population growth of human Y chromosomes: a study of Y chromosome microsatellites","volume":"16","author":"Pritchard","year":"1999","journal-title":"Mol Biol Evol."},{"issue":"1","key":"key\n\t\t\t\t20170413074108_mst066-B81","doi-asserted-by":"crossref","first-page":"555","DOI":"10.1534\/genetics.107.083006","article-title":"Statistical power analysis of neutrality tests under demographic expansions, contractions and bottlenecks with recombination","volume":"179","author":"Ram\u00edrez-Soriano","year":"2008","journal-title":"Genetics"},{"issue":"12","key":"key\n\t\t\t\t20170413074108_mst066-B82","doi-asserted-by":"crossref","first-page":"2092","DOI":"10.1093\/oxfordjournals.molbev.a004034","article-title":"Statistical properties of new neutrality tests against population growth","volume":"19","author":"Ramos-Onsins","year":"2002","journal-title":"Mol Biol Evol."},{"issue":"1","key":"key\n\t\t\t\t20170413074108_mst066-B83","doi-asserted-by":"crossref","first-page":"373","DOI":"10.1534\/genetics.166.1.373","article-title":"Multilocus analysis of variation and speciation in the closely related species Arabidopsis halleri and A. lyrata","volume":"166","author":"Ramos-Onsins","year":"2004","journal-title":"Genetics"},{"issue":"8","key":"key\n\t\t\t\t20170413074108_mst066-B84","doi-asserted-by":"crossref","first-page":"1311","DOI":"10.1007\/s10530-007-9205-y","article-title":"Process of invasiveness among exotic tunicates in Prince Edward Island, Canada","volume":"10","author":"Ramsay","year":"2008","journal-title":"Biol Invasions."},{"issue":"1","key":"key\n\t\t\t\t20170413074108_mst066-B85","doi-asserted-by":"crossref","first-page":"297","DOI":"10.2989\/18142320509504088","article-title":"Marine alien species of South Africa\u2014status and impacts","volume":"27","author":"Robinson","year":"2005","journal-title":"African J Marine Sci."},{"issue":"4","key":"key\n\t\t\t\t20170413074108_mst066-B86","doi-asserted-by":"crossref","first-page":"1399","DOI":"10.1534\/genetics.108.097238","article-title":"Historical divergence and gene flow in the genus Zea","volume":"181","author":"Ross-Ibarra","year":"2009","journal-title":"Genetics"},{"issue":"6","key":"key\n\t\t\t\t20170413074108_mst066-B87","doi-asserted-by":"crossref","first-page":"e2411","DOI":"10.1371\/journal.pone.0002411","article-title":"Patterns of polymorphism and demographic history in natural populations of Arabidopsis lyrata","volume":"3","author":"Ross-Ibarra","year":"2008","journal-title":"PLoS One"},{"issue":"11","key":"key\n\t\t\t\t20170413074108_mst066-B88","doi-asserted-by":"crossref","first-page":"e26872","DOI":"10.1371\/journal.pone.0026872","article-title":"Does speciation between Arabidopsis halleri and Arabidopsis lyrata coincide with major changes in a molecular target of adaptation?","volume":"6","author":"Roux","year":"2011","journal-title":"PLoS One"},{"key":"key\n\t\t\t\t20170413074108_mst066-B89","doi-asserted-by":"crossref","first-page":"435","DOI":"10.1093\/molbev\/mss246","article-title":"Recent and ancient signature of balancing selection around the S-locus in Arabidopsis halleri and A. lyrata","volume":"30","author":"Roux","year":"2012","journal-title":"Mol Biol Evol."},{"issue":"7","key":"key\n\t\t\t\t20170413074108_mst066-B90","doi-asserted-by":"crossref","first-page":"1611","DOI":"10.1007\/s00227-012-1898-5","article-title":"Field identification of \u201ctypes\u201d A and B of the ascidian Ciona intestinalis in a region of sympatry","volume":"159","author":"Sato","year":"2012","journal-title":"Marine Biol."},{"issue":"1","key":"key\n\t\t\t\t20170413074108_mst066-B91","doi-asserted-by":"crossref","first-page":"63","DOI":"10.1017\/S0016672300004547","article-title":"The effect of hitch-hiking on genes linked to a balanced polymorphism in a subdivided population","volume":"76","author":"Schierup","year":"2000","journal-title":"Genet Res."},{"issue":"7","key":"key\n\t\t\t\t20170413074108_mst066-B92","doi-asserted-by":"crossref","first-page":"1851","DOI":"10.1093\/molbev\/mss061","article-title":"Resequencing data provide no evidence for a human bottleneck in Africa during the penultimate glacial period","volume":"29","author":"Sj\u00f6din","year":"2012","journal-title":"Mol Biol Evol."},{"key":"key\n\t\t\t\t20170413074108_mst066-B93","doi-asserted-by":"crossref","first-page":"561","DOI":"10.1146\/annurev.arplant.043008.092039","article-title":"The role of hybridization in plant speciation","volume":"60","author":"Soltis","year":"2009","journal-title":"Annu Rev Plant Biol."},{"issue":"15","key":"key\n\t\t\t\t20170413074108_mst066-B94","doi-asserted-by":"crossref","first-page":"1296","DOI":"10.1016\/j.cub.2011.06.043","article-title":"Adaptive introgression of anticoagulant rodent poison resistance by hybridization between old world mice","volume":"21","author":"Song","year":"2011","journal-title":"Curr Biol."},{"issue":"7","key":"key\n\t\t\t\t20170413074108_mst066-B95","doi-asserted-by":"crossref","first-page":"1721","DOI":"10.1093\/molbev\/mss024","article-title":"Coalescent-based analysis distinguishes between allo- and autopolyploid origin in Shepherd\u2019s Purse (Capsella bursa-pastoris)","volume":"29","author":"St Onge","year":"2012","journal-title":"Mol Biol Evol."},{"issue":"1","key":"key\n\t\t\t\t20170413074108_mst066-B96","doi-asserted-by":"crossref","first-page":"205","DOI":"10.1534\/genetics.108.094904","article-title":"The impact of sampling schemes on the site frequency spectrum in nonequilibrium subdivided populations","volume":"182","author":"St\u00e4dler","year":"2009","journal-title":"Genetics"},{"issue":"7","key":"key\n\t\t\t\t20170413074108_mst066-B97","doi-asserted-by":"crossref","first-page":"e1002820","DOI":"10.1371\/journal.pgen.1002820","article-title":"Large-scale introgression shapes the evolution of the mating-type chromosomes of the filamentous ascomycete Neurospora tetrasperma","volume":"8","author":"Sun","year":"2012","journal-title":"PLoS Genet."},{"issue":"5","key":"key\n\t\t\t\t20170413074108_mst066-B98","doi-asserted-by":"crossref","first-page":"627","DOI":"10.1007\/s00239-005-0009-3","article-title":"Genomic approaches reveal unexpected genetic divergence within Ciona intestinalis","volume":"61","author":"Suzuki","year":"2005","journal-title":"J Mol Evol."},{"issue":"2","key":"key\n\t\t\t\t20170413074108_mst066-B99","doi-asserted-by":"crossref","first-page":"437","DOI":"10.1093\/genetics\/105.2.437","article-title":"Evolutionary relationship of DNA sequences in finite populations","volume":"105","author":"Tajima","year":"1983","journal-title":"Genetics"},{"issue":"3","key":"key\n\t\t\t\t20170413074108_mst066-B100","doi-asserted-by":"crossref","first-page":"597","DOI":"10.1093\/genetics\/123.3.597","article-title":"The effect of change in population size on DNA polymorphism","volume":"123","author":"Tajima","year":"1989","journal-title":"Genetics"},{"issue":"4","key":"key\n\t\t\t\t20170413074108_mst066-B101","doi-asserted-by":"crossref","first-page":"1383","DOI":"10.1093\/genetics\/164.4.1383","article-title":"Genetic dissection of hybrid incompatibilities between Drosophila simulans and D. mauritiana. I. Differential accumulation of hybrid male sterility effects on the X and autosomes","volume":"164","author":"Tao","year":"2003","journal-title":"Genetics"},{"issue":"2","key":"key\n\t\t\t\t20170413074108_mst066-B102","doi-asserted-by":"crossref","first-page":"505","DOI":"10.1093\/genetics\/145.2.505","article-title":"Inferring coalescence times from DNA sequence data","volume":"145","author":"Tavar\u00e9","year":"1997","journal-title":"Genetics"},{"key":"key\n\t\t\t\t20170413074108_mst066-B103","doi-asserted-by":"crossref","DOI":"10.1002\/0470047356","volume-title":"Population genetics and microevolutionary theory","author":"Templeton","year":"2006"},{"issue":"8","key":"key\n\t\t\t\t20170413074108_mst066-B104","doi-asserted-by":"crossref","first-page":"740","DOI":"10.1093\/gbe\/evs054","article-title":"The population genomics of a fast evolver: high levels of diversity, functional constraint, and molecular adaptation in the tunicate Ciona intestinalis","volume":"4","author":"Tsagkogeorga","year":"2012","journal-title":"Genome Biol Evol."},{"key":"key\n\t\t\t\t20170413074108_mst066-B115","doi-asserted-by":"crossref","first-page":"389","DOI":"10.1093\/genetics\/140.1.389","article-title":"The dominance theory of Haldane's rule","volume":"140","author":"Turelli","year":"1995","journal-title":"Genetics"},{"key":"key\n\t\t\t\t20170413074108_mst066-B116","doi-asserted-by":"crossref","first-page":"1663","DOI":"10.1093\/genetics\/154.4.1663","article-title":"Dominance, epistasis and the genetics of postzygotic isolation","volume":"154","author":"Turelli","year":"2000","journal-title":"Genetics"},{"issue":"9","key":"key\n\t\t\t\t20170413074108_mst066-B105","doi-asserted-by":"crossref","first-page":"e285","DOI":"10.1371\/journal.pbio.0030285","article-title":"Genomic islands of speciation in Anopheles gambiae","volume":"3","author":"Turner","year":"2005","journal-title":"PLoS Biol."},{"key":"key\n\t\t\t\t20170413074108_mst066-B106","doi-asserted-by":"crossref","first-page":"9939","DOI":"10.1073\/pnas.0901397106","article-title":"Natural selection in action during speciation","volume":"106","author":"Via","year":"2009","journal-title":"Proc Natl Acad Sci U S A."},{"issue":"3","key":"key\n\t\t\t\t20170413074108_mst066-B107","doi-asserted-by":"crossref","first-page":"847","DOI":"10.1093\/genetics\/145.3.847","article-title":"Estimating ancestral population parameters","volume":"145","author":"Wakeley","year":"1997","journal-title":"Genetics"},{"issue":"2","key":"key\n\t\t\t\t20170413074108_mst066-B108","doi-asserted-by":"crossref","first-page":"256","DOI":"10.1016\/0040-5809(75)90020-9","article-title":"On the number of segregating sites in genetical models without recombination","volume":"7","author":"Watterson","year":"1975","journal-title":"Theor Popul Biol."},{"issue":"7","key":"key\n\t\t\t\t20170413074108_mst066-B109","first-page":"2097","article-title":"A role for nonadaptive processes in plant genome size evolution?","volume":"64","author":"Whitney","year":"2010","journal-title":"Evolution"},{"issue":"6","key":"key\n\t\t\t\t20170413074108_mst066-B110","doi-asserted-by":"crossref","first-page":"794","DOI":"10.1086\/504606","article-title":"Adaptive introgression of herbivore resistance traits in the weedy sunflower Helianthus annuus","volume":"167","author":"Whitney","year":"2006","journal-title":"Am Nat."},{"issue":"2","key":"key\n\t\t\t\t20170413074108_mst066-B111","doi-asserted-by":"crossref","first-page":"297","DOI":"10.1093\/molbev\/msi017","article-title":"Divergence population genetics of chimpanzees","volume":"22","author":"Won","year":"2005","journal-title":"Mol Biol Evol."},{"issue":"6","key":"key\n\t\t\t\t20170413074108_mst066-B112","doi-asserted-by":"crossref","first-page":"851","DOI":"10.1046\/j.1420-9101.2001.00335.x","article-title":"The genic view of the process of speciation","volume":"14","author":"Wu","year":"2001","journal-title":"J Evol Biol."},{"issue":"21","key":"key\n\t\t\t\t20170413074108_mst066-B113","doi-asserted-by":"crossref","first-page":"4678","DOI":"10.1111\/j.1365-294X.2010.04837.x","article-title":"Invasion genetics of the Ciona intestinalis species complex: from regional endemism to global homogeneity","volume":"19","author":"Zhan","year":"2010","journal-title":"Mol Ecol."}],"container-title":["Molecular Biology and Evolution"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/mbe\/article-pdf\/30\/7\/1574\/13174226\/mst066.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,5,8]],"date-time":"2024-05-08T11:52:29Z","timestamp":1715169149000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/mbe\/article-lookup\/doi\/10.1093\/molbev\/mst066"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013,5,11]]},"references-count":116,"journal-issue":{"issue":"7","published-online":{"date-parts":[[2013,5,11]]},"published-print":{"date-parts":[[2013,7]]}},"URL":"https:\/\/doi.org\/10.1093\/molbev\/mst066","relation":{},"ISSN":["1537-1719","0737-4038"],"issn-type":[{"value":"1537-1719","type":"electronic"},{"value":"0737-4038","type":"print"}],"subject":[],"published":{"date-parts":[[2013,5,11]]}}}