{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,7]],"date-time":"2026-10-07T15:23:12Z","timestamp":1791386592170,"version":"4.3.3"},"reference-count":108,"publisher":"Oxford University Press (OUP)","issue":"6","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Mol Biol Evol"],"published-print":{"date-parts":[[2016,6]]},"DOI":"10.1093\/molbev\/msw020","type":"journal-article","created":{"date-parts":[[2016,2,15]],"date-time":"2016-02-15T01:19:04Z","timestamp":1455499144000},"page":"1419-1434","source":"Crossref","is-referenced-by-count":98,"title":["Mechanisms Underlying Adaptation to Life in Hydrogen Sulfide\u2013Rich Environments"],"prefix":"10.1093","volume":"33","author":[{"given":"Joanna L.","family":"Kelley","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lenin","family":"Arias-Rodriguez","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Dorrelyn","family":"Patacsil Martin","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Muh-Ching","family":"Yee","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Carlos D.","family":"Bustamante","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Michael","family":"Tobler","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2016,2,9]]},"reference":[{"key":"2016051700523135000_33.6.1419.1","doi-asserted-by":"publisher","DOI":"10.1007\/BF00002329"},{"key":"2016051700523135000_33.6.1419.2","first-page":"275","article-title":"Descripci\u00f3n de una nueva especie de Mollienisia capturada en Ba\u00f1os del Azufre, Tabasco (Pisces, Poeciliidae)","volume":"5","author":"Alvarez del Villar","year":"1948","journal-title":"An Esc Nac Cienc Biol"},{"key":"2016051700523135000_33.6.1419.3","doi-asserted-by":"publisher","DOI":"10.1016\/0166-445X(92)90015-F"},{"key":"2016051700523135000_33.6.1419.4","doi-asserted-by":"publisher","DOI":"10.1007\/BF00296642"},{"key":"2016051700523135000_33.6.1419.5","doi-asserted-by":"publisher","DOI":"10.3109\/10408448409029321"},{"key":"2016051700523135000_33.6.1419.6","doi-asserted-by":"crossref","unstructured":"Bell EM. 2012. Life at extremes: environments, organisms and strategies for survival. Oxfordshire (UK): CABI.","DOI":"10.1079\/9781845938147.0000"},{"key":"2016051700523135000_33.6.1419.7","doi-asserted-by":"crossref","first-page":"289","DOI":"10.1111\/j.2517-6161.1995.tb02031.x","article-title":"Controlling the false discovery rate: a practical and powerful approach to multiple testing","volume":"57","author":"Benjamini","year":"1995","journal-title":"J R Stat Soc B"},{"key":"2016051700523135000_33.6.1419.8","doi-asserted-by":"publisher","DOI":"10.1139\/z95-086"},{"key":"2016051700523135000_33.6.1419.9","first-page":"337","article-title":"The biology of hydrothermal vent animals: physiology, biochemistry, and autotrophic symbioses","volume":"30","author":"Childress","year":"1992","journal-title":"Oceanogr Mar Biol Ann Rev"},{"key":"2016051700523135000_33.6.1419.10","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pntd.0002905"},{"key":"2016051700523135000_33.6.1419.11","doi-asserted-by":"publisher","DOI":"10.1007\/s10863-008-9166-6"},{"key":"2016051700523135000_33.6.1419.12","doi-asserted-by":"publisher","DOI":"10.1038\/ng.889"},{"key":"2016051700523135000_33.6.1419.13","doi-asserted-by":"publisher","DOI":"10.1016\/0305-0491(81)90388-6"},{"key":"2016051700523135000_33.6.1419.14","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-10-48"},{"key":"2016051700523135000_33.6.1419.15","doi-asserted-by":"publisher","DOI":"10.1016\/j.tox.2004.05.020"},{"key":"2016051700523135000_33.6.1419.16","doi-asserted-by":"crossref","unstructured":"Evans DH Claiborne JB. 2006. The physiology of fishes. Boca Raton (FL): Taylor & Francis.","DOI":"10.1201\/9781420058093"},{"key":"2016051700523135000_33.6.1419.17","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-294X.2011.05276.x"},{"key":"2016051700523135000_33.6.1419.18","doi-asserted-by":"publisher","DOI":"10.1146\/annurev.bi.63.070194.002021"},{"key":"2016051700523135000_33.6.1419.19","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkh036"},{"key":"2016051700523135000_33.6.1419.20","doi-asserted-by":"publisher","DOI":"10.1038\/nature15256"},{"key":"2016051700523135000_33.6.1419.21","doi-asserted-by":"publisher","DOI":"10.1074\/jbc.272.30.19088"},{"key":"2016051700523135000_33.6.1419.22","doi-asserted-by":"publisher","DOI":"10.1096\/fj.06-7407com"},{"key":"2016051700523135000_33.6.1419.23","doi-asserted-by":"publisher","DOI":"10.3390\/d6030597"},{"key":"2016051700523135000_33.6.1419.24","doi-asserted-by":"publisher","DOI":"10.1152\/physrev.00019.2012"},{"key":"2016051700523135000_33.6.1419.25","doi-asserted-by":"publisher","DOI":"10.1146\/annurev.bi.54.070185.005055"},{"key":"2016051700523135000_33.6.1419.26","doi-asserted-by":"publisher","DOI":"10.1111\/j.1742-4658.2008.06482.x"},{"key":"2016051700523135000_33.6.1419.27","doi-asserted-by":"publisher","DOI":"10.1111\/j.1558-5646.2007.00105.x"},{"key":"2016051700523135000_33.6.1419.28","doi-asserted-by":"publisher","DOI":"10.1126\/science.1126121"},{"key":"2016051700523135000_33.6.1419.29","doi-asserted-by":"publisher","DOI":"10.1089\/ars.2005.7.768"},{"key":"2016051700523135000_33.6.1419.30","doi-asserted-by":"publisher","DOI":"10.1021\/bi300778t"},{"key":"2016051700523135000_33.6.1419.31","doi-asserted-by":"publisher","DOI":"10.1146\/annurev-nutr-071813-105654"},{"key":"2016051700523135000_33.6.1419.32","doi-asserted-by":"publisher","DOI":"10.1111\/j.1558-5646.2011.01440.x"},{"key":"2016051700523135000_33.6.1419.33","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkr988"},{"key":"2016051700523135000_33.6.1419.34","doi-asserted-by":"publisher","DOI":"10.1007\/s00239-015-9696-6"},{"key":"2016051700523135000_33.6.1419.35","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2164-13-652"},{"key":"2016051700523135000_33.6.1419.36","doi-asserted-by":"crossref","first-page":"4611","DOI":"10.1038\/ncomms5611","article-title":"Insights into evolution of the small genome of the Antarctic midge","volume":"5","author":"Kelley","year":"2014","journal-title":"Nat Commun"},{"key":"2016051700523135000_33.6.1419.37","first-page":"71","article-title":"Oxidative stress and thioredoxin system","volume":"27","author":"Koharyova","year":"2008","journal-title":"Gen Physiol Biophys"},{"key":"2016051700523135000_33.6.1419.38","unstructured":"Krueger F. 2014. Trim Galore! version 0.3.7. Available from: http:\/\/www.bioinformatics.babraham.ac.uk\/projects\/trim_galore\/."},{"key":"2016051700523135000_33.6.1419.39","doi-asserted-by":"publisher","DOI":"10.1130\/G21295.1"},{"key":"2016051700523135000_33.6.1419.40","doi-asserted-by":"publisher","DOI":"10.1016\/j.bbabio.2010.04.004"},{"key":"2016051700523135000_33.6.1419.41","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-9-559"},{"key":"2016051700523135000_33.6.1419.42","doi-asserted-by":"publisher","DOI":"10.1038\/ng1427"},{"key":"2016051700523135000_33.6.1419.43","doi-asserted-by":"publisher","DOI":"10.1016\/j.tibs.2008.01.001"},{"key":"2016051700523135000_33.6.1419.44","first-page":"1","article-title":"Ecology of cold seep sediments: interactions of fauna with flow, chemistry and microbes","volume":"43","author":"Levin","year":"2005","journal-title":"Oceanogr Mar Biol Ann Rev"},{"key":"2016051700523135000_33.6.1419.45","doi-asserted-by":"publisher","DOI":"10.1172\/JCI7712"},{"key":"2016051700523135000_33.6.1419.46","doi-asserted-by":"publisher","DOI":"10.1016\/j.tips.2007.11.003"},{"key":"2016051700523135000_33.6.1419.47","doi-asserted-by":"publisher","DOI":"10.1146\/annurev-pharmtox-010510-100505"},{"key":"2016051700523135000_33.6.1419.48","doi-asserted-by":"crossref","first-page":"229","DOI":"10.1016\/j.aquatox.2015.11.021","article-title":"Sulfide exposure results in enhanced sqr transcription through upregulating the expression and activation of HSF1 in echiuran worm Urechis unicinctus.","volume":"170","author":"Liu","year":"2015","journal-title":"Aquat Toxicol"},{"key":"2016051700523135000_33.6.1419.49","doi-asserted-by":"publisher","DOI":"10.1111\/j.1558-5646.2011.01289.x"},{"key":"2016051700523135000_33.6.1419.50","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-014-0550-8"},{"key":"2016051700523135000_33.6.1419.51","doi-asserted-by":"publisher","DOI":"10.1101\/gr.111120.110"},{"key":"2016051700523135000_33.6.1419.52","doi-asserted-by":"publisher","DOI":"10.1007\/s10126-011-9408-1"},{"key":"2016051700523135000_33.6.1419.53","doi-asserted-by":"publisher","DOI":"10.1186\/s12864-015-1838-0"},{"key":"2016051700523135000_33.6.1419.54","doi-asserted-by":"publisher","DOI":"10.1089\/ars.2011.4186"},{"key":"2016051700523135000_33.6.1419.55","doi-asserted-by":"crossref","first-page":"601","DOI":"10.1096\/fj.12-216507","article-title":"Intramitochondrial hydrogen sulfide production by 3-mercaptopyruvate sulfurtransferase maintains mitochondrial electron flow and supports cellular bioenergetics","volume":"27","author":"M\u00f3dis","year":"2012","journal-title":"FASEB J"},{"key":"2016051700523135000_33.6.1419.56","doi-asserted-by":"publisher","DOI":"10.1038\/nrmicro1892"},{"key":"2016051700523135000_33.6.1419.57","doi-asserted-by":"publisher","DOI":"10.1017\/S0954579412000818"},{"key":"2016051700523135000_33.6.1419.58","doi-asserted-by":"publisher","DOI":"10.1093\/gbe\/evr052"},{"key":"2016051700523135000_33.6.1419.59","doi-asserted-by":"publisher","DOI":"10.1152\/ajpregu.00045.2011"},{"key":"2016051700523135000_33.6.1419.60","doi-asserted-by":"publisher","DOI":"10.1152\/physiol.00024.2015"},{"key":"2016051700523135000_33.6.1419.61","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.2133733100"},{"key":"2016051700523135000_33.6.1419.62","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0071069"},{"key":"2016051700523135000_33.6.1419.63","doi-asserted-by":"publisher","DOI":"10.1038\/nrm3391"},{"key":"2016051700523135000_33.6.1419.64","doi-asserted-by":"crossref","first-page":"3873","DOI":"10.1038\/ncomms4873","article-title":"Parallel evolution of cox genes in H2S-tolerant fish as key adaptation to a toxic environment","volume":"5","author":"Pfenninger","year":"2014","journal-title":"Nat Commun"},{"key":"2016051700523135000_33.6.1419.65","doi-asserted-by":"publisher","DOI":"10.1111\/mec.13397"},{"key":"2016051700523135000_33.6.1419.66","doi-asserted-by":"publisher","DOI":"10.1111\/evo.12133"},{"key":"2016051700523135000_33.6.1419.67","doi-asserted-by":"publisher","DOI":"10.1007\/s00114-010-0691-x"},{"key":"2016051700523135000_33.6.1419.68","doi-asserted-by":"publisher","DOI":"10.1007\/BF00321153"},{"key":"2016051700523135000_33.6.1419.69","doi-asserted-by":"crossref","first-page":"109","DOI":"10.1146\/annurev.pa.32.040192.000545","article-title":"Toxicology of hydrogen sulfide","volume":"1992","author":"Reiffenstein","year":"1992","journal-title":"Ann Rev Pharmacol Toxicol"},{"key":"2016051700523135000_33.6.1419.70","doi-asserted-by":"crossref","unstructured":"Richards JG. 2009. Metabolic and molecular responses of fish to hypoxia. In: Richards JG Farrell AP Brauner CJ , editors. Fish physiology: hypoxia. New York: Academic Press. p. 443\u2013485.","DOI":"10.1016\/S1546-5098(08)00010-1"},{"key":"2016051700523135000_33.6.1419.71","doi-asserted-by":"publisher","DOI":"10.1111\/ele.12209"},{"key":"2016051700523135000_33.6.1419.72","doi-asserted-by":"crossref","unstructured":"Riesch R Tobler M Plath M. 2015. Hydrogen sulfide-toxic habitats. In: Riesch R Tobler M Plath M , editors. Extremophile fishes: ecology, evolution, and physiology of teleosts in extreme environments. Heidelberg (Germany): Springer. p. 137\u2013159.","DOI":"10.1007\/978-3-319-13362-1_7"},{"key":"2016051700523135000_33.6.1419.73","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.2251"},{"key":"2016051700523135000_33.6.1419.74","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp616"},{"key":"2016051700523135000_33.6.1419.75","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2010-11-3-r25"},{"key":"2016051700523135000_33.6.1419.76","doi-asserted-by":"publisher","DOI":"10.1007\/s00253-011-3819-9"},{"key":"2016051700523135000_33.6.1419.77","unstructured":"Rosales LL. 2012. Investigation of karst brackish-sulfidic springs and their role in the hydrogeology, subsurface water-rock interactions, and speleogenesis at northern Sierra de Chiapas, Mexico [dissertation]. [Socorro (NM)]: New Mexico Institute of Mining and Technology."},{"key":"2016051700523135000_33.6.1419.78","doi-asserted-by":"publisher","DOI":"10.1126\/science.283.5407.1488"},{"key":"2016051700523135000_33.6.1419.79","doi-asserted-by":"publisher","DOI":"10.1038\/ng.2604"},{"key":"2016051700523135000_33.6.1419.80","doi-asserted-by":"crossref","unstructured":"Shahak Y Hauska G. 2008. Sulfide oxidation from cyanobacteria to humans: sulfide-quinone oxidoreductase (SQR). In: Hell R Dahl C Knaff DB Leustek T , editors. Advances in photosynthesis and respiration. Heidelberg (Germany): Springer. p. 319\u2013335.","DOI":"10.1007\/978-1-4020-6863-8_16"},{"key":"2016051700523135000_33.6.1419.81","doi-asserted-by":"publisher","DOI":"10.1016\/S1096-4959(02)00022-2"},{"key":"2016051700523135000_33.6.1419.82","doi-asserted-by":"publisher","DOI":"10.1016\/j.jembe.2013.10.006"},{"key":"2016051700523135000_33.6.1419.83","doi-asserted-by":"publisher","DOI":"10.1146\/annurev.nutr.24.012003.132418"},{"key":"2016051700523135000_33.6.1419.84","doi-asserted-by":"publisher","DOI":"10.1007\/s10545-009-9006-9"},{"key":"2016051700523135000_33.6.1419.85","doi-asserted-by":"crossref","unstructured":"Storey KB Storey JM. 2005. Biochemical adaptation to extreme environments. In: Walz W , editor. Integrative physiology in the proteomics and post-genomics age. Totowa (NJ): Humana Press. p. 169\u2013200.","DOI":"10.1385\/1-59259-925-7:169"},{"key":"2016051700523135000_33.6.1419.86","doi-asserted-by":"publisher","DOI":"10.1111\/j.1558-5646.2010.01044.x"},{"key":"2016051700523135000_33.6.1419.87","doi-asserted-by":"publisher","DOI":"10.1038\/nrd2425"},{"key":"2016051700523135000_33.6.1419.88","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1218661109"},{"key":"2016051700523135000_33.6.1419.89","doi-asserted-by":"publisher","DOI":"10.1007\/s11692-011-9129-4"},{"key":"2016051700523135000_33.6.1419.90","doi-asserted-by":"publisher","DOI":"10.1016\/j.cbpa.2014.04.012"},{"key":"2016051700523135000_33.6.1419.91","doi-asserted-by":"publisher","DOI":"10.1111\/j.1558-5646.2011.01298.x"},{"key":"2016051700523135000_33.6.1419.92","unstructured":"Tobler M Plath M. 2011. Living in extreme habitats. In: Evans J Pilastro A Schlupp I , editors. Ecology and evolution of poeciliid fishes. Chicago (IL): University of Chicago Press. p. 120\u2013127."},{"key":"2016051700523135000_33.6.1419.93","doi-asserted-by":"crossref","unstructured":"Tobler M Riesch R Plath M. 2015. Extremophile fishes: an integrative synthesis. In: Riesch R Tobler M Plath M , editors. Extremophile fishes: ecology, evolution, and physiology of teleosts in extreme environments. Heidelberg (Germany): Springer. p. 279\u2013296.","DOI":"10.1007\/978-3-319-13362-1_12"},{"key":"2016051700523135000_33.6.1419.94","doi-asserted-by":"publisher","DOI":"10.1007\/s00792-006-0531-2"},{"key":"2016051700523135000_33.6.1419.95","doi-asserted-by":"publisher","DOI":"10.1038\/nbt.1621"},{"key":"2016051700523135000_33.6.1419.96","doi-asserted-by":"crossref","unstructured":"Van Dover CL. 2000. The ecology of deep-sea hydrothermal vents. Princeton (NJ): Princeton University Press.","DOI":"10.1515\/9780691239477"},{"key":"2016051700523135000_33.6.1419.97","doi-asserted-by":"publisher","DOI":"10.1016\/S0981-9428(00)80093-5"},{"key":"2016051700523135000_33.6.1419.98","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1080\/00785326.1991.10429703","article-title":"Sulfide tomerance: physiological mechanisms and ecological implications","volume":"34","author":"Vismann","year":"1991","journal-title":"Ophelia"},{"key":"2016051700523135000_33.6.1419.99","doi-asserted-by":"crossref","first-page":"83","DOI":"10.1242\/jeb.200.1.83","article-title":"Sulfide oxidation and oxidative phosphorylation in the mitochondria of the lugworm Arenicola marina.","volume":"200","author":"V\u00f6lkel","year":"1997","journal-title":"J Exp Biol"},{"key":"2016051700523135000_33.6.1419.100","doi-asserted-by":"publisher","DOI":"10.1002\/(SICI)1097-010X(19991215)285:4<326::AID-JEZ3>3.0.CO;2-T"},{"key":"2016051700523135000_33.6.1419.101","first-page":"884","article-title":"Comparative genomics in ecological physiology: toward a more nuanced understanding of acclimation and adaptation","volume":"215","author":"Whitehead","year":"2012","journal-title":"J Exp Zool"},{"key":"2016051700523135000_33.6.1419.102","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.0507648103"},{"key":"2016051700523135000_33.6.1419.103","doi-asserted-by":"publisher","DOI":"10.1042\/CS20110267"},{"key":"2016051700523135000_33.6.1419.104","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msv177"},{"key":"2016051700523135000_33.6.1419.105","doi-asserted-by":"publisher","DOI":"10.1111\/j.1095-8312.2003.00230.x"},{"key":"2016051700523135000_33.6.1419.106","doi-asserted-by":"publisher","DOI":"10.1038\/nrg2063"},{"key":"2016051700523135000_33.6.1419.107","doi-asserted-by":"crossref","first-page":"140013","DOI":"10.1038\/sdata.2014.13","article-title":"Comprehensive RNA-Seq transcriptomic profiling across 11 organs, 4 ages, and 2 sexes of Fischer 344 rats","volume":"1","author":"Yu","year":"2014","journal-title":"Sci Data"},{"key":"2016051700523135000_33.6.1419.108","doi-asserted-by":"crossref","first-page":"1456","DOI":"10.1038\/srep01456","article-title":"Bed bugs evolved unique adaptive strategy to resist pyrethroid insecticides","volume":"3","author":"Zhu","year":"2013","journal-title":"Sci Rep"}],"container-title":["Molecular Biology and Evolution"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/mbe\/article-pdf\/33\/6\/1419\/17471144\/msw020.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,6,14]],"date-time":"2024-06-14T10:40:40Z","timestamp":1718361640000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/mbe\/article-lookup\/doi\/10.1093\/molbev\/msw020"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016,2,9]]},"references-count":108,"journal-issue":{"issue":"6","published-online":{"date-parts":[[2016,5,16]]},"published-print":{"date-parts":[[2016,6]]}},"alternative-id":["10.1093\/molbev\/msw020"],"URL":"https:\/\/doi.org\/10.1093\/molbev\/msw020","relation":{},"ISSN":["0737-4038","1537-1719"],"issn-type":[{"value":"0737-4038","type":"print"},{"value":"1537-1719","type":"electronic"}],"subject":[],"published":{"date-parts":[[2016,2,9]]}}}