{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,26]],"date-time":"2026-09-26T05:13:01Z","timestamp":1790399581711,"version":"4.1.0"},"reference-count":89,"publisher":"Oxford University Press (OUP)","issue":"5","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2017,5]]},"DOI":"10.1093\/molbev\/msx064","type":"journal-article","created":{"date-parts":[[2017,1,30]],"date-time":"2017-01-30T13:24:03Z","timestamp":1485782643000},"page":"1140-1154","source":"Crossref","is-referenced-by-count":62,"title":["Purifying and Positive Selection Influence Patterns of Gene Loss and Gene Expression in the Evolution of a Plant Sex Chromosome System"],"prefix":"10.1093","volume":"34","author":[{"given":"Daisy","family":"Crowson","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Spencer C.H.","family":"Barrett","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Stephen I.","family":"Wright","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2017,1,31]]},"reference":[{"key":"key\n\t\t\t\t20170418142459_msx064-B1","doi-asserted-by":"crossref","first-page":"646","DOI":"10.1126\/science.1257225","article-title":"A Y-chromosome-encoded small RNA acts as a sex determinant in persimmons","volume":"346","year":"2014","journal-title":"Science"},{"key":"key\n\t\t\t\t20170418142459_msx064-B2","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool","volume":"215","year":"1990","journal-title":"J Mol Biol"},{"key":"key\n\t\t\t\t20170418142459_msx064-B3","first-page":"166","article-title":"HTSeq \u2013 a Python framework to work with high-throughput sequencing data","volume":"21","year":"2015","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170418142459_msx064-B4","doi-asserted-by":"crossref","first-page":"518","DOI":"10.1038\/ng1347","article-title":"Evidence that positive selection drives Y-chromosome degeneration in Drosophila miranda","volume":"36","year":"2004","journal-title":"Nat Genet"},{"key":"key\n\t\t\t\t20170418142459_msx064-B5","doi-asserted-by":"crossref","first-page":"1513","DOI":"10.1534\/genetics.107.084012","article-title":"The temporal dynamics of processes underlying Y chromosome degeneration","volume":"179","year":"2008","journal-title":"Genetics"},{"key":"key\n\t\t\t\t20170418142459_msx064-B6","doi-asserted-by":"crossref","first-page":"113","DOI":"10.1038\/nrg3366","article-title":"Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration","volume":"14","year":"2013","journal-title":"Nat Rev Genet"},{"key":"key\n\t\t\t\t20170418142459_msx064-B7","doi-asserted-by":"crossref","first-page":"1403","DOI":"10.1111\/j.0014-3820.2004.tb01722.x","article-title":"Adaptive evolution of asexual populations under Muller\u2019s ratchet","volume":"58","year":"2004","journal-title":"Evolution"},{"key":"key\n\t\t\t\t20170418142459_msx064-B8","doi-asserted-by":"crossref","first-page":"350","DOI":"10.1016\/j.tig.2011.05.005","article-title":"Are all sex chromosomes created equal?","volume":"27","year":"2011","journal-title":"Trends Genet"},{"key":"key\n\t\t\t\t20170418142459_msx064-B9","doi-asserted-by":"crossref","first-page":"494","DOI":"10.1038\/nature13206","article-title":"Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators","volume":"508","year":"2014","journal-title":"Nature"},{"key":"key\n\t\t\t\t20170418142459_msx064-B10","doi-asserted-by":"crossref","first-page":"1234","DOI":"10.1016\/j.cub.2015.03.015","article-title":"Gene loss from a plant sex chromosome system","volume":"25","year":"2015","journal-title":"Curr Biol"},{"key":"key\n\t\t\t\t20170418142459_msx064-B11","doi-asserted-by":"crossref","first-page":"171","DOI":"10.1007\/s00497-007-0053-9","article-title":"Male gametophyte development and two different DNA classes of pollen grains in Rumex acetosa L., a plant with an XX\/XY1Y2 sex chromosome system and a female-biased sex ratio","volume":"20","year":"2007","journal-title":"Sex Plant Reprod"},{"key":"key\n\t\t\t\t20170418142459_msx064-B12","doi-asserted-by":"crossref","first-page":"1168","DOI":"10.1104\/pp.108.125229","article-title":"Comparative transcriptomics of Arabidopsis sperm cells","volume":"148","year":"2008","journal-title":"Plant Physiol"},{"key":"key\n\t\t\t\t20170418142459_msx064-B13","volume-title":"Evolution of sex determining mechanisms","year":"1983"},{"key":"key\n\t\t\t\t20170418142459_msx064-B14","doi-asserted-by":"crossref","first-page":"270","DOI":"10.1016\/j.tig.2009.04.002","article-title":"Origin and evolution of Y chromosomes: Drosophila tales","volume":"25","year":"2009","journal-title":"Trends Genet"},{"key":"key\n\t\t\t\t20170418142459_msx064-B15","doi-asserted-by":"crossref","first-page":"5618","DOI":"10.1073\/pnas.75.11.5618","article-title":"Model for evolution of Y chromosomes and dosage compensation","volume":"75","year":"1978","journal-title":"Proc Natl Acad Sci USA"},{"key":"key\n\t\t\t\t20170418142459_msx064-B16","doi-asserted-by":"crossref","first-page":"1563","DOI":"10.1098\/rstb.2000.0717","article-title":"The degeneration of Y chromosomes","volume":"355","year":"2000","journal-title":"Philos Trans R Soc Lond B"},{"key":"key\n\t\t\t\t20170418142459_msx064-B17","doi-asserted-by":"crossref","first-page":"113","DOI":"10.1086\/284701","article-title":"The relative rates of evolution of sex chromosomes and autosomes","volume":"130","year":"1987","journal-title":"Am Nat"},{"key":"key\n\t\t\t\t20170418142459_msx064-B18","doi-asserted-by":"crossref","first-page":"1289","DOI":"10.1093\/genetics\/134.4.1289","article-title":"The effect of deleterious mutations on neutral molecular variation","volume":"134","year":"1993","journal-title":"Genetics"},{"key":"key\n\t\t\t\t20170418142459_msx064-B19","doi-asserted-by":"crossref","first-page":"253","DOI":"10.1038\/ng.2890","article-title":"Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle","volume":"46","year":"2014","journal-title":"Nat Genet"},{"key":"key\n\t\t\t\t20170418142459_msx064-B20","doi-asserted-by":"crossref","first-page":"1475","DOI":"10.1016\/j.cub.2011.07.045","article-title":"Plant Y chromosome degeneration is retarded by haploid purifying selection","volume":"21","year":"2011","journal-title":"Curr Biol"},{"key":"key\n\t\t\t\t20170418142459_msx064-B21","doi-asserted-by":"crossref","first-page":"19","DOI":"10.1038\/sj.hdy.6801059","article-title":"The Hill\u2013Robertson effect: evolutionary consequences of weak selection and linkage in finite populations","volume":"100","year":"2008","journal-title":"Heredity"},{"key":"key\n\t\t\t\t20170418142459_msx064-B22","first-page":"1","article-title":"Bestimmung, Vererbung und Verteilung des Geschlechtes bei den h\u00f6heren Pflanzen","volume":"2","year":"1928","journal-title":"Vererbungswissenschaft"},{"key":"key\n\t\t\t\t20170418142459_msx064-B23","doi-asserted-by":"crossref","first-page":"825","DOI":"10.1007\/s10577-007-1166-6","article-title":"The evolution of sex chromosomes in the genus Rumex (Polygonaceae): identification of a new species with heteromorphic sex chromosomes","volume":"15","year":"2007","journal-title":"Chromosome Res"},{"key":"key\n\t\t\t\t20170418142459_msx064-B24","doi-asserted-by":"crossref","first-page":"491","DOI":"10.1038\/ng.806","article-title":"A framework for variation discovery and genotyping using next-generation DNA sequencing data","volume":"43","year":"2011","journal-title":"Nat Genet"},{"key":"key\n\t\t\t\t20170418142459_msx064-B25","doi-asserted-by":"crossref","first-page":"1792","DOI":"10.1093\/nar\/gkh340","article-title":"MUSCLE: multiple sequence alignment with high accuracy and high throughput","volume":"32","year":"2004","journal-title":"Nucl Acids Res"},{"key":"key\n\t\t\t\t20170418142459_msx064-B26","doi-asserted-by":"crossref","first-page":"40.","DOI":"10.1186\/1741-7007-5-40","article-title":"Faced with inequality: chicken do not have a general dosage compensation of sex-linked genes","volume":"5","year":"2007","journal-title":"BMC Biol"},{"key":"key\n\t\t\t\t20170418142459_msx064-B27","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1038\/ng1983","article-title":"X chromosome repression by localization of the C. elegans dosage compensation machinery to sites of transcription initiation","volume":"39","year":"2007","journal-title":"Nat Genet"},{"key":"key\n\t\t\t\t20170418142459_msx064-B28","first-page":"661","article-title":"Comparative analyses of sex-ratio variation in dioecious flowering plants","volume":"67","year":"2012","journal-title":"Evolution"},{"key":"key\n\t\t\t\t20170418142459_msx064-B29","doi-asserted-by":"crossref","first-page":"184","DOI":"10.1086\/663164","article-title":"The influence of pollination intensity on fertilization success, progeny sex ratio, and fitness in a wind-pollinated, dioecious plant","volume":"173","year":"2012","journal-title":"Int J Plant Sci"},{"key":"key\n\t\t\t\t20170418142459_msx064-B30","volume-title":"The genetical theory of natural selection","year":"1930"},{"key":"key\n\t\t\t\t20170418142459_msx064-B31","doi-asserted-by":"crossref","first-page":"3243","DOI":"10.1111\/mec.13126","article-title":"Recent Y chromosome divergence despite ancient origin of dioecy in poplars (Populus)","volume":"24","year":"2015","journal-title":"Mol Ecol"},{"key":"key\n\t\t\t\t20170418142459_msx064-B32","doi-asserted-by":"crossref","first-page":"24.","DOI":"10.1186\/1471-2229-12-24","article-title":"Comprehensive analysis of tobacco pollen transcriptome unveils common pathways in polar cell expansion and underlying heterochronic shift during spermatogenesis","volume":"12","year":"2012","journal-title":"BMC Plant Biol"},{"key":"key\n\t\t\t\t20170418142459_msx064-B33","doi-asserted-by":"crossref","first-page":"269","DOI":"10.1017\/S0016672300010156","article-title":"The effect of linkage on limits to artificial selection","volume":"8","year":"1966","journal-title":"Genet Res"},{"key":"key\n\t\t\t\t20170418142459_msx064-B34","doi-asserted-by":"crossref","first-page":"R85.","DOI":"10.1186\/gb-2004-5-11-r85","article-title":"Transcriptome analysis of haploid male gametophyte development in Arabidopsis","volume":"5","year":"2004","journal-title":"Genome Biol"},{"key":"key\n\t\t\t\t20170418142459_msx064-B35","doi-asserted-by":"crossref","first-page":"7713","DOI":"10.1073\/pnas.1319227111","article-title":"Genetic degeneration of old and young Y chromosomes in the flowering plant Rumex hastatulus","volume":"111","year":"2014","journal-title":"Proc Natl Acad Sci USA"},{"key":"key\n\t\t\t\t20170418142459_msx064-B36","doi-asserted-by":"crossref","first-page":"1915","DOI":"10.1111\/evo.12066","article-title":"Evolutionarily stable sex ratios and mutation load","volume":"67","year":"2013","journal-title":"Evolution"},{"key":"key\n\t\t\t\t20170418142459_msx064-B37","doi-asserted-by":"crossref","first-page":"44","DOI":"10.1038\/nprot.2008.211","article-title":"Systematic and integrative analysis of large gene lists using DAVID Bioinformatics Resources","volume":"4","year":"2009","journal-title":"Nat Protoc"},{"key":"key\n\t\t\t\t20170418142459_msx064-B38","first-page":"505","article-title":"The potential for sexually antagonistic polymorphism in different genome regions","volume":"66","year":"2011","journal-title":"Evolution"},{"key":"key\n\t\t\t\t20170418142459_msx064-B39","doi-asserted-by":"crossref","first-page":"e1001328.","DOI":"10.1371\/journal.pbio.1001328","article-title":"Mechanisms and evolutionary patterns of mammalian and avian dosage compensation","volume":"10","year":"2012","journal-title":"PLoS Biol"},{"key":"key\n\t\t\t\t20170418142459_msx064-B40","doi-asserted-by":"crossref","first-page":"339","DOI":"10.1534\/genetics.109.112789","article-title":"Muller\u2019s ratchet and the degeneration of the Drosophila miranda neo-Y chromosome","volume":"185","year":"2010","journal-title":"Genetics"},{"key":"key\n\t\t\t\t20170418142459_msx064-B41","doi-asserted-by":"crossref","first-page":"1329","DOI":"10.1093\/gbe\/evr103","article-title":"Nonrandom gene loss from the Drosophila miranda neo-Y chromosome","volume":"3","year":"2011","journal-title":"Genome Biol Evol"},{"key":"key\n\t\t\t\t20170418142459_msx064-B42","doi-asserted-by":"crossref","first-page":"e45519.","DOI":"10.1371\/journal.pone.0045519","article-title":"Expansion of microsatellites on evolutionary young Y chromosome","volume":"8","year":"2013","journal-title":"PLoS ONE"},{"key":"key\n\t\t\t\t20170418142459_msx064-B43","doi-asserted-by":"crossref","first-page":"1754","DOI":"10.1093\/bioinformatics\/btp324","article-title":"Fast and accurate short read alignment with Burrows\u2013Wheeler Transform","volume":"25","year":"2009","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170418142459_msx064-B44","doi-asserted-by":"crossref","first-page":"550.","DOI":"10.1186\/s13059-014-0550-8","article-title":"Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2","volume":"15","year":"2014","journal-title":"Genome Biol"},{"key":"key\n\t\t\t\t20170418142459_msx064-B45","doi-asserted-by":"crossref","first-page":"936","DOI":"10.1101\/gr.111120.110","article-title":"Stampy: a statistical algorithm for sensitive and fast mapping of illumina sequence reads","volume":"21","year":"2011","journal-title":"Genome Res"},{"key":"key\n\t\t\t\t20170418142459_msx064-B46","doi-asserted-by":"crossref","first-page":"591","DOI":"10.1093\/gbe\/evv008","article-title":"Partial dosage compensation in Strepsiptera, a sister group of beetles","volume":"7","year":"2015","journal-title":"Genome Biol Evol"},{"key":"key\n\t\t\t\t20170418142459_msx064-B47","doi-asserted-by":"crossref","first-page":"R28","DOI":"10.1186\/gb-2012-13-4-r28","article-title":"Mediation of Drosophila autosomal dosage effects and compensation by network interactions","volume":"13","year":"2012","journal-title":"Genome Biol"},{"key":"key\n\t\t\t\t20170418142459_msx064-B48","doi-asserted-by":"crossref","first-page":"677","DOI":"10.1016\/j.tig.2013.07.005","article-title":"Sex chromosome dosage compensation: definitely not for everyone","volume":"29","year":"2013","journal-title":"Trends Genet"},{"key":"key\n\t\t\t\t20170418142459_msx064-B49","doi-asserted-by":"crossref","first-page":"1297","DOI":"10.1101\/gr.107524.110","article-title":"The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data","volume":"20","year":"2010","journal-title":"Genome Res"},{"key":"key\n\t\t\t\t20170418142459_msx064-B50","doi-asserted-by":"crossref","first-page":"485","DOI":"10.1146\/annurev-arplant-042110-103914","article-title":"Sex chromosomes in land plants","volume":"62","year":"2011","journal-title":"Annu Rev Plant Biol"},{"key":"key\n\t\t\t\t20170418142459_msx064-B51","doi-asserted-by":"crossref","first-page":"2","DOI":"10.1016\/0027-5107(64)90047-8","article-title":"The relation of recombination to mutational advance","volume":"1","year":"1964","journal-title":"Mutat Res"},{"key":"key\n\t\t\t\t20170418142459_msx064-B52","doi-asserted-by":"crossref","first-page":"7720.","DOI":"10.1038\/ncomms8720","article-title":"Evolution of dosage compensation under sexual selection differs between X and Z chromosomes","volume":"6","year":"2015","journal-title":"Nat Commun"},{"key":"key\n\t\t\t\t20170418142459_msx064-B53","doi-asserted-by":"crossref","first-page":"e1001308.","DOI":"10.1371\/journal.pbio.1001308","article-title":"Rapid de novo evolution of X chromosome dosage compensation in Silene latifolia, a plant with young sex chromosomes","volume":"10","year":"2012","journal-title":"PLoS Biol"},{"key":"key\n\t\t\t\t20170418142459_msx064-B54","doi-asserted-by":"crossref","first-page":"1929","DOI":"10.1093\/molbev\/msi186","article-title":"The evolution of reproductive systems and sex-determining mechanisms within Rumex (Polygonaceae) inferred from nuclear and chloroplastidial sequence data","volume":"22","year":"2005","journal-title":"Mol Biol Evol"},{"key":"key\n\t\t\t\t20170418142459_msx064-B55","doi-asserted-by":"crossref","first-page":"1693","DOI":"10.1093\/genetics\/150.4.1693","article-title":"An adaptive hypothesis for the evolution of the Y chromosome","volume":"150","year":"1998","journal-title":"Genetics"},{"key":"key\n\t\t\t\t20170418142459_msx064-B56","doi-asserted-by":"crossref","first-page":"92","DOI":"10.1126\/science.1180677","article-title":"The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana","volume":"327","year":"2010","journal-title":"Science"},{"key":"key\n\t\t\t\t20170418142459_msx064-B57","doi-asserted-by":"crossref","first-page":"13021","DOI":"10.1073\/pnas.1508454112","article-title":"Rapid Y degeneration and dosage compensation in plant sex chromosomes","volume":"112","year":"2015","journal-title":"Proc Natl Acad Sci USA"},{"key":"key\n\t\t\t\t20170418142459_msx064-B58","doi-asserted-by":"crossref","first-page":"79","DOI":"10.1016\/0168-9452(91)90274-C","article-title":"Dosage sex-chromosome systems in plants","volume":"80","year":"1991","journal-title":"Plant Sci"},{"key":"key\n\t\t\t\t20170418142459_msx064-B59","doi-asserted-by":"crossref","first-page":"5346","DOI":"10.1073\/pnas.1116763109","article-title":"Mammalian X chromosome inactivation evolved as a dosage-compensation mechanism for dosage-sensitive genes on the X chromosome","volume":"109","year":"2012","journal-title":"Proc Natl Acad Sci USA"},{"key":"key\n\t\t\t\t20170418142459_msx064-B60","first-page":"709","article-title":"Chromosomal gene movements reflect the recent origin and biology of therian sex chromosomes","volume":"6","year":"2008","journal-title":"PLoS Biol"},{"key":"key\n\t\t\t\t20170418142459_msx064-B61","doi-asserted-by":"crossref","first-page":"253","DOI":"10.1139\/g10-115","article-title":"A satellite DNA evolutionary analysis in the North American endemic dioecious plant Rumex hastatulus (Polygonaceae)","volume":"54","year":"2011","journal-title":"Genome"},{"key":"key\n\t\t\t\t20170418142459_msx064-B62","doi-asserted-by":"crossref","first-page":"911","DOI":"10.2307\/2408899","article-title":"The accumulation of sexually antagonistic genes as a selective agent promoting the evolution of reduced recombination between primitive sex chromosomes","volume":"41","year":"1987","journal-title":"Evolution"},{"key":"key\n\t\t\t\t20170418142459_msx064-B63","doi-asserted-by":"crossref","first-page":"161","DOI":"10.1093\/genetics\/116.1.161","article-title":"Genetic hitchhiking and the evolution of reduced genetic activity of the Y sex chromosome","volume":"116","year":"1987","journal-title":"Genetics"},{"key":"key\n\t\t\t\t20170418142459_msx064-B64","doi-asserted-by":"crossref","first-page":"276","DOI":"10.1016\/S0168-9525(00)02024-2","article-title":"EMBOSS: the European molecular biology open software suite","volume":"16","year":"2000","journal-title":"Trends Genet"},{"key":"key\n\t\t\t\t20170418142459_msx064-B65","doi-asserted-by":"crossref","first-page":"299","DOI":"10.1016\/S0006-3207(03)00049-1","article-title":"Conservation of the critically endangered Rumex rothschildianus as implied from AFLP diversity","volume":"114","year":"2003","journal-title":"Biol Conserv"},{"key":"key\n\t\t\t\t20170418142459_msx064-B66","doi-asserted-by":"crossref","first-page":"1086","DOI":"10.1093\/bioinformatics\/bts094","article-title":"Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels","volume":"28","year":"2012","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170418142459_msx064-B67","doi-asserted-by":"crossref","first-page":"2612","DOI":"10.1093\/molbev\/msu203","article-title":"Positive and purifying selection on the Drosophila Y chromosome","volume":"31","year":"2014","journal-title":"Mol Biol Evol"},{"key":"key\n\t\t\t\t20170418142459_msx064-B68","first-page":"172","article-title":"Evolution of sex-determining mechanisms in Rumex","volume":"2","year":"1969","journal-title":"Chromosomes Today"},{"key":"key\n\t\t\t\t20170418142459_msx064-B69","doi-asserted-by":"crossref","first-page":"1312","DOI":"10.1093\/bioinformatics\/btu033","article-title":"RAxML Version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies","volume":"30","year":"2014","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170418142459_msx064-B70","first-page":"59","article-title":"Strong accumulation of chloroplast DNA in the Y chromosomes of Rumex acetosa and Silene latifolia","volume":"141","year":"2013","journal-title":"Cytogenet Genome Res"},{"key":"key\n\t\t\t\t20170418142459_msx064-B71","doi-asserted-by":"crossref","first-page":"769","DOI":"10.1093\/gbe\/evt049","article-title":"Contrasting patterns of transposable element and satellite distribution on sex chromosomes (XY1Y2) in the dioecious plant Rumex acetosa","volume":"5","year":"2013","journal-title":"Genome Biol Evol"},{"key":"key\n\t\t\t\t20170418142459_msx064-B72","doi-asserted-by":"crossref","first-page":"1207","DOI":"10.1111\/j.0014-3820.2006.tb01199.x","article-title":"Pollination intensity influences sex ratios in dioecious Rumex nivalis, a wind-pollinated plant","volume":"60","year":"2006","journal-title":"Evolution"},{"key":"key\n\t\t\t\t20170418142459_msx064-B73","doi-asserted-by":"crossref","first-page":"1555","DOI":"10.1093\/gbe\/evt114","article-title":"Transcriptome sequencing reveals the character of incomplete dosage compensation across multiple tissues in flycatchers","volume":"5","year":"2013","journal-title":"Genome Biol Evol"},{"key":"key\n\t\t\t\t20170418142459_msx064-B74","first-page":"1","article-title":"From FastQ data to high-confidence variant calls: the genome analysis toolkit best practices pipeline","volume":"43","year":"2013","journal-title":"Curr Protoc Bioinf"},{"key":"key\n\t\t\t\t20170418142459_msx064-B75","doi-asserted-by":"crossref","first-page":"524","DOI":"10.1101\/gr.183905.114","article-title":"Origin and domestication of papaya Yh chromosome","volume":"25","year":"2015","journal-title":"Genome Res"},{"key":"key\n\t\t\t\t20170418142459_msx064-B76","doi-asserted-by":"crossref","first-page":"965","DOI":"10.1101\/gr.7101908","article-title":"Bird-like sex chromosomes of platypus imply recent origin of mammal sex chromosomes","volume":"18","year":"2008","journal-title":"Genome Res"},{"key":"key\n\t\t\t\t20170418142459_msx064-B77","doi-asserted-by":"crossref","first-page":"585","DOI":"10.1007\/s10577-009-9053-y","article-title":"Progress and prospects toward our understanding of the evolution of dosage compensation","volume":"17","year":"2009","journal-title":"Chromosome Res"},{"key":"key\n\t\t\t\t20170418142459_msx064-B78","doi-asserted-by":"crossref","first-page":"e1002078.","DOI":"10.1371\/journal.pbio.1002078","article-title":"Numerous transitions of sex chromosomes in Diptera","volume":"13","year":"2015","journal-title":"PLoS Biol"},{"key":"key\n\t\t\t\t20170418142459_msx064-B79","doi-asserted-by":"crossref","first-page":"e1001643.","DOI":"10.1371\/journal.pbio.1001643","article-title":"Comparative sex chromosome genomics in snakes: differentiation, evolutionary strata, and lack of global dosage compensation","volume":"11","year":"2013","journal-title":"PLoS Biol"},{"key":"key\n\t\t\t\t20170418142459_msx064-B80","doi-asserted-by":"crossref","first-page":"2545","DOI":"10.1093\/gbe\/evv156","article-title":"Sex chromosome dosage compensation in Heliconius butterflies: global yet still incomplete?","volume":"7","year":"2015","journal-title":"Genome Biol Evol"},{"key":"key\n\t\t\t\t20170418142459_msx064-B81","doi-asserted-by":"crossref","first-page":"3537","DOI":"10.1093\/nar\/gkg609","article-title":"RevTrans \u2013 constructing alignments of coding DNA from aligned amino acid sequences","volume":"31","year":"2003","journal-title":"Nucl Acids Res"},{"key":"key\n\t\t\t\t20170418142459_msx064-B82","doi-asserted-by":"crossref","first-page":"1981","DOI":"10.1093\/molbev\/msv078","article-title":"Purifying selection maintains dosage-sensitive genes during degeneration of the threespine stickleback Y chromosome","volume":"32","year":"2015","journal-title":"Mol Biol Evol"},{"key":"key\n\t\t\t\t20170418142459_msx064-B83","doi-asserted-by":"crossref","first-page":"55","DOI":"10.1038\/hdy.1988.90","article-title":"Recurrent patterns of chromosome variation in a species group","volume":"61","year":"1988","journal-title":"Heredity"},{"key":"key\n\t\t\t\t20170418142459_msx064-B84","doi-asserted-by":"crossref","first-page":"1586","DOI":"10.1093\/molbev\/msm088","article-title":"PAML 4: phylogenetic analysis by maximum likelihood","volume":"24","year":"2007","journal-title":"Mol Biol Evol"},{"key":"key\n\t\t\t\t20170418142459_msx064-B85","first-page":"32","article-title":"Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models","volume":"12","year":"2000","journal-title":"Mol Biol Evol"},{"key":"key\n\t\t\t\t20170418142459_msx064-B86","doi-asserted-by":"crossref","first-page":"821","DOI":"10.1101\/gr.074492.107","article-title":"Velvet: algorithms for de novo short read assembly using de Bruijn graphs","volume":"18","year":"2008","journal-title":"Genome Res"},{"key":"key\n\t\t\t\t20170418142459_msx064-B87","doi-asserted-by":"crossref","first-page":"522","DOI":"10.1016\/j.cub.2012.01.057","article-title":"Chromosome-wide gene silencing initiates Y degeneration in Drosophila","volume":"22","year":"2012","journal-title":"Curr Biol"},{"key":"key\n\t\t\t\t20170418142459_msx064-B88","doi-asserted-by":"crossref","first-page":"1246338.","DOI":"10.1126\/science.1246338","article-title":"Complex evolutionary trajectories of sex chromosomes across bird taxa","volume":"346","year":"2014","journal-title":"Science"},{"key":"key\n\t\t\t\t20170418142459_msx064-B89","doi-asserted-by":"crossref","first-page":"1233","DOI":"10.1093\/gbe\/evw075","article-title":"Compensation of dosage-sensitive genes on the chicken Z chromosome","volume":"8","year":"2016","journal-title":"Genome Biol Evol"}],"container-title":["Molecular Biology and Evolution"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/mbe\/article-pdf\/34\/5\/1140\/13635872\/msx064.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,7,23]],"date-time":"2022-07-23T01:02:02Z","timestamp":1658538122000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/mbe\/article-lookup\/doi\/10.1093\/molbev\/msx064"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2017,1,31]]},"references-count":89,"journal-issue":{"issue":"5","published-online":{"date-parts":[[2017,1,31]]},"published-print":{"date-parts":[[2017,5]]}},"URL":"https:\/\/doi.org\/10.1093\/molbev\/msx064","relation":{},"ISSN":["0737-4038","1537-1719"],"issn-type":[{"value":"0737-4038","type":"print"},{"value":"1537-1719","type":"electronic"}],"subject":[],"published":{"date-parts":[[2017,1,31]]}}}