{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,15]],"date-time":"2026-09-15T23:56:55Z","timestamp":1789516615351,"version":"build-2803163510"},"reference-count":99,"publisher":"Oxford University Press (OUP)","issue":"2","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2018,2,1]]},"DOI":"10.1093\/molbev\/msx258","type":"journal-article","created":{"date-parts":[[2017,9,27]],"date-time":"2017-09-27T11:08:59Z","timestamp":1506510539000},"page":"287-298","source":"Crossref","is-referenced-by-count":58,"title":["Whole-Genome Sequencing of African Dogs Provides Insights into Adaptations against Tropical Parasites"],"prefix":"10.1093","volume":"35","author":[{"given":"Yan-Hu","family":"Liu","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lu","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tao","family":"Xu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xiaomin","family":"Guo","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yang","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ting-Ting","family":"Yin","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"He-Chuan","family":"Yang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yang","family":"Hu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Adeniyi C","family":"Adeola","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Oscar J","family":"Sanke","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Newton O","family":"Otecko","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Meng","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yaping","family":"Ma","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Olaogun S","family":"Charles","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mikkel-Holger S","family":"Sinding","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shyam","family":"Gopalakrishnan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jos\u00e9","family":"Alfredo Samaniego","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Anders J","family":"Hansen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Carlos","family":"Fernandes","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Philippe","family":"Gaubert","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jane","family":"Budd","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Philip M","family":"Dawuda","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Eli","family":"Knispel Rueness","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lubin","family":"Jiang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Weiwei","family":"Zhai","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"M Thomas P","family":"Gilbert","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Min-Sheng","family":"Peng","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xiaopeng","family":"Qi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Guo-Dong","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ya-Ping","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2017,10,10]]},"reference":[{"issue":"3","key":"key\n\t\t\t\t20180212082655_msx258-B1","doi-asserted-by":"crossref","first-page":"163","DOI":"10.1016\/j.jgg.2016.10.008","article-title":"A cryptic mitochondrial DNA link between North European and West African dogs","volume":"44","author":"Adeola","year":"2017","journal-title":"J Genet Genomics"},{"issue":"9","key":"key\n\t\t\t\t20180212082655_msx258-B2","doi-asserted-by":"crossref","first-page":"1655","DOI":"10.1101\/gr.094052.109","article-title":"Fast model-based estimation of ancestry in unrelated individuals","volume":"19","author":"Alexander","year":"2009","journal-title":"Genome Res"},{"issue":"11","key":"key\n\t\t\t\t20180212082655_msx258-B3","doi-asserted-by":"crossref","first-page":"3757","DOI":"10.1007\/s00436-013-3565-2","article-title":"Genome-wide screening identifies Plasmodium chabaudi-induced modifications of DNA methylation status of Tlr1 and Tlr6 gene promoters in liver, but not spleen, of female C57BL\/6 mice","volume":"112","author":"Al-Quraishy","year":"2013","journal-title":"Parasitol Res"},{"key":"key\n\t\t\t\t20180212082655_msx258-B4","doi-asserted-by":"crossref","first-page":"236","DOI":"10.1186\/1475-2875-13-236","article-title":"Association of candidate gene polymorphisms and TGF-beta\/IL-10 levels with malaria in three regions of Cameroon: a case\u2013control study","volume":"13","author":"Apinjoh","year":"2014","journal-title":"Malar J"},{"key":"key\n\t\t\t\t20180212082655_msx258-B5","volume-title":"Thermal and moisture transport in fibrous materials","author":"Arens","year":"2006"},{"issue":"3","key":"key\n\t\t\t\t20180212082655_msx258-B6","doi-asserted-by":"crossref","first-page":"440","DOI":"10.1016\/S0022-3476(96)70078-1","article-title":"Differences in the in vivo insulin secretion and sensitivity of healthy black versus white adolescents","volume":"129","author":"Arslanian","year":"1996","journal-title":"J Pediatr"},{"issue":"6","key":"key\n\t\t\t\t20180212082655_msx258-B7","first-page":"1923","article-title":"Insulin secretion and sensitivity in black versus white prepubertal healthy children","volume":"82","author":"Arslanian","year":"1997","journal-title":"J Clin Endocrinol Metab"},{"issue":"12","key":"key\n\t\t\t\t20180212082655_msx258-B8","doi-asserted-by":"crossref","first-page":"e1003984","DOI":"10.1371\/journal.pgen.1003984","article-title":"Genetic recombination is targeted towards gene promoter regions in dogs","volume":"9","author":"Auton","year":"2013","journal-title":"PLoS Genet"},{"issue":"5","key":"key\n\t\t\t\t20180212082655_msx258-B10","doi-asserted-by":"crossref","first-page":"e1003509.","DOI":"10.1371\/journal.pgen.1003509","article-title":"Imputation-based meta-analysis of severe malaria in three African populations","volume":"9","author":"Band","year":"2013","journal-title":"PLoS Genet"},{"issue":"3","key":"key\n\t\t\t\t20180212082655_msx258-B11","doi-asserted-by":"crossref","first-page":"340","DOI":"10.1038\/ng.78","article-title":"Natural selection has driven population differentiation in modern humans","volume":"40","author":"Barreiro","year":"2008","journal-title":"Nat Genet"},{"issue":"2","key":"key\n\t\t\t\t20180212082655_msx258-B12","doi-asserted-by":"crossref","first-page":"733","DOI":"10.1534\/genetics.105.049718","article-title":"Assessing the fidelity of ancient DNA sequences amplified from nuclear genes","volume":"172","author":"Binladen","year":"2006","journal-title":"Genetics"},{"issue":"2","key":"key\n\t\t\t\t20180212082655_msx258-B13","doi-asserted-by":"crossref","first-page":"216.","DOI":"10.1186\/gb-2011-12-2-216","article-title":"The domestic dog: man's best friend in the genomic era","volume":"12","author":"Boyko","year":"2011","journal-title":"Genome Biol"},{"issue":"33","key":"key\n\t\t\t\t20180212082655_msx258-B14","doi-asserted-by":"crossref","first-page":"13903","DOI":"10.1073\/pnas.0902129106","article-title":"Complex population structure in African village dogs and its implications for inferring dog domestication history","volume":"106","author":"Boyko","year":"2009","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"9","key":"key\n\t\t\t\t20180212082655_msx258-B15","doi-asserted-by":"crossref","first-page":"3300","DOI":"10.1073\/pnas.0813036106","article-title":"Enhanced sensitivity to DSS colitis caused by a hypomorphic Mbtps1 mutation disrupting the ATF6-driven unfolded protein response","volume":"106","author":"Brandl","year":"2009","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"4","key":"key\n\t\t\t\t20180212082655_msx258-B16","doi-asserted-by":"crossref","first-page":"343.","DOI":"10.3378\/027.084.0401","article-title":"PCAdmix: principal components-based assignment of ancestry along each chromosome in individuals with admixed ancestry from two or more populations","volume":"84","author":"Brisbin","year":"2012","journal-title":"Human Biol"},{"issue":"7534","key":"key\n\t\t\t\t20180212082655_msx258-B17","first-page":"327","article-title":"The African genome variation project shapes medical genetics in Africa","volume":"517","author":"Carstensen","year":"2014","journal-title":"Nature"},{"key":"key\n\t\t\t\t20180212082655_msx258-B18","doi-asserted-by":"crossref","first-page":"e05401.","DOI":"10.7554\/eLife.05401","article-title":"Identification of PLXDC1 and PLXDC2 as the transmembrane receptors for the multifunctional factor PEDF","volume":"3","author":"Cheng","year":"2014","journal-title":"Elife"},{"issue":"15","key":"key\n\t\t\t\t20180212082655_msx258-B19","doi-asserted-by":"crossref","first-page":"2156","DOI":"10.1093\/bioinformatics\/btr330","article-title":"The variant call format and VCFtools","volume":"27","author":"Danecek","year":"2011","journal-title":"Bioinformatics"},{"issue":"11","key":"key\n\t\t\t\t20180212082655_msx258-B20","doi-asserted-by":"crossref","first-page":"7729","DOI":"10.4049\/jimmunol.179.11.7729","article-title":"Extensive characterization of IFN-induced GTPases mGBP1 to mGBP10 involved in host defense","volume":"179","author":"Degrandi","year":"2008","journal-title":"J Immunol"},{"issue":"5","key":"key\n\t\t\t\t20180212082655_msx258-B21","doi-asserted-by":"crossref","first-page":"491","DOI":"10.1038\/ng.806","article-title":"A framework for variation discovery and genotyping using next-generation DNA sequencing data","volume":"43","author":"DePristo","year":"2011","journal-title":"Nat Genet"},{"issue":"5","key":"key\n\t\t\t\t20180212082655_msx258-B22","doi-asserted-by":"crossref","first-page":"507","DOI":"10.1038\/hdy.2011.114","article-title":"Origins of domestic dog in southern East Asia is supported by analysis of Y-chromosome DNA","volume":"108","author":"Ding","year":"2012","journal-title":"Heredity"},{"issue":"16","key":"key\n\t\t\t\t20180212082655_msx258-B23","doi-asserted-by":"crossref","first-page":"2064","DOI":"10.1093\/bioinformatics\/btq322","article-title":"MSMS: a coalescent simulation program including recombination, demographic structure, and selection at a single locus","volume":"26","author":"Ewing","year":"2010","journal-title":"Bioinformatics"},{"issue":"10","key":"key\n\t\t\t\t20180212082655_msx258-B24","doi-asserted-by":"crossref","first-page":"e1003905.","DOI":"10.1371\/journal.pgen.1003905","article-title":"Robust demographic inference from genomic and SNP data","volume":"9","author":"Excoffier","year":"2013","journal-title":"PLoS Genet"},{"issue":"1","key":"key\n\t\t\t\t20180212082655_msx258-B25","doi-asserted-by":"crossref","first-page":"e1004016.","DOI":"10.1371\/journal.pgen.1004016","article-title":"Genome sequencing highlights the dynamic early history of dogs","volume":"10","author":"Freedman","year":"2014","journal-title":"PLoS Genet"},{"issue":"3","key":"key\n\t\t\t\t20180212082655_msx258-B26","doi-asserted-by":"crossref","first-page":"e1005851.","DOI":"10.1371\/journal.pgen.1005851","article-title":"Demographically-based evaluation of genomic regions under selection in domestic dogs","volume":"12","author":"Freedman","year":"2016","journal-title":"PLoS Genet"},{"issue":"8","key":"key\n\t\t\t\t20180212082655_msx258-B27","doi-asserted-by":"crossref","first-page":"e42740.","DOI":"10.1371\/journal.pone.0042740","article-title":"Reviving the African Wolf Canis lupus lupaster in North and West Africa: a mitochondrial lineage ranging more than 6,000 km wide","volume":"7","author":"Gaubert","year":"2012","journal-title":"PLoS One"},{"issue":"2","key":"key\n\t\t\t\t20180212082655_msx258-B28","doi-asserted-by":"crossref","first-page":"473","DOI":"10.1016\/j.jas.2008.09.033","article-title":"Fossil dogs and wolves from Palaeolithic sites in Belgium, the Ukraine and Russia: osteometry, ancient DNA and stable isotopes","volume":"36","author":"Germonpr\u00e9","year":"2009","journal-title":"J Archaeol Sci"},{"issue":"8","key":"key\n\t\t\t\t20180212082655_msx258-B29","doi-asserted-by":"crossref","first-page":"1308","DOI":"10.1101\/gr.171876.113","article-title":"Whole genome sequencing of six dog breeds from continuous altitudes reveals adaption to high-altitude hypoxia","volume":"24","author":"Gou","year":"2014","journal-title":"Genome Res"},{"issue":"8","key":"key\n\t\t\t\t20180212082655_msx258-B30","doi-asserted-by":"crossref","first-page":"1515","DOI":"10.2337\/diabetes.48.8.1515","article-title":"Visceral fat, insulin sensitivity, and lipids in prepubertal children","volume":"48","author":"Gower","year":"1999","journal-title":"Diabetes"},{"key":"key\n\t\t\t\t20180212082655_msx258-B31","doi-asserted-by":"crossref","first-page":"243713.","DOI":"10.1155\/2014\/243713","article-title":"Interferons and interferon regulatory factors in malaria","volume":"2014","author":"Gun","year":"2014","journal-title":"Mediators Inflamm"},{"issue":"3","key":"key\n\t\t\t\t20180212082655_msx258-B32","doi-asserted-by":"crossref","first-page":"1274","DOI":"10.1128\/IAI.06033-11","article-title":"Experimental cerebral malaria develops independently of caspase recruitment domain-containing protein 9 signaling","volume":"80","author":"Hafalla","year":"2012","journal-title":"Infect Immun"},{"issue":"6","key":"key\n\t\t\t\t20180212082655_msx258-B33","doi-asserted-by":"crossref","first-page":"e1003414.","DOI":"10.1371\/journal.ppat.1003414","article-title":"IRG and GBP host resistance factors target aberrant, \u201cnon-self\u201d vacuoles characterized by the missing of \u201cself\u201d IRGM proteins","volume":"9","author":"Haldar","year":"2013","journal-title":"PLoS Pathog"},{"issue":"1","key":"key\n\t\t\t\t20180212082655_msx258-B34","doi-asserted-by":"crossref","first-page":"e1002397.","DOI":"10.1371\/journal.pgen.1002397","article-title":"Genomic ancestry of North Africans supports back-to-Africa migrations","volume":"8","author":"Henn","year":"2012","journal-title":"PLoS Genet"},{"issue":"4","key":"key\n\t\t\t\t20180212082655_msx258-B36","doi-asserted-by":"crossref","first-page":"396","DOI":"10.1038\/ng.321","article-title":"Ccbe1 is required for embryonic lymphangiogenesis and venous sprouting","volume":"41","author":"Hogan","year":"2009","journal-title":"Nat Genet"},{"issue":"1","key":"key\n\t\t\t\t20180212082655_msx258-B37","doi-asserted-by":"crossref","first-page":"44","DOI":"10.1038\/nprot.2008.211","article-title":"Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources","volume":"4","author":"Huang","year":"2009","journal-title":"Nat Protoc"},{"issue":"5","key":"key\n\t\t\t\t20180212082655_msx258-B38","doi-asserted-by":"crossref","first-page":"671","DOI":"10.1016\/j.jhevol.2013.06.004","article-title":"Epidermal pigmentation in the human lineage is an adaptation to ultraviolet radiation","volume":"65","author":"Jablonski","year":"2013","journal-title":"J Hum Evol"},{"issue":"2","key":"key\n\t\t\t\t20180212082655_msx258-B39","doi-asserted-by":"crossref","first-page":"113","DOI":"10.1016\/j.det.2013.11.003","article-title":"The evolution of skin pigmentation and hair texture in people of African ancestry","volume":"32","author":"Jablonski","year":"2014","journal-title":"Dermatol Clin"},{"issue":"7457","key":"key\n\t\t\t\t20180212082655_msx258-B40","doi-asserted-by":"crossref","first-page":"223","DOI":"10.1038\/nature12361","article-title":"PfSETvs methylation of histone H3K36 represses virulence genes in Plasmodium falciparum","volume":"499","author":"Jiang","year":"2013","journal-title":"Nature"},{"issue":"13","key":"key\n\t\t\t\t20180212082655_msx258-B41","doi-asserted-by":"crossref","first-page":"1682","DOI":"10.1093\/bioinformatics\/btt193","article-title":"mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters","volume":"29","author":"J\u00f3nsson","year":"2013","journal-title":"Bioinformatics"},{"issue":"6","key":"key\n\t\t\t\t20180212082655_msx258-B42","doi-asserted-by":"crossref","first-page":"990","DOI":"10.1111\/epi.12173","article-title":"The genetic risk of acute seizures in African children with falciparum malaria","volume":"54","author":"Kariuki","year":"2013","journal-title":"Epilepsia"},{"key":"key\n\t\t\t\t20180212082655_msx258-B43","doi-asserted-by":"crossref","first-page":"2594703","DOI":"10.1155\/2016\/2594703","article-title":"Melatonin-mediated intracellular insulin during 2-deoxy-D-glucose treatment is reduced through autophagy and EDC3 protein in insulinoma INS-1E cells","volume":"2016","author":"Kim","year":"2016","journal-title":"Oxid Med Cell Longev"},{"issue":"1","key":"key\n\t\t\t\t20180212082655_msx258-B44","doi-asserted-by":"crossref","first-page":"34.","DOI":"10.1186\/s13059-017-1153-y","article-title":"The genome landscape of indigenous African cattle","volume":"18","author":"Kim","year":"2017","journal-title":"Genome Biol"},{"issue":"16","key":"key\n\t\t\t\t20180212082655_msx258-B45","doi-asserted-by":"crossref","first-page":"2158","DOI":"10.1016\/j.cub.2015.06.060","article-title":"Genome-wide evidence reveals that African and Eurasian golden jackals are distinct species","volume":"25","author":"Koepfli","year":"2015","journal-title":"Curr Biol"},{"issue":"2","key":"key\n\t\t\t\t20180212082655_msx258-B46","doi-asserted-by":"crossref","first-page":"803","DOI":"10.1073\/pnas.022629899","article-title":"Mutation rates in mammalian genomes","volume":"99","author":"Kumar","year":"2002","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"9","key":"key\n\t\t\t\t20180212082655_msx258-B47","doi-asserted-by":"crossref","first-page":"1456","DOI":"10.1128\/CVI.00506-07","article-title":"Levels of soluble CD163 and severity of malaria in children in Ghana","volume":"15","author":"Kusi","year":"2008","journal-title":"Clin Vaccine Immunol"},{"issue":"5755","key":"key\n\t\t\t\t20180212082655_msx258-B501","doi-asserted-by":"crossref","first-page":"1782","DOI":"10.1126\/science.1116238","article-title":"SLC24A5, a putative cation exchanger, affects pigmentation in zebrafish and humans","volume":"310","author":"Lamason","year":"2005","journal-title":"Science"},{"issue":"1\u20132","key":"key\n\t\t\t\t20180212082655_msx258-B48","doi-asserted-by":"crossref","first-page":"46","DOI":"10.1016\/j.physbeh.2005.06.028","article-title":"Primary neurologic screening and motor coordination of Dst dt-J mutant mice (dystonia musculorum) with spinocerebellar atrophy","volume":"86","author":"Lalonde","year":"2005","journal-title":"Physiol Behav"},{"issue":"2","key":"key\n\t\t\t\t20180212082655_msx258-B502","doi-asserted-by":"crossref","first-page":"113","DOI":"10.1016\/j.ygeno.2014.05.004","article-title":"Genome-wide copy number variation study reveals KCNIP1 as a modulator of insulin secretion","volume":"104","author":"Lee","year":"2014","journal-title":"Genomics"},{"key":"key\n\t\t\t\t20180212082655_msx258-B49","doi-asserted-by":"crossref","first-page":"162","DOI":"10.1186\/1471-2164-15-162","article-title":"SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data","volume":"15","author":"Lee","year":"2014","journal-title":"BMC Genomics"},{"issue":"2","key":"key\n\t\t\t\t20180212082655_msx258-B50","doi-asserted-by":"crossref","first-page":"155","DOI":"10.1016\/j.tvjl.2011.06.013","article-title":"LUPA: a European initiative taking advantage of the canine genome architecture for unravelling complex disorders in both human and dogs","volume":"189","author":"Lequarr\u00e9","year":"2011","journal-title":"Vet J"},{"key":"key\n\t\t\t\t20180212082655_msx258-B51","author":"Li","year":"2013"},{"issue":"5","key":"key\n\t\t\t\t20180212082655_msx258-B52","doi-asserted-by":"crossref","first-page":"1200.","DOI":"10.1093\/molbev\/msu070","article-title":"Population variation revealed high-altitude adaptation of Tibetan mastiffs","volume":"31","author":"Li","year":"2014","journal-title":"Mol Biol Evol"},{"issue":"10","key":"key\n\t\t\t\t20180212082655_msx258-B53","doi-asserted-by":"crossref","first-page":"1615","DOI":"10.1084\/jem.20042307","article-title":"The macrophage F4\/80 receptor is required for the induction of antigen-specific efferent regulatory T cells in peripheral tolerance","volume":"201","author":"Lin","year":"2005","journal-title":"J Exp Med"},{"issue":"12","key":"key\n\t\t\t\t20180212082655_msx258-B54","doi-asserted-by":"crossref","first-page":"3324","DOI":"10.1093\/molbev\/msu264","article-title":"Adaptations to climate-mediated selective pressures in sheep","volume":"31","author":"Lv","year":"2014","journal-title":"Mol Biol Evol"},{"issue":"5","key":"key\n\t\t\t\t20180212082655_msx258-B55","doi-asserted-by":"crossref","first-page":"775","DOI":"10.1111\/j.1365-2141.2010.08165.x","article-title":"Malaria: looking for selection signatures in the human PKLR gene region","volume":"149","author":"Machado","year":"2010","journal-title":"Br J Haematol"},{"issue":"11","key":"key\n\t\t\t\t20180212082655_msx258-B503","doi-asserted-by":"crossref","first-page":"1197","DOI":"10.1038\/ng.3107","article-title":"Reappraisal of known malaria resistance loci in a large multicenter study","volume":"46","author":"Malaria Genomic Epidemiology Network","year":"2014","journal-title":"Nat genet."},{"issue":"962","key":"key\n\t\t\t\t20180212082655_msx258-B56","doi-asserted-by":"crossref","first-page":"734","DOI":"10.1136\/pgmj.2004.028274","article-title":"Diabetes in African Americans","volume":"81","author":"Marshall","year":"2005","journal-title":"Postgrad Med J"},{"issue":"5828","key":"key\n\t\t\t\t20180212082655_msx258-B57","doi-asserted-by":"crossref","first-page":"1160","DOI":"10.1126\/science.1140321","article-title":"ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage","volume":"316","author":"Matsuoka","year":"2007","journal-title":"Science"},{"key":"key\n\t\t\t\t20180212082655_msx258-B58","volume-title":"The wolf: the ecology and behavior of an endangered species","author":"Mech","year":"1981"},{"issue":"175","key":"key\n\t\t\t\t20180212082655_msx258-B59","doi-asserted-by":"crossref","first-page":"ra36.","DOI":"10.1126\/scisignal.2001325","article-title":"Integration of activating and inhibitory receptor signaling by regulated phosphorylation of Vav1 in immune cells","volume":"4","author":"Mesecke","year":"2011","journal-title":"Sci Signal"},{"issue":"1","key":"key\n\t\t\t\t20180212082655_msx258-B60","first-page":"44.","article-title":"Did disease constrain the spread of domestic dogs (Canis familiaris) into Sub-Saharan Africa?","volume":"50","author":"Mitchell","year":"2015","journal-title":"Azania Archaeol Res Afr"},{"issue":"1","key":"key\n\t\t\t\t20180212082655_msx258-B61","doi-asserted-by":"crossref","first-page":"557","DOI":"10.4049\/jimmunol.179.1.557","article-title":"Genome-wide expression analysis of placental malaria reveals features of lymphoid neogenesis during chronic infection","volume":"179","author":"Muehlenbachs","year":"2007","journal-title":"J Immunol"},{"issue":"11","key":"key\n\t\t\t\t20180212082655_msx258-B62","doi-asserted-by":"crossref","first-page":"723","DOI":"10.1038\/nri3073","article-title":"Protective and pathogenic functions of macrophage subsets","volume":"11","author":"Murray","year":"2011","journal-title":"Nat Rev Immunol"},{"issue":"3","key":"key\n\t\t\t\t20180212082655_msx258-B64","doi-asserted-by":"crossref","first-page":"710","DOI":"10.1093\/molbev\/msl203","article-title":"Genetic evidence for the convergent evolution of light skin in Europeans and East Asians","volume":"24","author":"Norton","year":"2007","journal-title":"Mol Biol Evol"},{"issue":"12","key":"key\n\t\t\t\t20180212082655_msx258-B66","doi-asserted-by":"crossref","first-page":"2849","DOI":"10.1093\/molbev\/msp195","article-title":"mtDNA data indicate a single origin for dogs south of Yangtze River, less than 16,300 years ago, from numerous wolves","volume":"26","author":"Pang","year":"2009","journal-title":"Mol Biol Evol"},{"issue":"11","key":"key\n\t\t\t\t20180212082655_msx258-B67","doi-asserted-by":"crossref","first-page":"1523","DOI":"10.5713\/ajas.2013.13413","article-title":"Genome-wide association study of chicken plumage pigmentation","volume":"26","author":"Park","year":"2013","journal-title":"Asian-Australas J Anim Sci"},{"issue":"3","key":"key\n\t\t\t\t20180212082655_msx258-B68","doi-asserted-by":"crossref","first-page":"1065","DOI":"10.1534\/genetics.112.145037","article-title":"Ancient admixture in human history","volume":"192","author":"Patterson","year":"2012","journal-title":"Genetics"},{"issue":"12","key":"key\n\t\t\t\t20180212082655_msx258-B69","doi-asserted-by":"crossref","first-page":"2074","DOI":"10.1371\/journal.pgen.0020190","article-title":"Population Structure and Eigenanalysis","volume":"2","author":"Patterson","year":"2006","journal-title":"PLoS Genet"},{"issue":"9","key":"key\n\t\t\t\t20180212082655_msx258-B70","doi-asserted-by":"crossref","first-page":"2224","DOI":"10.1093\/molbev\/mst112","article-title":"SweeD: likelihood-based detection of selective sweeps in thousands of genomes","volume":"30","author":"Pavlidis","year":"2013","journal-title":"Mol Biol Evol"},{"issue":"1","key":"key\n\t\t\t\t20180212082655_msx258-B71","doi-asserted-by":"crossref","first-page":"97","DOI":"10.1016\/j.immuni.2013.06.012","article-title":"Antagonistic regulation by the transcription factors C\/EBP\u03b1 and MITF specifies basophil and mast cell fates","volume":"39","author":"Qi","year":"2013","journal-title":"Immunity"},{"key":"key\n\t\t\t\t20180212082655_msx258-B504","article-title":"Yak whole-genome resequencing reveals domestication signatures and prehistoric population expansions","volume":"6","author":"Qiang","year":"2015","journal-title":"Nat Commun"},{"key":"key\n\t\t\t\t20180212082655_msx258-B72","doi-asserted-by":"crossref","first-page":"182","DOI":"10.1016\/j.ygcen.2015.04.011","article-title":"Nucleobindin-1 encodes a nesfatin-1-like peptide that stimulates insulin secretion","volume":"216","author":"Ramesh","year":"2015","journal-title":"Gen Comp Endocrinol"},{"issue":"6234","key":"key\n\t\t\t\t20180212082655_msx258-B73","doi-asserted-by":"crossref","first-page":"1253671.","DOI":"10.1126\/science.1253671","article-title":"Proteomics reveals dynamic assembly of repair complexes during bypass of DNA cross-links","volume":"348","author":"R\u00e4schle","year":"2015","journal-title":"Science"},{"issue":"4","key":"key\n\t\t\t\t20180212082655_msx258-B74","doi-asserted-by":"crossref","first-page":"503","DOI":"10.1080\/00034983.1998.11813308","article-title":"Canine babesiosis in South Africa: more than one disease. Does this serve as a model for falciparum malaria","volume":"92","author":"Reyers","year":"1998","journal-title":"Ann Trop Med Parasitol"},{"issue":"12","key":"key\n\t\t\t\t20180212082655_msx258-B75","doi-asserted-by":"crossref","first-page":"2829","DOI":"10.1016\/j.celrep.2015.11.055","article-title":"Type I interferon transcriptional signature in neutrophils and low-density granulocytes are associated with tissue damage in malaria","volume":"13","author":"Rocha","year":"2015","journal-title":"Cell Rep"},{"issue":"1","key":"key\n\t\t\t\t20180212082655_msx258-B76","doi-asserted-by":"crossref","first-page":"e16385.","DOI":"10.1371\/journal.pone.0016385","article-title":"The Cryptic African Wolf: Canis aureus lupaster is not a golden jackal and is not endemic to Egypt","volume":"6","author":"Rueness","year":"2012","journal-title":"PLoS One"},{"issue":"10","key":"key\n\t\t\t\t20180212082655_msx258-B77","doi-asserted-by":"crossref","first-page":"1479","DOI":"10.1038\/cr.2012.110","article-title":"The R-Ras\/RIN2\/Rab5 complex controls endothelial cell adhesion and morphogenesis via active integrin endocytosis and Rac signaling","volume":"22","author":"Sandri","year":"2012","journal-title":"Cell Res"},{"issue":"1","key":"key\n\t\t\t\t20180212082655_msx258-B78","doi-asserted-by":"crossref","first-page":"132","DOI":"10.2353\/ajpath.2006.060085","article-title":"Photoreceptor cell apoptosis in the retinal degeneration of Uchl3-deficient mice","volume":"169","author":"Sano","year":"2006","journal-title":"Am J Pathol"},{"issue":"11","key":"key\n\t\t\t\t20180212082655_msx258-B79","doi-asserted-by":"crossref","first-page":"1191","DOI":"10.1292\/jvms.69.1191","article-title":"Molecular survey of Babesia canis in dogs in Nigeria","volume":"69","author":"Sasaki","year":"2007","journal-title":"J Vet Med Sci"},{"issue":"5598","key":"key\n\t\t\t\t20180212082655_msx258-B80","doi-asserted-by":"crossref","first-page":"1610","DOI":"10.1126\/science.1073906","article-title":"Genetic evidence for an East Asian origin of domestic dogs","volume":"298","author":"Savolainen","year":"2002","journal-title":"Science"},{"issue":"1\u20132","key":"key\n\t\t\t\t20180212082655_msx258-B81","doi-asserted-by":"crossref","first-page":"27","DOI":"10.1242\/dmm.004358","article-title":"Leading the way: canine models of genomics and disease","volume":"3","author":"Shearin","year":"2010","journal-title":"Dis Model Mech"},{"key":"key\n\t\t\t\t20180212082655_msx258-B82","doi-asserted-by":"crossref","first-page":"215","DOI":"10.1111\/j.1600-065X.1985.tb01160.x","article-title":"Graft\u2010versus\u2010host disease in dog and man: the Seattle experience","volume":"88","author":"Storb","year":"1985","journal-title":"Immunol Rev"},{"issue":"3","key":"key\n\t\t\t\t20180212082655_msx258-B83","doi-asserted-by":"crossref","first-page":"313","DOI":"10.2337\/diab.41.3.313","article-title":"Black-white contrasts in insulin levels during pubertal development. The Bogalusa Heart Study","volume":"41","author":"Svec","year":"1992","journal-title":"Diabetes"},{"issue":"1","key":"key\n\t\t\t\t20180212082655_msx258-B84","doi-asserted-by":"crossref","first-page":"43","DOI":"10.1046\/j.1469-1809.2001.6510043.x","article-title":"The phylogeography of Y chromosome binary haplotypes and the origins of modern human populations","volume":"65","author":"Underhill","year":"2001","journal-title":"Ann Hum Genet"},{"issue":"5319","key":"key\n\t\t\t\t20180212082655_msx258-B85","doi-asserted-by":"crossref","first-page":"1687","DOI":"10.1126\/science.276.5319.1687","article-title":"Multiple and ancient origins of the domestic dog","volume":"276","author":"Vil\u00e0","year":"1997","journal-title":"Science"},{"issue":"8","key":"key\n\t\t\t\t20180212082655_msx258-B506","doi-asserted-by":"crossref","first-page":"1294","DOI":"10.1101\/gr.116301.110","article-title":"A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids","volume":"21","author":"vonHoldt","year":"2011","journal-title":"Genome Res."},{"issue":"8","key":"key\n\t\t\t\t20180212082655_msx258-B86","doi-asserted-by":"crossref","first-page":"2122","DOI":"10.1093\/gbe\/evu162","article-title":"Genetic convergence in the adaptation of dogs and humans to the high-altitude environment of the Tibetan plateau","volume":"6","author":"Wang","year":"2014","journal-title":"Genome Biol Evol"},{"key":"key\n\t\t\t\t20180212082655_msx258-B87","doi-asserted-by":"crossref","first-page":"1860.","DOI":"10.1038\/ncomms2814","article-title":"The genomics of selection in dogs and the parallel evolution between dogs and humans","volume":"4","author":"Wang","year":"2013","journal-title":"Nat Commun"},{"issue":"1","key":"key\n\t\t\t\t20180212082655_msx258-B88","doi-asserted-by":"crossref","first-page":"21","DOI":"10.1038\/cr.2015.147","article-title":"Out of southern East Asia: the natural history of domestic dogs across the world","volume":"26","author":"Wang","year":"2016","journal-title":"Cell Res"},{"issue":"6","key":"key\n\t\t\t\t20180212082655_msx258-B89","first-page":"315.","article-title":"The geographical distribution of grey wolves (Canis lupus) in China: a systematic review","volume":"37","author":"Wang","year":"2016","journal-title":"Zool Res"},{"issue":"2","key":"key\n\t\t\t\t20180212082655_msx258-B90","doi-asserted-by":"crossref","first-page":"e17080.","DOI":"10.1371\/journal.pone.0017080","article-title":"The light responsive transcriptome of the zebrafish: function and regulation","volume":"6","author":"Weger","year":"2011","journal-title":"PloS One"},{"key":"key\n\t\t\t\t20180212082655_msx258-B91","first-page":"189","article-title":"World Malaria Report 2015","volume":"30","author":"WHO","year":"2015","journal-title":"World Malar Rep"},{"issue":"2","key":"key\n\t\t\t\t20180212082655_msx258-B92","doi-asserted-by":"crossref","first-page":"595","DOI":"10.1534\/genetics.109.106831","article-title":"A comprehensive linkage map of the dog genome","volume":"184","author":"Wong","year":"2010","journal-title":"Genetics"},{"key":"key\n\t\t\t\t20180212082655_msx258-B93","doi-asserted-by":"crossref","first-page":"35004.","DOI":"10.1038\/srep35004","article-title":"Identifying molecular signatures of hypoxia adaptation from sex chromosomes: a case for Tibetan Mastiff based on analyses of X chromosome","volume":"6","author":"Wu","year":"2016","journal-title":"Sci Rep"},{"issue":"10","key":"key\n\t\t\t\t20180212082655_msx258-B94","doi-asserted-by":"crossref","first-page":"e1005930.","DOI":"10.1371\/journal.ppat.1005930","article-title":"Increased CD40 expression enhances early STING-mediated type I interferon response and host survival in a rodent malaria model","volume":"12","author":"Yao","year":"2016","journal-title":"PLoS Pathog"},{"issue":"5987","key":"key\n\t\t\t\t20180212082655_msx258-B95","doi-asserted-by":"crossref","first-page":"75","DOI":"10.1126\/science.1190371","article-title":"Sequencing of 50 human exomes reveals adaptation to high altitude","volume":"329","author":"Yi","year":"2010","journal-title":"Science"},{"issue":"2","key":"key\n\t\t\t\t20180212082655_msx258-B96","doi-asserted-by":"crossref","first-page":"203","DOI":"10.1007\/s10142-010-0198-8","article-title":"Integrating miRNA and mRNA expression profiles in response to heat stress-induced injury in rat small intestine","volume":"11","author":"Yu","year":"2011","journal-title":"Funct Integr Genomics"},{"issue":"5","key":"key\n\t\t\t\t20180212082655_msx258-B97","doi-asserted-by":"crossref","first-page":"1093","DOI":"10.1016\/j.immuni.2016.10.001","article-title":"Cross-regulation of two type I interferon signaling pathways in plasmacytoid dendritic cells controls anti-malaria immunity and host mortality","volume":"45","author":"Yu","year":"2016","journal-title":"Immunity"},{"issue":"5","key":"key\n\t\t\t\t20180212082655_msx258-B98","doi-asserted-by":"crossref","first-page":"10626","DOI":"10.3390\/ijms140510626","article-title":"Transcriptional profiling of swine lung tissue after experimental infection with Actinobacillus pleuropneumoniae","volume":"14","author":"Zuo","year":"2012","journal-title":"Int J Mol Sci"}],"container-title":["Molecular Biology and Evolution"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/mbe\/article-pdf\/35\/2\/287\/23883917\/msx258.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,10,4]],"date-time":"2019-10-04T00:48:33Z","timestamp":1570150113000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/mbe\/article\/35\/2\/287\/4316110"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2017,10,10]]},"references-count":99,"journal-issue":{"issue":"2","published-online":{"date-parts":[[2017,10,10]]},"published-print":{"date-parts":[[2018,2,1]]}},"URL":"https:\/\/doi.org\/10.1093\/molbev\/msx258","relation":{},"ISSN":["0737-4038","1537-1719"],"issn-type":[{"value":"0737-4038","type":"print"},{"value":"1537-1719","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2018,2]]},"published":{"date-parts":[[2017,10,10]]}}}