{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,13]],"date-time":"2026-05-13T03:23:29Z","timestamp":1778642609143,"version":"3.51.4"},"reference-count":101,"publisher":"Oxford University Press (OUP)","issue":"20","license":[{"start":{"date-parts":[[2019,10,10]],"date-time":"2019-10-10T00:00:00Z","timestamp":1570665600000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"Department of Biotechnology, Government of India","award":["BT\/PR13008\/MED\/30\/1497\/2015"],"award-info":[{"award-number":["BT\/PR13008\/MED\/30\/1497\/2015"]}]},{"DOI":"10.13039\/501100001843","name":"Science and Engineering Research Board","doi-asserted-by":"publisher","award":["EMR\/2015\/000747"],"award-info":[{"award-number":["EMR\/2015\/000747"]}],"id":[{"id":"10.13039\/501100001843","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["R01 GM051968"],"award-info":[{"award-number":["R01 GM051968"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2019,11,18]]},"abstract":"<jats:title>Abstract<\/jats:title><jats:p>Alternative polyadenylation (APA)-mediated 3\u2032-untranslated region (UTR) shortening is known to increase protein expression due to the loss of miRNA regulatory sites. Yet, mRNAs with longer 3\u2032-UTR also show enhanced protein expression. Here, we identify a mechanism by which longer transcripts generated by the distal-most APA site leads to increased protein expression compared to the shorter transcripts and the longer transcripts are positioned to regulate heart failure (HF). A Star-PAP target gene, NQO1 has three poly(A) sites (PA-sites) at the terminal exon on the pre-mRNA. Star-PAP selects the distal-most site that results in the expression of the longest isoform. We show that the NQO1 distal-specific mRNA isoform accounts for the majority of cellular NQO1 protein. Star-PAP control of the distal-specific isoform is stimulated by oxidative stress and the toxin dioxin. The longest NQO1 transcript has increased poly(A) tail (PA-tail) length that accounts for the difference in translation potentials of the three NQO1 isoforms. This mechanism is involved in the regulation of cardiac hypertrophy (CH), an antecedent condition to HF where NQO1 downregulation stems from the loss of the distal-specific transcript. The loss of NQO1 during hypertrophy was rescued by ectopic expression of the distal- but not the proximal- or middle-specific NQO1 mRNA isoforms in the presence of Star-PAP expression, and reverses molecular events of hypertrophy in cardiomyocytes.<\/jats:p>","DOI":"10.1093\/nar\/gkz875","type":"journal-article","created":{"date-parts":[[2019,10,8]],"date-time":"2019-10-08T08:17:03Z","timestamp":1570522623000},"page":"10771-10787","source":"Crossref","is-referenced-by-count":25,"title":["Star-PAP controlled alternative polyadenylation coupled poly(A) tail length regulates protein expression in hypertrophic heart"],"prefix":"10.1093","volume":"47","author":[{"given":"A P","family":"Sudheesh","sequence":"first","affiliation":[{"name":"Cardiovascular and Diabetes Biology Group, Rajiv Gandhi Centre for Biotechnology, Trivandrum-014, India"},{"name":"Manipal Academy of Higher Education, Manipal 576104, India"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Nimmy","family":"Mohan","sequence":"additional","affiliation":[{"name":"Cardiovascular and Diabetes Biology Group, Rajiv Gandhi Centre for Biotechnology, Trivandrum-014, India"},{"name":"Manipal Academy of Higher Education, Manipal 576104, India"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Nimmy","family":"Francis","sequence":"additional","affiliation":[{"name":"Cardiovascular and Diabetes Biology Group, Rajiv Gandhi Centre for Biotechnology, Trivandrum-014, India"},{"name":"Manipal Academy of Higher Education, Manipal 576104, India"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Rakesh S","family":"Laishram","sequence":"additional","affiliation":[{"name":"Cardiovascular and Diabetes Biology Group, Rajiv Gandhi Centre for Biotechnology, Trivandrum-014, India"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Richard A","family":"Anderson","sequence":"additional","affiliation":[{"name":"School of Medicine and Public Health, University of Wisconsin, MD 53726, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2019,10,10]]},"reference":[{"key":"2019121303071701000_B1","doi-asserted-by":"crossref","first-page":"2185","DOI":"10.1016\/j.febslet.2014.05.029","article-title":"Poly(A) polymerase (PAP) diversity in gene expression\u2013star-PAP vs canonical PAP","volume":"588","author":"Laishram","year":"2014","journal-title":"FEBS Lett."},{"key":"2019121303071701000_B2","doi-asserted-by":"crossref","first-page":"aad9926","DOI":"10.1126\/science.aad9926","article-title":"Transcriptional termination in mammals: stopping the RNA polymerase II juggernaut","volume":"352","author":"Proudfoot","year":"2016","journal-title":"Science"},{"key":"2019121303071701000_B3","doi-asserted-by":"crossref","first-page":"255","DOI":"10.1016\/j.tibs.2014.04.002","article-title":"Sizing up the poly(A) tail: insights from deep sequencing","volume":"39","author":"Zheng","year":"2014","journal-title":"Trends Biochem. 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