{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,15]],"date-time":"2026-08-15T12:33:29Z","timestamp":1786797209533,"version":"build-2736575974"},"reference-count":127,"publisher":"Oxford University Press (OUP)","issue":"4","license":[{"start":{"date-parts":[[2024,10,23]],"date-time":"2024-10-23T00:00:00Z","timestamp":1729641600000},"content-version":"vor","delay-in-days":22,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100000265","name":"Medical Research Council","doi-asserted-by":"publisher","award":["G1100015"],"award-info":[{"award-number":["G1100015"]}],"id":[{"id":"10.13039\/501100000265","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100000265","name":"Medical Research Council","doi-asserted-by":"publisher","award":["MR\/Y010329\/1"],"award-info":[{"award-number":["MR\/Y010329\/1"]}],"id":[{"id":"10.13039\/501100000265","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["1R56AG061911-01"],"award-info":[{"award-number":["1R56AG061911-01"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100000038","name":"Natural Sciences and Engineering Research Council of Canada","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100000038","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2024,10,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>A majority of human genes produce non-protein-coding RNA (ncRNA), and some have roles in development and disease. Neither ncRNA nor human skeletal muscle is ideally studied using short-read sequencing, so we used a customized RNA pipeline and network modelling to study cell-type specific ncRNA responses during muscle growth at scale. We completed five human resistance-training studies (n = 144 subjects), identifying 61% who successfully accrued muscle-mass. We produced 288 transcriptome-wide profiles and found 110 ncRNAs linked to muscle growth in vivo, while a transcriptome-driven network model demonstrated interactions via a number of discrete functional pathways and single-cell types. This analysis included established hypertrophy-related ncRNAs, including CYTOR\u2014which was leukocyte-associated (false discovery rate [FDR] = 4.9 \u00d7 10\u22127). Novel hypertrophy-linked ncRNAs included PPP1CB-DT (myofibril assembly genes, FDR = 8.15 \u00d7 10\u22128), and EEF1A1P24 and TMSB4XP8 (vascular remodelling and angiogenesis genes, FDR = 2.77 \u00d7 10\u22125). We also discovered that hypertrophy lncRNA MYREM shows a specific myonuclear expression pattern in vivo. Our multi-layered analyses established that single-cell-associated ncRNA are identifiable from bulk muscle transcriptomic data and that hypertrophy-linked ncRNA genes mediate their association with muscle growth via multiple cell types and a set of interacting pathways.<\/jats:p>","DOI":"10.1093\/narmme\/ugae016","type":"journal-article","created":{"date-parts":[[2024,10,21]],"date-time":"2024-10-21T15:23:57Z","timestamp":1729524237000},"source":"Crossref","is-referenced-by-count":11,"title":["Network-based modelling reveals cell-type enriched patterns of non-coding RNA regulation during human skeletal muscle remodelling"],"prefix":"10.1093","volume":"1","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-2471-7482","authenticated-orcid":false,"given":"Jonathan\u00a0C","family":"Mcleod","sequence":"first","affiliation":[{"name":"Department of Kinesiology, McMaster University , Hamilton , Ontario , L8S 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4L8,","place":["Canada"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"James","family":"McKendry","sequence":"additional","affiliation":[{"name":"Department of Kinesiology, McMaster University , Hamilton , Ontario , L8S 4L8,","place":["Canada"]},{"name":"Faculty of Land and Food Systems, Food, Nutrition & Health, University of British Columbia , BC , V6T 1Z4,","place":["Canada"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Robert\u00a0W","family":"Morton","sequence":"additional","affiliation":[{"name":"Department of Kinesiology, McMaster University , Hamilton , Ontario , L8S 4L8,","place":["Canada"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3843-6806","authenticated-orcid":false,"given":"Cameron\u00a0J","family":"Mitchell","sequence":"additional","affiliation":[{"name":"School of Kinesiology, University of British Columbia , BC , V6T 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