{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,1]],"date-time":"2026-06-01T19:23:08Z","timestamp":1780341788559,"version":"3.54.1"},"reference-count":152,"publisher":"Oxford University Press (OUP)","issue":"1","license":[{"start":{"date-parts":[[2020,11,27]],"date-time":"2020-11-27T00:00:00Z","timestamp":1606435200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"funder":[{"name":"JST CREST","award":["JPMJCR16O3"],"award-info":[{"award-number":["JPMJCR16O3"]}]},{"DOI":"10.13039\/501100001711","name":"Swiss National Science Foundation","doi-asserted-by":"publisher","award":["31003A_182318"],"award-info":[{"award-number":["31003A_182318"]}],"id":[{"id":"10.13039\/501100001711","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001711","name":"Swiss National Science Foundation","doi-asserted-by":"publisher","award":["CRSII5_183578"],"award-info":[{"award-number":["CRSII5_183578"]}],"id":[{"id":"10.13039\/501100001711","id-type":"DOI","asserted-by":"publisher"}]},{"name":"NCCR Evolving Language","award":["51NF40_180888"],"award-info":[{"award-number":["51NF40_180888"]}]},{"name":"European Union's Horizon 2020 research and innovation programme"},{"name":"Marie Sklodowska-Curie","award":["847585"],"award-info":[{"award-number":["847585"]}]},{"name":"MEXT KAKENHI The Birth of New Plant Species","award":["JP16H06469"],"award-info":[{"award-number":["JP16H06469"]}]},{"name":"MEXT KAKENHI The Birth of New Plant Species","award":["JP16H06464"],"award-info":[{"award-number":["JP16H06464"]}]},{"name":"MEXT KAKENHI The Birth of New Plant Species","award":["JP16H06466"],"award-info":[{"award-number":["JP16H06466"]}]},{"name":"MEXT KAKENHI The Birth of New Plant Species","award":["JP16K21727"],"award-info":[{"award-number":["JP16K21727"]}]},{"name":"National Agriculture and Food Research Organization (NARO) Vice President Fund"},{"name":"NBRP Genome Information Upgrading Project 2017, AMED"},{"name":"University of Zurich Research Priority Program Evolution in Action"},{"name":"German Federal Ministry of Food and Agriculture","award":["2819103915"],"award-info":[{"award-number":["2819103915"]}]},{"name":"Canadian Triticum Applied Genomics research project (CTAG2) funded by Genome Canada"},{"DOI":"10.13039\/501100010788","name":"Genome Prairie","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100010788","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Western Grains Research Foundation, Government of Saskatchewan, Saskatchewan Wheat Development Commission, Alberta Wheat Commission, Viterra and Manitoba Wheat and Barley Growers Association"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2021,3,25]]},"abstract":"<jats:title>Abstract<\/jats:title><jats:p>Bread wheat is a major crop that has long been the focus of basic and breeding research. Assembly of its genome has been difficult because of its large size and allohexaploid nature (AABBDD genome). Following the first reported assembly of the genome of the experimental strain Chinese Spring (CS), the 10+ Wheat Genomes Project was launched to produce multiple assemblies of worldwide modern cultivars. The only Asian cultivar in the project is Norin 61, a representative Japanese cultivar adapted to grow across a broad latitudinal range, mostly characterized by a wet climate and a short growing season. Here, we characterize the key aspects of its chromosome-scale genome assembly spanning 15\u2009Gb with a raw scaffold N50 of 22\u2009Mb. Analysis of the repetitive elements identified chromosomal regions unique to Norin 61 that encompass a tandem array of the pathogenesis-related 13 family. We report novel copy-number variations in the B homeolog of the florigen gene FT1\/VRN3, pseudogenization of its D homeolog and the association of its A homeologous alleles with the spring\/winter growth habit. Furthermore, the Norin 61 genome carries typical East Asian functional variants different from CS, ranging from a single nucleotide to multi-Mb scale. Examples of such variation are the Fhb1 locus, which confers Fusarium head-blight resistance, Ppd-D1a, which confers early flowering, Glu-D1f for Asian noodle quality and Rht-D1b, which introduced semi-dwarfism during the green revolution. The adoption of Norin 61 as a reference assembly for functional and evolutionary studies will enable comprehensive characterization of the underexploited Asian bread wheat diversity.<\/jats:p>","DOI":"10.1093\/pcp\/pcaa152","type":"journal-article","created":{"date-parts":[[2020,11,23]],"date-time":"2020-11-23T12:08:40Z","timestamp":1606133320000},"page":"8-27","source":"Crossref","is-referenced-by-count":47,"title":["De Novo Genome Assembly of the Japanese Wheat Cultivar Norin 61 Highlights Functional Variation in Flowering Time and<i>Fusarium<\/i>-Resistant Genes in East Asian Genotypes"],"prefix":"10.1093","volume":"62","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-6483-1781","authenticated-orcid":false,"given":"Kentaro K","family":"Shimizu","sequence":"first","affiliation":[{"name":"Kihara Institute for Biological Research, Yokohama City University, Yokohama, Japan"},{"name":"Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Dario","family":"Copetti","sequence":"additional","affiliation":[{"name":"Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland"},{"name":"Department of Environmental Systems Science, Molecular Plant Breeding, Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4398-5917","authenticated-orcid":false,"given":"Moeko","family":"Okada","sequence":"additional","affiliation":[{"name":"Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Thomas","family":"Wicker","sequence":"additional","affiliation":[{"name":"Department of Plant and Microbial Biology, University of Zurich, Zurich, Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Toshiaki","family":"Tameshige","sequence":"additional","affiliation":[{"name":"Kihara Institute for Biological Research, Yokohama City University, Yokohama, Japan"},{"name":"Department of Biology, Faculty of Science, Niigata University, Niigata, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Masaomi","family":"Hatakeyama","sequence":"additional","affiliation":[{"name":"Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland"},{"name":"Functional Genomics Center Zurich, Zurich, Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rie","family":"Shimizu-Inatsugi","sequence":"additional","affiliation":[{"name":"Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Catharine","family":"Aquino","sequence":"additional","affiliation":[{"name":"Functional Genomics Center Zurich, Zurich, Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kazusa","family":"Nishimura","sequence":"additional","affiliation":[{"name":"Graduate School of Agriculture, Kyoto University, Kizugawa, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Fuminori","family":"Kobayashi","sequence":"additional","affiliation":[{"name":"Division of Basic Research, Institute of Crop Science, NARO, Tsukuba, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kazuki","family":"Murata","sequence":"additional","affiliation":[{"name":"Graduate School of Agriculture, Kyoto University, Kyoto, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tony","family":"Kuo","sequence":"additional","affiliation":[{"name":"National Institute of Advanced Industrial Science and Technology (AIST), Tokyo, Japan"},{"name":"University of Guelph, Centre for Biodiversity Genomics, Guelph, ON, Canada"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Emily","family":"Delorean","sequence":"additional","affiliation":[{"name":"Department of Plant Pathology, Kansas State University, Manhattan, KS, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jesse","family":"Poland","sequence":"additional","affiliation":[{"name":"Department of Plant Pathology, Kansas State University, Manhattan, KS, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Georg","family":"Haberer","sequence":"additional","affiliation":[{"name":"Helmholtz Zentrum M\u00fcnchen\u2014Research Center for Environmental Health, Neuherberg, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Manuel","family":"Spannagl","sequence":"additional","affiliation":[{"name":"Helmholtz Zentrum M\u00fcnchen\u2014Research Center for Environmental Health, Neuherberg, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Klaus F X","family":"Mayer","sequence":"additional","affiliation":[{"name":"Helmholtz Zentrum M\u00fcnchen\u2014Research Center for Environmental Health, Neuherberg, Germany"},{"name":"School of Life Sciences, Technical University Munich, Weihenstephan, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6795-6192","authenticated-orcid":false,"given":"Juan","family":"Gutierrez-Gonzalez","sequence":"additional","affiliation":[{"name":"Department of Agronomy and Plant Genetics, University of Minnesota, Saint Paul, MN, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Gary J","family":"Muehlbauer","sequence":"additional","affiliation":[{"name":"Department of Agronomy and Plant Genetics, University of Minnesota, Saint Paul, MN, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0574-3976","authenticated-orcid":false,"given":"Cecile","family":"Monat","sequence":"additional","affiliation":[{"name":"Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Axel","family":"Himmelbach","sequence":"additional","affiliation":[{"name":"Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sudharsan","family":"Padmarasu","sequence":"additional","affiliation":[{"name":"Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Martin","family":"Mascher","sequence":"additional","affiliation":[{"name":"Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sean","family":"Walkowiak","sequence":"additional","affiliation":[{"name":"Crop Development Centre, University of Saskatchewan, Saskatoon, SK, Canada"},{"name":"Canadian Grain Commission, Grain Research Laboratory, Winnipeg, MB, Canada"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tetsuya","family":"Nakazaki","sequence":"additional","affiliation":[{"name":"Graduate School of Agriculture, Kyoto University, Kizugawa, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tomohiro","family":"Ban","sequence":"additional","affiliation":[{"name":"Kihara Institute for Biological Research, Yokohama City University, Yokohama, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kanako","family":"Kawaura","sequence":"additional","affiliation":[{"name":"Kihara Institute for Biological Research, Yokohama City University, Yokohama, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hiroyuki","family":"Tsuji","sequence":"additional","affiliation":[{"name":"Kihara Institute for Biological Research, Yokohama City University, Yokohama, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Curtis","family":"Pozniak","sequence":"additional","affiliation":[{"name":"Crop Development Centre, University of Saskatchewan, Saskatoon, SK, Canada"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Nils","family":"Stein","sequence":"additional","affiliation":[{"name":"Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland, Germany"},{"name":"Department of Crop Science, Center of Integrated Breeding Research (CiBreed), Georg-August-University, G\u00f6ttingen, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jun","family":"Sese","sequence":"additional","affiliation":[{"name":"National Institute of Advanced Industrial Science and Technology (AIST), Tokyo, Japan"},{"name":"Humanome Lab, Inc, Tokyo, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shuhei","family":"Nasuda","sequence":"additional","affiliation":[{"name":"Graduate School of Agriculture, Kyoto University, Kyoto, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2985-2883","authenticated-orcid":false,"given":"Hirokazu","family":"Handa","sequence":"additional","affiliation":[{"name":"Division of Basic Research, Institute of Crop Science, NARO, Tsukuba, Japan"},{"name":"Laboratoty of Plant Breeding, Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2020,11,27]]},"reference":[{"key":"2021040618211673700_pcaa152-B1","doi-asserted-by":"crossref","first-page":"605","DOI":"10.1038\/sj.emboj.7600950","article-title":"A divergent external loop confers antagonistic activity on floral regulators FT and TFL1","volume":"25","author":"Ahn","year":"2006","journal-title":"EMBO J."},{"key":"2021040618211673700_pcaa152-B2","doi-asserted-by":"crossref","first-page":"e46","DOI":"10.1093\/nar\/gkt1376","article-title":"Genome-wide quantification of homeolog expression ratio revealed nonstochastic gene regulation in synthetic allopolyploid Arabidopsis","volume":"42","author":"Akama","year":"2014","journal-title":"Nucleic Acids Res"},{"key":"2021040618211673700_pcaa152-B3","doi-asserted-by":"crossref","first-page":"599","DOI":"10.1534\/genetics.120.303501","article-title":"Chromosome-scale assembly of the bread wheat genome reveals thousands of additional gene copies","volume":"216","author":"Alonge","year":"2020","journal-title":"Genetics"},{"key":"2021040618211673700_pcaa152-B4","doi-asserted-by":"crossref","first-page":"3389","DOI":"10.1093\/nar\/25.17.3389","article-title":"Gapped BLAST and PSI-BLAST: a new generation of protein database search programs","volume":"25","author":"Altschul","year":"1997","journal-title":"Nucleic Acids Res"},{"key":"2021040618211673700_pcaa152-B5","doi-asserted-by":"crossref","first-page":"674","DOI":"10.2307\/2799190","article-title":"Measuring the rate of spread of early farming in Europe","volume":"6","author":"Ammerman","year":"1971","journal-title":"Man"},{"key":"2021040618211673700_pcaa152-B6","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1100\/2012\/385610","article-title":"Allelic variation at the Rht8 locus in a 19th century wheat collection","volume":"2012","author":"Asplund","year":"2012","journal-title":"Sci. World J"},{"key":"2021040618211673700_pcaa152-B7","doi-asserted-by":"crossref","first-page":"93","DOI":"10.1126\/science.aan0032","article-title":"Wild emmer genome architecture and diversity elucidate wheat evolution and domestication","volume":"357","author":"Avni","year":"2017","journal-title":"Science"},{"key":"2021040618211673700_pcaa152-B8","doi-asserted-by":"crossref","first-page":"eaav0536","DOI":"10.1126\/sciadv.aav0536","article-title":"Worldwide phylogeography and history of wheat genetic diversity","volume":"5","author":"Balfourier","year":"2019","journal-title":"Sci. Adv."},{"key":"2021040618211673700_pcaa152-B9","doi-asserted-by":"crossref","first-page":"775","DOI":"10.1080\/00438243.2014.953703","article-title":"An evaluation of competing hypotheses for the early adoption of wheat in East Asia","volume":"46","author":"Barton","year":"2014","journal-title":"World Archaeol"},{"key":"2021040618211673700_pcaa152-B10","doi-asserted-by":"crossref","first-page":"91","DOI":"10.1007\/s10681-011-0495-x","article-title":"A QTL on chromosome 2DS of \u2018Sumai 3\u2019 increases susceptibility to Fusarium head blight in wheat","volume":"186","author":"Basnet","year":"2012","journal-title":"Euphytica"},{"key":"2021040618211673700_pcaa152-B11","doi-asserted-by":"crossref","first-page":"721","DOI":"10.1007\/s00122-007-0603-4","article-title":"A Pseudo-Response Regulator is misexpressed in the photoperiod insensitive Ppd-D1a mutant of wheat (Triticum aestivum L.)","volume":"115","author":"Beales","year":"2007","journal-title":"Theor. Appl. Genet."},{"key":"2021040618211673700_pcaa152-B12","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-319-97427-9_2","volume-title":"The Maize Genome. Compendium of Plant Genomes","author":"Brohammer","year":"2018"},{"key":"2021040618211673700_pcaa152-B13","doi-asserted-by":"crossref","first-page":"513","DOI":"10.1104\/pp.113.230144","article-title":"MAKER-P: A tool kit for the rapid creation, management, and quality control of plant genome annotations","volume":"164","author":"Campbell","year":"2014","journal-title":"Plant Physiol."},{"key":"2021040618211673700_pcaa152-B14","doi-asserted-by":"crossref","first-page":"1815","DOI":"10.1007\/s00122-019-03318-z","article-title":"Dissection of two quantitative trait loci with pleiotropic effects on plant height and spike length linked in coupling phase on the short arm of chromosome 2D of common wheat (Triticum aestivum L.)","volume":"132","author":"Chai","year":"2019","journal-title":"Theor. Appl. Genet."},{"key":"2021040618211673700_pcaa152-B15","doi-asserted-by":"crossref","first-page":"1825","DOI":"10.1007\/s00122-020-03556-6","article-title":"Pleiotropic QTL influencing spikelet number and heading date in common wheat (Triticum aestivum L.)","volume":"133","author":"Chen","year":"2020","journal-title":"Theor. Appl. Genet."},{"key":"2021040618211673700_pcaa152-B16","doi-asserted-by":"crossref","first-page":"104","DOI":"10.1186\/s13059-020-01998-1","article-title":"Wheat chromatin architecture is organized in genome territories and transcription factories","volume":"21","author":"Concia","year":"2020","journal-title":"Genome Biol."},{"key":"2021040618211673700_pcaa152-B17","doi-asserted-by":"crossref","first-page":"1849","DOI":"10.1104\/pp.103.023523","article-title":"TaVRT-1, a putative transcription factor associated with vegetative to reproductive transition in cereals","volume":"132","author":"Danyluk","year":"2003","journal-title":"Plant Physiol."},{"key":"2021040618211673700_pcaa152-B18","doi-asserted-by":"crossref","first-page":"597","DOI":"10.1126\/science.1078208","article-title":"Farmers and their languages: the first expansions","volume":"300","author":"Diamond","year":"2003","journal-title":"Science"},{"key":"2021040618211673700_pcaa152-B19","doi-asserted-by":"crossref","first-page":"e33234","DOI":"10.1371\/journal.pone.0033234","article-title":"Copy number variation affecting the photoperiod-B1 and vernalization-A1 genes is associated with altered flowering time in wheat (Triticum aestivum)","volume":"7","author":"D\u00edaz","year":"2012","journal-title":"PLoS One"},{"key":"2021040618211673700_pcaa152-B20","doi-asserted-by":"crossref","first-page":"108","DOI":"10.1016\/j.quascirev.2013.04.021","article-title":"Origin and spread of wheat in China","volume":"72","author":"Dodson","year":"2013","journal-title":"Quat. Sci. Rev"},{"key":"2021040618211673700_pcaa152-B21","doi-asserted-by":"crossref","first-page":"3554","DOI":"10.3390\/ijms19113554","article-title":"One major challenge of sequencing large plant genomes is to know how big they really are","volume":"19","author":"Dole\u017eel","year":"2018","journal-title":"Int. J. Mol. Sci."},{"key":"2021040618211673700_pcaa152-B22","doi-asserted-by":"crossref","first-page":"1862","DOI":"10.1126\/science.1143986","article-title":"Genome plasticity a key factor in the success of polyploid wheat under domestication","volume":"316","author":"Dubcovsky","year":"2007","journal-title":"Science"},{"key":"2021040618211673700_pcaa152-B23","doi-asserted-by":"crossref","first-page":"1792","DOI":"10.1093\/nar\/gkh340","article-title":"MUSCLE: Multiple sequence alignment with high accuracy and high throughput","volume":"32","author":"Edgar","year":"2004","journal-title":"Nucleic Acids Res"},{"key":"2021040618211673700_pcaa152-B24","doi-asserted-by":"crossref","first-page":"483","DOI":"10.1270\/jsbbs.17048","article-title":"Genetic variation in heat tolerance-related traits in a population of wheat multiple synthetic derivatives","volume":"67","author":"Elbashir","year":"2017","journal-title":"Breed. Sci."},{"key":"2021040618211673700_pcaa152-B25","doi-asserted-by":"crossref","first-page":"eaax0025","DOI":"10.1126\/science.aax0025","article-title":"Revolutions in agriculture chart a course for targeted breeding of old and new crops","volume":"366","author":"Eshed","year":"2019","journal-title":"Science"},{"key":"2021040618211673700_pcaa152-B26","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2020.00731","article-title":"Searching for FHB resistances in bread wheat: susceptibility at the crossroad","volume":"11","author":"Fabre","year":"2020","journal-title":"Front. Plant Sci"},{"key":"2021040618211673700_pcaa152-B27","doi-asserted-by":"crossref","first-page":"599","DOI":"10.1534\/genetics.106.069500","article-title":"The FLOWERING LOCUS T-like gene family in barley (Hordeum vulgare)","volume":"176","author":"Faure","year":"2007","journal-title":"Genetics"},{"key":"2021040618211673700_pcaa152-B28","doi-asserted-by":"crossref","first-page":"39","DOI":"10.1023\/A:1019632008244","article-title":"Mapping genes for resistance to sprouting damage in wheat","volume":"126","author":"Flintham","year":"2002","journal-title":"Euphytica"},{"key":"2021040618211673700_pcaa152-B29","doi-asserted-by":"crossref","first-page":"106","DOI":"10.1186\/s13059-015-0670-9","article-title":"Split-alignment of genomes finds orthologies more accurately","volume":"16","author":"Frith","year":"2015","journal-title":"Genome Biol."},{"key":"2021040618211673700_pcaa152-B30","doi-asserted-by":"crossref","first-page":"54","DOI":"10.1007\/s00438-004-1095-4","article-title":"Large deletions within the first intron in VRN-1 are associated with spring growth habit in barley and wheat","volume":"273","author":"Fu","year":"2005","journal-title":"Mol. Genet. Genomics"},{"key":"2021040618211673700_pcaa152-B31","first-page":"48","volume-title":"Japanese History of Breeding","author":"Fujita","year":"2013"},{"key":"2021040618211673700_pcaa152-B32","doi-asserted-by":"crossref","first-page":"89","DOI":"10.1270\/jsbbs1951.35.89","article-title":"Genealogical pedigrees of Japanese wheat cultivars","volume":"35","author":"Fukunaga","year":"1985","journal-title":"Jpn. J Breed"},{"key":"2021040618211673700_pcaa152-B33","doi-asserted-by":"crossref","first-page":"135","DOI":"10.1016\/j.plantsci.2014.05.012","article-title":"Multitasking antimicrobial peptides in plant development and host defense against biotic\/abiotic stress","volume":"228","author":"Goyal","year":"2014","journal-title":"Plant Sci"},{"key":"2021040618211673700_pcaa152-B34","doi-asserted-by":"crossref","first-page":"841","DOI":"10.1111\/j.1469-8137.2009.03099.x","article-title":"Discovery, evaluation and distribution of haplotypes of the wheat Ppd-D1 gene","volume":"185","author":"Guo","year":"2010","journal-title":"New Phytol"},{"key":"2021040618211673700_pcaa152-B35","doi-asserted-by":"crossref","first-page":"5085","DOI":"10.1038\/s41467-020-18738-5","article-title":"Origin and adaptation to high altitude of Tibetan semi-wild wheat","volume":"11","author":"Guo","year":"2020","journal-title":"Nat. Commun."},{"key":"2021040618211673700_pcaa152-B36","doi-asserted-by":"crossref","first-page":"492","DOI":"10.1038\/s41477-020-0659-6","article-title":"Genomic history and ecology of the geographic spread of rice","volume":"6","author":"Gutaker","year":"2020","journal-title":"Nat. Plants"},{"key":"2021040618211673700_pcaa152-B37","doi-asserted-by":"crossref","first-page":"857","DOI":"10.3389\/fpls.2016.00857","article-title":"Systematic investigation of FLOWERING LOCUS T-like Poaceae gene families identifies the short-day expressed flowering pathway gene, TaFT3 in wheat (Triticum aestivum L.)","volume":"7","author":"Halliwell","year":"2016","journal-title":"Front. Plant Sci"},{"key":"2021040618211673700_pcaa152-B38","doi-asserted-by":"crossref","first-page":"71","DOI":"10.1007\/s11032-008-9157-7","article-title":"Dissecting of the FHB resistance QTL on the short arm of wheat chromosome 2D using a comparative genomic approach: From QTL to candidate gene","volume":"22","author":"Handa","year":"2008","journal-title":"Mol. Breeding"},{"key":"2021040618211673700_pcaa152-B39","doi-asserted-by":"crossref","first-page":"39","DOI":"10.1093\/dnares\/dsx036","article-title":"Multiple hybrid de novo genome assembly of finger millet, an orphan allotetraploid crop","volume":"25","author":"Hatakeyama","year":"2018","journal-title":"DNA Res"},{"key":"2021040618211673700_pcaa152-B40","doi-asserted-by":"crossref","first-page":"17137","DOI":"10.1073\/pnas.1307617110","article-title":"The gated induction system of a systemic floral inhibitor, antiflorigen, determines obligate short-day flowering in chrysanthemums","volume":"110","author":"Higuchi","year":"2013","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"2021040618211673700_pcaa152-B41","doi-asserted-by":"crossref","first-page":"1561","DOI":"10.1007\/s00122-011-1555-2","article-title":"Development of PCR markers for Tamyb10 related to R-1, red grain color gene in wheat","volume":"122","author":"Himi","year":"2011","journal-title":"Theor. Appl. Genet."},{"key":"2021040618211673700_pcaa152-B42","doi-asserted-by":"crossref","first-page":"1569","DOI":"10.1093\/jxb\/erf005","article-title":"Effect of grain colour gene (R) on grain dormancy and sensitivity of the embryo to abscisic acid (ABA) in wheat","volume":"53","author":"Himi","year":"2002","journal-title":"J. Exp. Bot"},{"key":"2021040618211673700_pcaa152-B43","doi-asserted-by":"crossref","first-page":"239","DOI":"10.1007\/s10681-005-7854-4","article-title":"Red grain colour gene (R) of wheat is a Myb-type transcription factor","volume":"143","author":"Himi","year":"2005","journal-title":"Euphytica"},{"key":"2021040618211673700_pcaa152-B44","first-page":"e2955","article-title":"Tethered chromosome conformation capture sequencing in Triticeae: a valuable tool for genome assembly","volume":"8","author":"Himmelbach","year":"2018","journal-title":"Bioprotocol"},{"key":"2021040618211673700_pcaa152-B45","article-title":"Homoeologous gene expression and co-expression network analyses and evolutionary inference in allopolyploids","author":"Hu","year":"2020","journal-title":"Brief Bioinform"},{"key":"2021040618211673700_pcaa152-B46","doi-asserted-by":"crossref","first-page":"417","DOI":"10.1038\/s41437-020-0320-1","article-title":"Phenology and related traits for wheat adaptation","volume":"125","author":"Hyles","year":"2020","journal-title":"Heredity"},{"key":"2021040618211673700_pcaa152-B47","doi-asserted-by":"crossref","first-page":"680","DOI":"10.1007\/s001220100756","article-title":"Identification of new low-molecular-weight glutenin subunit genes in wheat","volume":"104","author":"Ikeda","year":"2002","journal-title":"Theor. Appl. Genet."},{"key":"2021040618211673700_pcaa152-B48","first-page":"1","article-title":"Recent progress and future tasks in wheat breeding at Kanto, Tokai and western Japan","volume":"55","author":"Ishikawa","year":"2010","journal-title":"J. Crop Res"},{"key":"2021040618211673700_pcaa152-B49","doi-asserted-by":"crossref","first-page":"51","DOI":"10.3389\/fpls.2019.00051","article-title":"The impact of the wheat Rht-B1b semi-dwarfing allele on photosynthesis and seed development under field conditions","volume":"10","author":"Jobson","year":"2019","journal-title":"Front. Plant Sci"},{"key":"2021040618211673700_pcaa152-B50","doi-asserted-by":"crossref","first-page":"275","DOI":"10.1093\/bioinformatics\/8.3.275","article-title":"The rapid generation of mutation data matrices from protein sequences","volume":"8","author":"Jones","year":"1992","journal-title":"Bioinformatics"},{"key":"2021040618211673700_pcaa152-B51","doi-asserted-by":"crossref","first-page":"2354","DOI":"10.1104\/pp.105.061762","article-title":"TaVRT-2, a member of the StMADS-11 clade of flowering repressors, is regulated by vernalization and photoperiod in wheat","volume":"138","author":"Kane","year":"2005","journal-title":"Plant Physiol."},{"key":"2021040618211673700_pcaa152-B52","doi-asserted-by":"crossref","first-page":"54","DOI":"10.1626\/pps.12.54","article-title":"Response spectrum for green light-induced acceleration of heading in wheat cv. Norin 61","volume":"12","author":"Kasajima","year":"2009","journal-title":"Plant Prod. Sci"},{"key":"2021040618211673700_pcaa152-B53","first-page":"113","volume-title":"Mugi No Shizenshi","author":"Kato","year":"2000"},{"key":"2021040618211673700_pcaa152-B54","first-page":"889","article-title":"Discovery of the DD-analyser, one of the ancestors of Triticum vulgare (abstr)","volume":"19","author":"Kihara","year":"1944","journal-title":"Agric. Hortic"},{"key":"2021040618211673700_pcaa152-B55","doi-asserted-by":"crossref","first-page":"1341","DOI":"10.1104\/pp.108.132134","article-title":"Molecular and functional characterization of PEBP genes in barley reveal the diversification of their roles in flowering","volume":"149","author":"Kikuchi","year":"2009","journal-title":"Plant Physiol."},{"key":"2021040618211673700_pcaa152-B56","doi-asserted-by":"crossref","first-page":"907","DOI":"10.1038\/s41587-019-0201-4","article-title":"Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype","volume":"37","author":"Kim","year":"2019","journal-title":"Nat. Biotechnol."},{"key":"2021040618211673700_pcaa152-B57","doi-asserted-by":"crossref","first-page":"111","DOI":"10.1007\/BF01731581","article-title":"A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences","volume":"16","author":"Kimura","year":"1980","journal-title":"J. Mol. Evol."},{"key":"2021040618211673700_pcaa152-B58","doi-asserted-by":"crossref","first-page":"213","DOI":"10.1270\/jsbbs.66.213","article-title":"Characterization of a mini core collection of Japanese wheat varieties using single-nucleotide polymorphisms generated by genotyping-by-sequencing","volume":"66","author":"Kobayashi","year":"2016","journal-title":"Breed. Sci."},{"key":"2021040618211673700_pcaa152-B59","first-page":"1","article-title":"Development and evaluation of the core collection of Japanese wheat varieties","volume":"1","author":"Kojima","year":"2017","journal-title":"Bull. NARO Crop Sci"},{"key":"2021040618211673700_pcaa152-B60","doi-asserted-by":"crossref","first-page":"131","DOI":"10.1139\/gen-2013-0003","article-title":"Genomic and chromosomal distribution patterns of various repeated DNA sequences in wheat revealed by a fluorescence in situ hybridization procedure","volume":"56","author":"Komuro","year":"2013","journal-title":"Genome"},{"key":"2021040618211673700_pcaa152-B61","doi-asserted-by":"crossref","first-page":"1104","DOI":"10.1007\/s001220050845","article-title":"Genetic analysis of the dwarfing gene (Rht8) in wheat. Part I. Molecular mapping of Rht8 on the short arm of chromosome 2D of bread wheat (Triticum aestivum L.)","volume":"96","author":"Korzun","year":"1998","journal-title":"Theor. Appl. Genet"},{"key":"2021040618211673700_pcaa152-B62","doi-asserted-by":"crossref","first-page":"1026","DOI":"10.1093\/bioinformatics\/btm039","article-title":"Gepard: A rapid and sensitive tool for creating dotplots on genome scale","volume":"23","author":"Krumsiek","year":"2007","journal-title":"Bioinformatics"},{"key":"2021040618211673700_pcaa152-B63","doi-asserted-by":"crossref","first-page":"1547","DOI":"10.1093\/molbev\/msy096","article-title":"MEGA X: Molecular evolutionary genetics analysis across computing platforms","volume":"35","author":"Kumar","year":"2018","journal-title":"Mol. Biol. Evol"},{"key":"2021040618211673700_pcaa152-B64","doi-asserted-by":"crossref","first-page":"395","DOI":"10.1093\/bib\/bby121","article-title":"Homeolog expression quantification methods for allopolyploids","volume":"21","author":"Kuo","year":"2020","journal-title":"Brief Bioinform"},{"key":"2021040618211673700_pcaa152-B65","doi-asserted-by":"crossref","first-page":"R12","DOI":"10.1186\/gb-2004-5-2-r12","article-title":"Versatile and open software for comparing large genomes","volume":"5","author":"Kurtz","year":"2004","journal-title":"Genome Biol."},{"key":"2021040618211673700_pcaa152-B66","doi-asserted-by":"crossref","first-page":"592","DOI":"10.1007\/BF00289125","article-title":"Phylogenetic relationships of Triticum tauschii the D genome donor to hexaploid wheat","volume":"75","author":"Lagudah","year":"1988","journal-title":"Theor. Appl. Genet."},{"key":"2021040618211673700_pcaa152-B67","doi-asserted-by":"crossref","first-page":"481","DOI":"10.1126\/science.1153585","article-title":"Genomic plasticity and the diversity of polyploid plants","volume":"320","author":"Leitch","year":"2008","journal-title":"Science"},{"key":"2021040618211673700_pcaa152-B68","doi-asserted-by":"crossref","first-page":"1106","DOI":"10.1038\/s41588-019-0426-7","article-title":"Mutation of a histidine-rich calcium-binding-protein gene in wheat confers resistance to Fusarium head blight","volume":"51","author":"Li","year":"2019","journal-title":"Nat. Genet."},{"key":"2021040618211673700_pcaa152-B69","doi-asserted-by":"crossref","first-page":"2987","DOI":"10.1093\/bioinformatics\/btr509","article-title":"A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data","volume":"27","author":"Li","year":"2011","journal-title":"Bioinformatics"},{"key":"2021040618211673700_pcaa152-B70","doi-asserted-by":"crossref","first-page":"3094","DOI":"10.1093\/bioinformatics\/bty191","article-title":"Minimap2: Pairwise alignment for nucleotide sequences","volume":"34","author":"Li","year":"2018","journal-title":"Bioinformatics"},{"key":"2021040618211673700_pcaa152-B71","doi-asserted-by":"crossref","first-page":"2078","DOI":"10.1093\/bioinformatics\/btp352","article-title":"The sequence alignment\/map format and SAMtools","volume":"25","author":"Li","year":"2009","journal-title":"Bioinformatics"},{"key":"2021040618211673700_pcaa152-B72","doi-asserted-by":"crossref","first-page":"555","DOI":"10.1177\/0959683607078978","article-title":"Early cultivated wheat and broadening of agriculture in Neolithic China","volume":"17","author":"Li","year":"2007","journal-title":"Holocene"},{"key":"2021040618211673700_pcaa152-B73","doi-asserted-by":"crossref","first-page":"289","DOI":"10.1126\/science.1181369","article-title":"Comprehensive mapping of long-range interactions reveals folding principles of the human genome","volume":"326","author":"Lieberman-Aiden","year":"2009","journal-title":"Science"},{"key":"2021040618211673700_pcaa152-B74","doi-asserted-by":"crossref","first-page":"794","DOI":"10.1186\/s12864-016-3148-6","article-title":"Genome-wide association analysis on pre-harvest sprouting resistance and grain color in U.S. winter wheat","volume":"17","author":"Lin","year":"2016","journal-title":"BMC Genomics"},{"key":"2021040618211673700_pcaa152-B75","doi-asserted-by":"crossref","first-page":"82","DOI":"10.1016\/j.cj.2017.08.009","article-title":"Wheat breeding in the hometown of Chinese Spring","volume":"6","author":"Liu","year":"2018","journal-title":"Crop J"},{"key":"2021040618211673700_pcaa152-B76","doi-asserted-by":"crossref","first-page":"213","DOI":"10.1006\/jcrs.1996.0022","article-title":"Molecular and biochemical characterisation of HMW glutenin subunits from T. tauschii and the D genome of hexaploid wheat","volume":"23","author":"Mackie","year":"1996","journal-title":"J. Cereal Sci"},{"key":"2021040618211673700_pcaa152-B77","doi-asserted-by":"crossref","first-page":"574","DOI":"10.1093\/bioinformatics\/btw663","article-title":"KAT: A K-mer analysis toolkit to quality control NGS datasets and genome assemblies","volume":"33","author":"Mapleson","year":"2017","journal-title":"Bioinformatics"},{"key":"2021040618211673700_pcaa152-B78","doi-asserted-by":"crossref","first-page":"427","DOI":"10.1038\/nature22043","article-title":"A chromosome conformation capture ordered sequence of the barley genome","volume":"544","author":"Mascher","year":"2017","journal-title":"Nature"},{"key":"2021040618211673700_pcaa152-B79","doi-asserted-by":"crossref","first-page":"4431","DOI":"10.1111\/j.1742-4658.2005.04858.x","article-title":"Molecular cloning, recombinant expression and IgE-binding epitope of omega-5 gliadin, a major allergen in wheat-dependent exercise-induced anaphylaxis","volume":"272","author":"Matsuo","year":"2005","journal-title":"FEBS J"},{"key":"2021040618211673700_pcaa152-B80","doi-asserted-by":"crossref","first-page":"750","DOI":"10.1093\/pcp\/pcr018","article-title":"Evolution of polyploid Triticum wheats under cultivation: The role of domestication, natural hybridization and allopolyploid speciation in their diversification","volume":"52","author":"Matsuoka","year":"2011","journal-title":"Plant Cell Physiol"},{"key":"2021040618211673700_pcaa152-B81","doi-asserted-by":"crossref","first-page":"1257","DOI":"10.1126\/science.1207205","article-title":"Recently formed polyploid plants diversify at lower rates","volume":"333","author":"Mayrose","year":"2011","journal-title":"Science"},{"key":"2021040618211673700_pcaa152-B82","first-page":"26","article-title":"The artificial synthesis of Triticum spelta","volume":"13","author":"McFadden","year":"1944","journal-title":"Rec. Genet. Soc. Am"},{"key":"2021040618211673700_pcaa152-B83","first-page":"74","author":"McIntosh","year":"2013"},{"key":"2021040618211673700_pcaa152-B84","doi-asserted-by":"crossref","first-page":"221","DOI":"10.1007\/s00497-002-0158-0","article-title":"WAG, a wheat AGAMOUS homolgo, is associated with development of pistil-like stamens in alloplasmic wheat","volume":"15","author":"Meguro","year":"2003","journal-title":"Sex. Plant Reprod."},{"key":"2021040618211673700_pcaa152-B85","doi-asserted-by":"crossref","first-page":"62","DOI":"10.1626\/jcs.79.62","article-title":"Effects of climatic conditions on the yield of wheat variety \u2018Norin 61\u2019 in the experimental upland field in Saitama Prefecture","volume":"79","author":"Minoda","year":"2010","journal-title":"Jpn. J. Crop Sci."},{"key":"2021040618211673700_pcaa152-B86","doi-asserted-by":"crossref","first-page":"392","DOI":"10.1111\/j.1439-0523.1995.tb00818.x","article-title":"Yield, biomass and yield components in dwarf, semi-dwarf and tall isogenic lines of spring wheat under recommended and late sowing dates","volume":"114","author":"Miralles","year":"1995","journal-title":"Plant Breed"},{"key":"2021040618211673700_pcaa152-B87","doi-asserted-by":"crossref","first-page":"357","DOI":"10.1266\/ggs.87.357","article-title":"A wheat homologue of PHYTOCLOCK1 is a candidate gene conferring the early heading ohenotype to einkorn wheat","volume":"87","author":"Mizuno","year":"2012","journal-title":"Genes Genet. Syst."},{"key":"2021040618211673700_pcaa152-B88","doi-asserted-by":"crossref","first-page":"e0165618","DOI":"10.1371\/journal.pone.0165618","article-title":"Loss-of-function mutations in three homoeologous PHYTOCLOCK1 genes in common wheat are associated with the extra-early flowering phenotype","volume":"11","author":"Mizuno","year":"2016","journal-title":"PLoS One"},{"key":"2021040618211673700_pcaa152-B89","doi-asserted-by":"crossref","first-page":"284","DOI":"10.1186\/s13059-019-1899-5","article-title":"TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools","volume":"20","author":"Monat","year":"2019","journal-title":"Genome Biol."},{"key":"2021040618211673700_pcaa152-B90","doi-asserted-by":"crossref","first-page":"1255","DOI":"10.1093\/pcp\/pcg171","article-title":"WAP1, a wheat APETALA1 homolog, plays a central role in the phase transition from vegetative to reproductive growth","volume":"44","author":"Murai","year":"2003","journal-title":"Plant Cell Physiol"},{"key":"2021040618211673700_pcaa152-B91","doi-asserted-by":"crossref","first-page":"111","DOI":"10.1266\/ggs.18-00010","article-title":"Cytological observation of chromosome breakage in wheat male gametophytes caused by gametocidal action of Aegilops triuncialis-derived chromosome 3Ct","volume":"93","author":"Murata","year":"2018","journal-title":"Genes Genet. Syst."},{"key":"2021040618211673700_pcaa152-B92","doi-asserted-by":"crossref","first-page":"131","DOI":"10.1023\/A:1003516620466","article-title":"Allelic variation in high-molecular-weight glutenin subunit Loci of Glu-1 in Japanese common wheats","volume":"106","author":"Nakamura","year":"1999","journal-title":"Euphytica"},{"key":"2021040618211673700_pcaa152-B93","doi-asserted-by":"crossref","first-page":"82","DOI":"10.1046\/j.1365-313X.2003.01859.x","article-title":"Characterization and functional analysis of three wheat genes with homology to the CONSTANS flowering time gene in transgenic rice","volume":"36","author":"Nemoto","year":"2003","journal-title":"Plant J"},{"key":"2021040618211673700_pcaa152-B94","doi-asserted-by":"crossref","first-page":"1273","DOI":"10.1007\/s00122-013-2052-6","article-title":"Structure, transcription and post-transcriptional regulation of the bread wheat orthologs of the barley cleistogamy gene Cly1","volume":"126","author":"Ning","year":"2013","journal-title":"Theor. Appl. Genet."},{"key":"2021040618211673700_pcaa152-B95","doi-asserted-by":"crossref","first-page":"27","DOI":"10.1007\/s11032-012-9765-0","article-title":"Structural variation in the 5\u2032 upstream region of photoperiod-insensitive alleles Ppd-A1a and Ppd-B1a identified in hexaploid wheat (Triticum aestivum L.), and their effect on heading time","volume":"31","author":"Nishida","year":"2013","journal-title":"Mol. Breed."},{"key":"2021040618211673700_pcaa152-B96","doi-asserted-by":"crossref","first-page":"2037","DOI":"10.1007\/s00122-018-3131-5","article-title":"The early flowering trait of an emmer wheat accession (Triticum turgidum L. ssp. dicoccum) is associated with the cis-element of the Vrn-A3 locus","volume":"131","author":"Nishimura","year":"2018","journal-title":"Theor. Appl. Genet."},{"key":"2021040618211673700_pcaa152-B97","doi-asserted-by":"crossref","first-page":"4","DOI":"10.1186\/s40066-017-0139-z","article-title":"Tracking haplotype for QTLs associated with Fusarium head blight resistance in Japanese wheat (Triticum aestivum L.) lineage","volume":"7","author":"Niwa","year":"2018","journal-title":"Agric. Food Secur"},{"key":"2021040618211673700_pcaa152-B98","first-page":"41","volume-title":"History of Crop Breeding","author":"Ohta","year":"2010"},{"key":"2021040618211673700_pcaa152-B99","doi-asserted-by":"crossref","first-page":"3909","DOI":"10.1038\/s41467-018-06108-1","article-title":"Patterns of polymorphism and selection in the subgenomes of the allopolyploid Arabidopsis kamchatica","volume":"9","author":"Paape","year":"2018","journal-title":"Nat. Commun."},{"key":"2021040618211673700_pcaa152-B100","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1016\/S0733-5210(83)80003-4","article-title":"Detection of a novel high molecular weight subunit of glutenin in some Japanese hexaploid wheats","volume":"1","author":"Payne","year":"1983","journal-title":"J. Cereal Sci"},{"key":"2021040618211673700_pcaa152-B101","first-page":"29","article-title":"Catalogue of alleles for the complex gene loci, Glu-A1, Glu-B1, and Glu-D1 which code for high-molecular-weight subunits of glutenin in hexaploid wheat","volume":"11","author":"Payne","year":"1983","journal-title":"Cereal Res. Commun"},{"key":"2021040618211673700_pcaa152-B102","doi-asserted-by":"crossref","first-page":"256","DOI":"10.1038\/22307","article-title":"Green revolution\u2019 genes encode mutant gibberellin response modulators","volume":"400","author":"Peng","year":"1999","journal-title":"Nature"},{"key":"2021040618211673700_pcaa152-B103","doi-asserted-by":"crossref","first-page":"841","DOI":"10.1093\/bioinformatics\/btq033","article-title":"BEDTools: a flexible suite of utilities for comparing genomic features","volume":"26","author":"Quinlan","year":"2010","journal-title":"Bioinformatics"},{"key":"2021040618211673700_pcaa152-B104","doi-asserted-by":"crossref","first-page":"1576","DOI":"10.1038\/ng.3706","article-title":"Wheat Fhb1 encodes a chimeric lectin with agglutinin domains and a pore-forming toxin-like domain conferring resistance to Fusarium head blight","volume":"48","author":"Rawat","year":"2016","journal-title":"Nat. Genet."},{"key":"2021040618211673700_pcaa152-B105","doi-asserted-by":"crossref","first-page":"292","DOI":"10.1016\/j.jcs.2010.01.003","article-title":"Characterization of a novel wheat (Triticum aestivum L.) mutant with reduced seed dormancy","volume":"51","author":"Rikiishi","year":"2010","journal-title":"J. Cereal Sci"},{"key":"2021040618211673700_pcaa152-B106","doi-asserted-by":"crossref","first-page":"74","DOI":"10.3390\/plants7030074","article-title":"Primary structure analysis of antifungal peptides from cultivated and wild cereals","volume":"7","author":"Rogozhin","year":"2018","journal-title":"Plants"},{"key":"2021040618211673700_pcaa152-B107","doi-asserted-by":"crossref","first-page":"775","DOI":"10.1093\/pcp\/pcr046","article-title":"Natural variation of barley vernalization requirements: Implication of quantitative variation of winter growth habit as an adaptive trait in East Asia","volume":"52","author":"Saisho","year":"2011","journal-title":"Plant Cell Physiol"},{"key":"2021040618211673700_pcaa152-B108","doi-asserted-by":"crossref","first-page":"1765","DOI":"10.1534\/genetics.107.079491","article-title":"Molecular phylogeography of domesticated barley traces expansion of agriculture in the old world","volume":"177","author":"Saisho","year":"2007","journal-title":"Genetics"},{"key":"2021040618211673700_pcaa152-B109","doi-asserted-by":"crossref","first-page":"4572","DOI":"10.1038\/s41467-020-18404-w","article-title":"Diversity analysis of 80,000 wheat accessions reveals consequences and opportunities of selection footprints","volume":"11","author":"Sansaloni","year":"2020","journal-title":"Nat. Commun."},{"key":"2021040618211673700_pcaa152-B110","doi-asserted-by":"crossref","first-page":"607","DOI":"10.1038\/hdy.1983.73","article-title":"The location of the photoperiod gene, Ppd2 and an additional genetic factor for ear-emergence time on chromosome 2B of wheat","volume":"51","author":"Scarth","year":"1983","journal-title":"Heredity"},{"key":"2021040618211673700_pcaa152-B111","doi-asserted-by":"crossref","first-page":"676","DOI":"10.1038\/nmeth.2019","article-title":"Fiji: an open-source platform for biological-image analysis","volume":"9","author":"Schindelin","year":"2012","journal-title":"Nat. Methods"},{"key":"2021040618211673700_pcaa152-B112","doi-asserted-by":"crossref","first-page":"140","DOI":"10.1186\/s13059-018-1528-8","article-title":"Genomic approaches for studying crop evolution","volume":"19","author":"Schreiber","year":"2018","journal-title":"Genome Biol."},{"key":"2021040618211673700_pcaa152-B113","doi-asserted-by":"crossref","first-page":"1607","DOI":"10.1007\/s00122-016-2727-x","article-title":"Suppressed recombination and unique candidate genes in the divergent haplotype encoding Fhb1, a major Fusarium head blight resistance locus in wheat","volume":"129","author":"Schweiger","year":"2016","journal-title":"Theor. Appl. Genet."},{"key":"2021040618211673700_pcaa152-B114","doi-asserted-by":"crossref","first-page":"405","DOI":"10.1270\/jsbbs.61.405","article-title":"Distribution of photoperiod-insensitive alleles Ppd-B1a and Ppd-D1a and their effect on heading time in Japanese wheat cultivars","volume":"61","author":"Seki","year":"2011","journal-title":"Breed. Sci."},{"key":"2021040618211673700_pcaa152-B115","doi-asserted-by":"crossref","first-page":"309","DOI":"10.1270\/jsbbs.63.309","article-title":"Distribution of photoperiod-insensitive allele Ppd-A1a and its effect on heading time in Japanese wheat cultivars","volume":"63","author":"Seki","year":"2013","journal-title":"Breed. Sci."},{"key":"2021040618211673700_pcaa152-B116","doi-asserted-by":"crossref","first-page":"941","DOI":"10.1016\/j.plaphy.2008.06.011","article-title":"Plant pathogenesis-related (PR) proteins: a focus on PR peptides","volume":"46","author":"Sels","year":"2008","journal-title":"Plant Physiol. Biochem"},{"key":"2021040618211673700_pcaa152-B117","doi-asserted-by":"crossref","first-page":"227","DOI":"10.1007\/978-1-4939-9173-0_14","article-title":"BUSCO: assessing genome assembly and annotation completeness","volume":"1962","author":"Seppey","year":"2019","journal-title":"Methods Mol. Biol"},{"key":"2021040618211673700_pcaa152-B118","doi-asserted-by":"crossref","first-page":"1301","DOI":"10.1104\/pp.16.01161","article-title":"A flowering locus C homolog is a vernalization-regulated repressor in Brachypodium and is cold regulated in wheat","volume":"173","author":"Sharma","year":"2017","journal-title":"Plant Physiol."},{"key":"2021040618211673700_pcaa152-B119","doi-asserted-by":"crossref","first-page":"668","DOI":"10.1111\/j.1365-313X.2009.03806.x","article-title":"A genetic network of flowering-time genes in wheat leaves, in which an APETALA1\/FRUITFULL-like gene, VRN1, is upstream of FLOWERING LOCUS T","volume":"58","author":"Shimada","year":"2009","journal-title":"Plant J"},{"key":"2021040618211673700_pcaa152-B120","doi-asserted-by":"crossref","first-page":"1723","DOI":"10.1105\/tpc.107.051813","article-title":"Genetic and epigenetic alteration among three homeologous genes of a class E MADS box gene in hexaploid wheat","volume":"19","author":"Shitsukawa","year":"2007","journal-title":"Plant Cell"},{"key":"2021040618211673700_pcaa152-B121","doi-asserted-by":"crossref","first-page":"1370","DOI":"10.1007\/s00018-005-5574-5","article-title":"Plant thionins\u2014the structural perspective","volume":"63","author":"Stec","year":"2006","journal-title":"Cell. Mol. Life Sci."},{"key":"2021040618211673700_pcaa152-B122","doi-asserted-by":"crossref","first-page":"152","DOI":"10.1163\/22105832-00702001","article-title":"The spread of agriculture in eastern Asia","volume":"7","author":"Stevens","year":"2017","journal-title":"Lang. Dyn. Change"},{"key":"2021040618211673700_pcaa152-B123","volume-title":"An Introduction to Molecular Anthropology","author":"Stoneking","year":"2016"},{"key":"2021040618211673700_pcaa152-B124","doi-asserted-by":"crossref","first-page":"1099","DOI":"10.1038\/s41588-019-0425-8","article-title":"A deletion mutation in TaHRC confers Fhb1 resistance to Fusarium head blight in wheat","volume":"51","author":"Su","year":"2019","journal-title":"Nat. Genet."},{"key":"2021040618211673700_pcaa152-B125","doi-asserted-by":"crossref","first-page":"237","DOI":"10.1266\/ggs.18-00041","article-title":"Population structure and association analyses of the core collection of hexaploid accessions conserved ex situ in the Japanese gene bank NBRP-Wheat","volume":"93","author":"Takenaka","year":"2018","journal-title":"Genes Genet. Syst."},{"key":"2021040618211673700_pcaa152-B126","doi-asserted-by":"crossref","first-page":"313","DOI":"10.1007\/s13353-014-0215-z","article-title":"Oligonucleotides replacing the roles of repetitive sequences pAs1, pSc119.2, pTa-535, pTa71, CCS1, and pAWRC.1 for FISH analysis","volume":"55","author":"Tang","year":"2014","journal-title":"J. Appl. Genetics"},{"key":"2021040618211673700_pcaa152-B127","doi-asserted-by":"crossref","first-page":"327","DOI":"10.1270\/jsbbs.55.327","article-title":"Genetic analysis of photoperiod response in wheat and its relation with the earliness of heading in the southwestern part of Japan","volume":"55","author":"Tanio","year":"2005","journal-title":"Breed. Sci."},{"key":"2021040618211673700_pcaa152-B128","first-page":"15","article-title":"Effect of air temperature, sunshine and precipitation on the yield and other agronomic characteristics of wheat cultivar \u2018Norin 61\u2019","volume":"48","author":"Taya","year":"1981","journal-title":"Nihon Sakumotsu Gakkai Kyushu Shibu Kaiho"},{"key":"2021040618211673700_pcaa152-B129","first-page":"6194","article-title":"A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome","volume":"345","year":"2014","journal-title":"Science"},{"key":"2021040618211673700_pcaa152-B130","doi-asserted-by":"crossref","first-page":"eaar7191","DOI":"10.1126\/science.aar7191","article-title":"Shifting the limits in wheat research and breeding using a fully annotated reference genome","volume":"361","year":"2018","journal-title":"Science"},{"key":"2021040618211673700_pcaa152-B131","doi-asserted-by":"crossref","first-page":"26","DOI":"10.1104\/pp.111.187161","article-title":"Chromosome organization and dynamics during interphase, mitosis, and meiosis in plants","volume":"158","author":"Tiang","year":"2012","journal-title":"Plant Physiol."},{"key":"2021040618211673700_pcaa152-B132","doi-asserted-by":"crossref","first-page":"1031","DOI":"10.1126\/science.1117619","article-title":"The pseudo-response regulator Ppd-H1 provides adaptation to photoperiod in barley","volume":"310","author":"Turner","year":"2005","journal-title":"Science"},{"key":"2021040618211673700_pcaa152-B133","doi-asserted-by":"crossref","first-page":"1088","DOI":"10.1073\/pnas.1013011108","article-title":"Genetic signals of origin, spread, and introgression in a large sample of maize landraces","volume":"108","author":"van Heerwaarden","year":"2011","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"2021040618211673700_pcaa152-B134","doi-asserted-by":"crossref","first-page":"180","DOI":"10.1016\/j.plantsci.2019.01.004","article-title":"Review: revealing the genetic mechanisms of pre-harvest sprouting in hexaploid wheat (Triticum aestivum L.)","volume":"281","author":"Vetch","year":"2019","journal-title":"Plant Sci"},{"key":"2021040618211673700_pcaa152-B135","doi-asserted-by":"crossref","first-page":"277","DOI":"10.1038\/s41586-020-2961-x","article-title":"Multiple wheat genomes reveal global variation in modern breeding","volume":"588","author":"Walkowiak","year":"2020","journal-title":"Nature"},{"key":"2021040618211673700_pcaa152-B136","doi-asserted-by":"crossref","first-page":"1183","DOI":"10.1007\/s00122-005-0051-y","article-title":"Comparative analysis of the D genome-encoded high-molecular weight subunits of glutenin","volume":"111","author":"Wan","year":"2005","journal-title":"Theor. Appl. Genet."},{"key":"2021040618211673700_pcaa152-B137","doi-asserted-by":"crossref","first-page":"43","DOI":"10.1038\/s41586-018-0063-9","article-title":"Genomic variation in 3,010 diverse accessions of Asian cultivated rice","volume":"557","author":"Wang","year":"2018","journal-title":"Nature"},{"key":"2021040618211673700_pcaa152-B138","doi-asserted-by":"crossref","first-page":"51","DOI":"10.1017\/S0960258500000064","article-title":"Dormancy in white-grain mutants of Chinese Spring wheat (Triticum aestivum L.)","volume":"10","author":"Warner","year":"2000","journal-title":"Seed Sci. Res."},{"key":"2021040618211673700_pcaa152-B139","first-page":"879","author":"Welsh","year":"1973"},{"key":"2021040618211673700_pcaa152-B140","doi-asserted-by":"crossref","first-page":"257","DOI":"10.1007\/BF00223774","article-title":"Seed protein and isozyme variations in Triticum tauschii (Aegilops squarrosa)","volume":"87","author":"William","year":"1993","journal-title":"Theoret. Appl. Genetics"},{"key":"2021040618211673700_pcaa152-B141","doi-asserted-by":"crossref","first-page":"13875","DOI":"10.1073\/pnas.0811575106","article-title":"The frequency of polyploid speciation in vascular plants","volume":"106","author":"Wood","year":"2009","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"2021040618211673700_pcaa152-B142","doi-asserted-by":"crossref","first-page":"49","DOI":"10.1007\/BF00015718","article-title":"The influence of flowering time genes on environmental adaptability in European wheats","volume":"89","author":"Worland","year":"1996","journal-title":"Euphytica"},{"key":"2021040618211673700_pcaa152-B143","doi-asserted-by":"crossref","first-page":"4572","DOI":"10.1038\/ncomms5572","article-title":"O-GlcNAc-mediated interaction between VER2 and TaGRP2 elicits TaVRN1 mRNA accumulation during vernalization in winter wheat","volume":"5","author":"Xiao","year":"2014","journal-title":"Nat. Commun."},{"key":"2021040618211673700_pcaa152-B144","doi-asserted-by":"crossref","first-page":"6263","DOI":"10.1073\/pnas.0937399100","article-title":"Positional cloning of the wheat vernalization gene VRN1","volume":"100","author":"Yan","year":"2003","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"2021040618211673700_pcaa152-B145","doi-asserted-by":"crossref","first-page":"1640","DOI":"10.1126\/science.1094305","article-title":"The wheat VRN2 gene is a flowering repressor down-regulated by vernalization","volume":"303","author":"Yan","year":"2004","journal-title":"Science"},{"key":"2021040618211673700_pcaa152-B146","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1626\/jcs.85.403","article-title":"Effects of the composition of glutenin subunits at Glu-A1 and Glu-D1 loci on the protein composition in Japanese soft wheat","volume":"85","author":"Yanaka","year":"2016","journal-title":"Jpn. J. Crop Sci"},{"key":"2021040618211673700_pcaa152-B147","doi-asserted-by":"crossref","first-page":"445","DOI":"10.1007\/s10681-008-9745-y","article-title":"Distribution of the photoperiod insensitive Ppd-D1a allele in Chinese wheat cultivars","volume":"165","author":"Yang","year":"2009","journal-title":"Euphytica"},{"key":"2021040618211673700_pcaa152-B148","doi-asserted-by":"crossref","first-page":"53","DOI":"10.1007\/s11103-005-4162-2","article-title":"The wheat TaGI1, involved in ohotoperiodic flowering, encodes an Arabidopsis GI ortholog","volume":"58","author":"Zhao","year":"2005","journal-title":"Plant Mol. Biol."},{"key":"2021040618211673700_pcaa152-B149","doi-asserted-by":"crossref","first-page":"522","DOI":"10.1270\/jsbbs.16011","article-title":"Cytological identification of an Aegilops variabilis chromosome carrying stripe rust resistance in wheat","volume":"66","author":"Zhao","year":"2016","journal-title":"Breed. Sci."},{"key":"2021040618211673700_pcaa152-B150","doi-asserted-by":"crossref","first-page":"334","DOI":"10.1007\/s00438-006-0147-3","article-title":"Characterization and expression of 42 MADS-box genes in wheat (Triticum aestivum L.)","volume":"276","author":"Zhao","year":"2006","journal-title":"Mol. Gen. Genomics"},{"key":"2021040618211673700_pcaa152-B151","doi-asserted-by":"crossref","first-page":"1412","DOI":"10.1038\/s41588-020-00722-w","article-title":"Triticum population sequencing provides insights into wheat adaptation","volume":"52","author":"Zhou","year":"2020","journal-title":"Nat. Genet"},{"key":"2021040618211673700_pcaa152-B152","doi-asserted-by":"crossref","first-page":"357","DOI":"10.1016\/0022-5193(65)90083-4","article-title":"Molecules as documents of evolutionary history","volume":"8","author":"Zuckerkandl","year":"1965","journal-title":"J. Theor. Biol"}],"container-title":["Plant and Cell Physiology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/pcp\/advance-article-pdf\/doi\/10.1093\/pcp\/pcaa152\/34551179\/pcaa152.pdf","content-type":"application\/pdf","content-version":"am","intended-application":"syndication"},{"URL":"http:\/\/academic.oup.com\/pcp\/article-pdf\/62\/1\/8\/36895788\/pcaa152.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"http:\/\/academic.oup.com\/pcp\/article-pdf\/62\/1\/8\/36895788\/pcaa152.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,10,13]],"date-time":"2023-10-13T10:51:25Z","timestamp":1697194285000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/pcp\/article\/62\/1\/8\/6006781"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2020,11,27]]},"references-count":152,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2020,11,27]]},"published-print":{"date-parts":[[2021,3,25]]}},"URL":"https:\/\/doi.org\/10.1093\/pcp\/pcaa152","relation":{},"ISSN":["1471-9053"],"issn-type":[{"value":"1471-9053","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2021,1,1]]},"published":{"date-parts":[[2020,11,27]]}}}