{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,13]],"date-time":"2026-09-13T03:08:37Z","timestamp":1789268917526,"version":"build-2803163510"},"reference-count":44,"publisher":"Oxford University Press (OUP)","issue":"5","license":[{"start":{"date-parts":[[2024,5,30]],"date-time":"2024-05-30T00:00:00Z","timestamp":1717027200000},"content-version":"vor","delay-in-days":101,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100001691","name":"Japan Society for the Promotion of Science","doi-asserted-by":"publisher","award":["23KK0107"],"award-info":[{"award-number":["23KK0107"]}],"id":[{"id":"10.13039\/501100001691","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001695","name":"Japan Science and Technology Corporation","doi-asserted-by":"publisher","award":["JPMJPF2104"],"award-info":[{"award-number":["JPMJPF2104"]}],"id":[{"id":"10.13039\/501100001695","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001691","name":"Japan Society for the Promotion of Science","doi-asserted-by":"publisher","award":["23KK0107"],"award-info":[{"award-number":["23KK0107"]}],"id":[{"id":"10.13039\/501100001691","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001695","name":"Japan Science and Technology Corporation","doi-asserted-by":"publisher","award":["JPMJPF2104"],"award-info":[{"award-number":["JPMJPF2104"]}],"id":[{"id":"10.13039\/501100001695","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2024,5,30]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Bacillus pumilus TUAT1 acts as plant growth\u2013promoting rhizobacteria for various plants like rice and Arabidopsis. Under stress conditions, B. pumilus TUAT1 forms spores with a thick peptidoglycan (PGN) cell wall. Previous research showed that spores were significantly more effective than vegetative cells in enhancing plant growth. In Arabidopsis, lysin motif proteins, LYM1, LYM3 and CERK1, are required for recognizing bacterial PGNs to mediate immunity. Here, we examined the involvement of PGN receptor proteins in the plant growth promotion (PGP) effects of B. pumilus TUAT1 using Arabidopsis mutants defective in PGN receptors. Root growth of wild-type (WT), cerk1-1, lym1-1 and lym1-2 mutant plants was significantly increased by TUAT1 inoculation, but this was not the case for lym3-1 and lym3-2 mutant plants. RNA-seq analysis revealed that the expression of a number of defense-related genes was upregulated in lym3 mutant plants. These results suggested that B. pumilus TUAT1 may act to reduce the defense response, which is dependent on a functional LYM3. The expression of the defense-responsive gene, WRKY29, was significantly induced by the elicitor flg-22, in both WT and lym3 mutant plants, while this induction was significantly reduced by treatment with B. pumilus TUAT1 and PGNs in WT, but not in lym3 mutant plants. These findings suggest that the PGNs of B. pumilus TUAT1 may be recognized by the LYM3 receptor protein, suppressing the defense response, which results in plant growth promotion in a trade-off between defense and growth.<\/jats:p>","DOI":"10.1093\/pcp\/pcae016","type":"journal-article","created":{"date-parts":[[2024,2,19]],"date-time":"2024-02-19T14:30:51Z","timestamp":1708353051000},"page":"748-761","source":"Crossref","is-referenced-by-count":5,"title":["Involvement of Peptidoglycan Receptor Proteins in Mediating the Growth-Promoting Effects of <i>Bacillus pumilus<\/i> TUAT1 in <i>Arabidopsis thaliana<\/i>"],"prefix":"10.1093","volume":"65","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-4719-1938","authenticated-orcid":false,"given":"Md. Monirul","family":"Islam","sequence":"first","affiliation":[{"name":"Plant Biotechnology and Genetic Engineering Division, Institute of Food and Radiation Biology, Bangladesh Atomic Energy Commission , Dhaka 1207, Bangladesh"},{"name":"United Graduate School of Agriculture, Tokyo University of Agriculture and Technology , 3-5-8 Saiwaicho, Fuchu-shi, Tokyo, 183-8509 Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shin-ichiro","family":"Agake","sequence":"additional","affiliation":[{"name":"Institute of Global Innovation Research, Tokyo University of Agriculture and Technology , 3-8-1 Harumicho, Fuchu-shi, Tokyo, 183-8538 Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7136-4026","authenticated-orcid":false,"given":"Takehiro","family":"Ito","sequence":"additional","affiliation":[{"name":"United Graduate School of Agriculture, Tokyo University of Agriculture and Technology , 3-5-8 Saiwaicho, Fuchu-shi, Tokyo, 183-8509 Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Safiullah","family":"Habibi","sequence":"additional","affiliation":[{"name":"Institute of Agriculture, Tokyo University of Agriculture and Technology , 3-5-8 Saiwaicho, Fuchu-shi, Tokyo, 183-8509 Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Michiko","family":"Yasuda","sequence":"additional","affiliation":[{"name":"Institute of Global Innovation Research, Tokyo University of Agriculture and Technology , 3-8-1 Harumicho, Fuchu-shi, Tokyo, 183-8538 Japan"},{"name":"Institute of Agriculture, Tokyo University of Agriculture and Technology , 3-5-8 Saiwaicho, Fuchu-shi, Tokyo, 183-8509 Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tetsuya","family":"Yamada","sequence":"additional","affiliation":[{"name":"Institute of Global Innovation Research, Tokyo University of Agriculture and Technology , 3-8-1 Harumicho, Fuchu-shi, Tokyo, 183-8538 Japan"},{"name":"Institute of Agriculture, Tokyo University of Agriculture and Technology , 3-5-8 Saiwaicho, Fuchu-shi, Tokyo, 183-8509 Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5914-2247","authenticated-orcid":false,"given":"Gary","family":"Stacey","sequence":"additional","affiliation":[{"name":"Institute of Global Innovation Research, Tokyo University of Agriculture and Technology , 3-8-1 Harumicho, Fuchu-shi, Tokyo, 183-8538 Japan"},{"name":"Division of Plant Science and Technology, University of Missouri-Columbia\u2014Bond Life Science Center , 1201 Rollins St., Columbia, MO 65201-4231, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6540-0097","authenticated-orcid":false,"given":"Naoko","family":"Ohkama-Ohtsu","sequence":"additional","affiliation":[{"name":"Institute of Global Innovation Research, Tokyo University of Agriculture and Technology , 3-8-1 Harumicho, Fuchu-shi, Tokyo, 183-8538 Japan"},{"name":"Institute of Agriculture, Tokyo University of Agriculture and Technology , 3-5-8 Saiwaicho, Fuchu-shi, Tokyo, 183-8509 Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2024,2,19]]},"reference":[{"key":"2024053019294588100_R2","doi-asserted-by":"crossref","DOI":"10.3390\/agronomy12102325","article-title":"Biofertilizer with Bacillus pumilus TUAT1 spores improves growth, productivity, and lodging resistance in forage rice","volume":"12","author":"Agake","year":"2022","journal-title":"Agronomy"},{"key":"2024053019294588100_R3","doi-asserted-by":"crossref","DOI":"10.1264\/jsme2.ME21060","article-title":"Plant growth-promoting effects of viable and dead spores of Bacillus pumilus TUAT1 on Setaria viridis","volume":"37","author":"Agake","year":"2022","journal-title":"Microbes. 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Plant Sci."},{"key":"2024053019294588100_R7","doi-asserted-by":"crossref","first-page":"2190","DOI":"10.1111\/nph.15551","article-title":"Lipo-chitooligosaccharides promote lateral root formation and modify auxin homeostasis in Brachypodium distachyon","volume":"221","author":"Buendia","year":"2019","journal-title":"New Phytol."},{"key":"2024053019294588100_R8","doi-asserted-by":"crossref","first-page":"585","DOI":"10.1007\/s10265-014-0647-x","article-title":"Stable cesium uptake and accumulation capacities of five plant species as influenced by bacterial inoculation and cesium distribution in the soil","volume":"127","author":"Djedidi","year":"2014","journal-title":"J. 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China Life Sci."},{"key":"2024053019294588100_R32","doi-asserted-by":"crossref","first-page":"585","DOI":"10.1038\/nature02039","article-title":"Plant recognition of symbiotic bacteria requires two LysM receptor-like kinases","volume":"425","author":"Radutoiu","year":"2003","journal-title":"Nature"},{"key":"2024053019294588100_R33","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/1471-2229-9-101","article-title":"An archived activation tagged population of Arabidopsis thaliana to facilitate forward genetics approaches","volume":"9","author":"Robinson","year":"2009","journal-title":"BMC Plant Biol."},{"key":"2024053019294588100_R34","doi-asserted-by":"crossref","first-page":"122","DOI":"10.1080\/00380768.2018.1551042","article-title":"Evaluation of the effects of spores and their heat-treated residues from different Bacillus strains on the initial growth of rice plants","volume":"65","author":"Seerat","year":"2019","journal-title":"Soil Sci. 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