{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,5]],"date-time":"2026-09-05T04:12:24Z","timestamp":1788581544520,"version":"build-2803163510"},"reference-count":105,"publisher":"Oxford University Press (OUP)","issue":"6","license":[{"start":{"date-parts":[[2026,4,22]],"date-time":"2026-04-22T00:00:00Z","timestamp":1776816000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/pages\/standard-publication-reuse-rights"}],"funder":[{"DOI":"10.13039\/501100001700","name":"Ministry of Education, Culture, Sports, and Technology of Japan","doi-asserted-by":"crossref","award":["22K15150"],"award-info":[{"award-number":["22K15150"]}],"id":[{"id":"10.13039\/501100001700","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100001700","name":"Ministry of Education, Culture, Sports, and Technology of Japan","doi-asserted-by":"crossref","award":["20H04893"],"award-info":[{"award-number":["20H04893"]}],"id":[{"id":"10.13039\/501100001700","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100001700","name":"Ministry of Education, Culture, Sports, and Technology of Japan","doi-asserted-by":"crossref","award":["22H05075"],"award-info":[{"award-number":["22H05075"]}],"id":[{"id":"10.13039\/501100001700","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100001700","name":"Ministry of Education, Culture, Sports, and Technology of Japan","doi-asserted-by":"crossref","award":["20H05905"],"award-info":[{"award-number":["20H05905"]}],"id":[{"id":"10.13039\/501100001700","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100001700","name":"Ministry of Education, Culture, Sports, and Technology of Japan","doi-asserted-by":"crossref","award":["20H05911"],"award-info":[{"award-number":["20H05911"]}],"id":[{"id":"10.13039\/501100001700","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100001700","name":"Ministry of Education, Culture, Sports, and Technology of Japan","doi-asserted-by":"crossref","award":["23KF0089"],"award-info":[{"award-number":["23KF0089"]}],"id":[{"id":"10.13039\/501100001700","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100001700","name":"Ministry of Education, Culture, Sports, and Technology of Japan","doi-asserted-by":"crossref","award":["24K02051"],"award-info":[{"award-number":["24K02051"]}],"id":[{"id":"10.13039\/501100001700","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100002241","name":"Japan Science and Technology Agency","doi-asserted-by":"publisher","award":["JPMJPR20D2"],"award-info":[{"award-number":["JPMJPR20D2"]}],"id":[{"id":"10.13039\/501100002241","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100002241","name":"Japan Science and Technology Agency","doi-asserted-by":"publisher","award":["JPMJGXx23B"],"award-info":[{"award-number":["JPMJGXx23B"]}],"id":[{"id":"10.13039\/501100002241","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100002241","name":"Japan Science and Technology Agency","doi-asserted-by":"publisher","award":["JPMJAP2306"],"award-info":[{"award-number":["JPMJAP2306"]}],"id":[{"id":"10.13039\/501100002241","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001700","name":"MEXT","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100001700","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001691","name":"JSPS","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100001691","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100000780","name":"European Union","doi-asserted-by":"publisher","award":["101053972"],"award-info":[{"award-number":["101053972"]}],"id":[{"id":"10.13039\/501100000780","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2026,6,2]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>Mechanical injury is a primary trigger for cellular reprogramming during organ regeneration, yet the molecular mechanisms that link wounding to reprogramming remain poorly understood. In this study we identify the Arabidopsis HEAT SHOCK FACTOR A1 (HSFA1) class of transcription factors, which are key regulators of the heat stress response, as central players in wound-induced callus formation and shoot regeneration. Loss of HSFA1 function in the hsfa1abd triple or hsfa1abde quadruple mutants severely impairs cellular reprogramming, reducing callus formation from wounded hypocotyls, as well as shoot regeneration from explants. Conversely, overexpression of the HSFA1d gain-of-function variant markedly enhances regeneration. Time-series RNA-seq and ChIP-seq analyses revealed that HSFA1 directly activates the key reprogramming regulators WOUND-INDUCED DEDIFFERENTIATION 1 (WIND1), PLETHORA 3 (PLT3) and ZINC FINGER OF ARABIDOPSIS THALIANA 6 (ZAT6). Furthermore, we demonstrate that HSFA1d activity is attenuated by SAP AND MIZ1 DOMAIN-CONTAINING LIGASE1 (SIZ1)-mediated SMALL UBIQUITIN-LIKE MODIFIER (SUMO)ylation, linking post-translational modification to the regulation of wound responses. Our findings establish HSFA1 as an early transcriptional hub that integrates wound signals with the activation of a broad gene network that drives cellular reprogramming, thereby providing a mechanistic framework for understanding how stress-responsive transcription factors control regeneration.<\/jats:p>","DOI":"10.1093\/plcell\/koag124","type":"journal-article","created":{"date-parts":[[2026,4,21]],"date-time":"2026-04-21T11:27:47Z","timestamp":1776770867000},"source":"Crossref","is-referenced-by-count":3,"title":["Wounding activates the HSFA1 transcription factors to promote cellular reprogramming in Arabidopsis"],"prefix":"10.1093","volume":"38","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-1295-1244","authenticated-orcid":false,"given":"Duncan","family":"Coleman","sequence":"first","affiliation":[{"name":"RIKEN Center for Sustainable Resource Science , 1-7-22 Suehiro-cho, Tsurumi Ward, Yokohama, Kanagawa 230-0045 ,","place":["Japan"]},{"name":"Department of Biological Sciences, Faculty of Science, The University of Tokyo , 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033 ,","place":["Japan"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3294-7939","authenticated-orcid":false,"given":"Akira","family":"Iwase","sequence":"additional","affiliation":[{"name":"RIKEN Center for Sustainable Resource Science , 1-7-22 Suehiro-cho, Tsurumi Ward, Yokohama, Kanagawa 230-0045 ,","place":["Japan"]},{"name":"JST, PRESTO , 7 Goban-cho, Chiyoda-ku, Tokyo 102-0076","place":["Japan"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9218-7850","authenticated-orcid":false,"given":"Ayako","family":"Kawamura","sequence":"additional","affiliation":[{"name":"RIKEN Center for Sustainable Resource Science , 1-7-22 Suehiro-cho, Tsurumi Ward, Yokohama, Kanagawa 230-0045 ,","place":["Japan"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0000-8752-2597","authenticated-orcid":false,"given":"Arika","family":"Takebayashi","sequence":"additional","affiliation":[{"name":"RIKEN Center for Sustainable Resource Science , 1-7-22 Suehiro-cho, Tsurumi Ward, Yokohama, Kanagawa 230-0045 ,","place":["Japan"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0003-4936-5481","authenticated-orcid":false,"given":"Yu","family":"Chen","sequence":"additional","affiliation":[{"name":"RIKEN Center for Sustainable Resource Science , 1-7-22 Suehiro-cho, Tsurumi Ward, Yokohama, Kanagawa 230-0045 ,","place":["Japan"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3089-2284","authenticated-orcid":false,"given":"Max","family":"Minne","sequence":"additional","affiliation":[{"name":"RIKEN Center for Sustainable Resource Science , 1-7-22 Suehiro-cho, Tsurumi Ward, Yokohama, Kanagawa 230-0045 ,","place":["Japan"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4153-7328","authenticated-orcid":false,"given":"Katja E","family":"Jager","sequence":"additional","affiliation":[{"name":"Leibniz-Institut f\u00fcr Gem\u00fcse- und Zierpflanzenbau , Theodor-Echtermeyer-Weg 1, Gro\u00dfbeeren 14979 ,","place":["Germany"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2008-6641","authenticated-orcid":false,"given":"Maolin","family":"Peng","sequence":"additional","affiliation":[{"name":"Leibniz-Institut f\u00fcr Gem\u00fcse- und Zierpflanzenbau , Theodor-Echtermeyer-Weg 1, Gro\u00dfbeeren 14979 ,","place":["Germany"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4720-7311","authenticated-orcid":false,"given":"Yutaka","family":"Kodama","sequence":"additional","affiliation":[{"name":"Center for Bioscience Research and Education, Utsunomiya University , 350 Mine-machi, Utsunomiya, Tochigi 331-8505 ,","place":["Japan"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6879-0323","authenticated-orcid":false,"given":"David S","family":"Favero","sequence":"additional","affiliation":[{"name":"RIKEN Center for Sustainable Resource Science , 1-7-22 Suehiro-cho, Tsurumi Ward, Yokohama, Kanagawa 230-0045 ,","place":["Japan"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0002-6145-0323","authenticated-orcid":false,"given":"Tatsuya","family":"Takahashi","sequence":"additional","affiliation":[{"name":"RIKEN Center for Sustainable Resource Science , 1-7-22 Suehiro-cho, Tsurumi Ward, Yokohama, Kanagawa 230-0045 ,","place":["Japan"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9474-5131","authenticated-orcid":false,"given":"Momoko","family":"Ikeuchi","sequence":"additional","affiliation":[{"name":"RIKEN Center for Sustainable Resource Science , 1-7-22 Suehiro-cho, Tsurumi Ward, Yokohama, Kanagawa 230-0045 ,","place":["Japan"]},{"name":"Division of Biological Sciences, Graduate School of Science and Technology, Nara Institute of Science and Technology , 8916-5, Takayama-cho, Ikoma, Nara 630-0192 ,","place":["Japan"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1977-0510","authenticated-orcid":false,"given":"Takamasa","family":"Suzuki","sequence":"additional","affiliation":[{"name":"Department of Biological Chemistry, College of Bioscience and Biotechnology, Chubu University , 1200 Matsumoto-cho, Kasugai, Aichi 487-8501 ,","place":["Japan"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6762-5975","authenticated-orcid":false,"given":"Naohiko","family":"Ohama","sequence":"additional","affiliation":[{"name":"Graduate School of Agricultural and Life Sciences, The University of Tokyo , Bunkyo-ku, Tokyo 113-8657 ,","place":["Japan"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kazuko","family":"Yamaguchi-Shinozaki","sequence":"additional","affiliation":[{"name":"Graduate School of Agricultural and Life Sciences, The University of Tokyo , Bunkyo-ku, Tokyo 113-8657 ,","place":["Japan"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4822-361X","authenticated-orcid":false,"given":"Philip A","family":"Wigge","sequence":"additional","affiliation":[{"name":"Leibniz-Institut f\u00fcr Gem\u00fcse- und Zierpflanzenbau , Theodor-Echtermeyer-Weg 1, Gro\u00dfbeeren 14979 ,","place":["Germany"]},{"name":"Institute of Biochemistry and Biology, University of Potsdam , Karl-Liebknecht-Str. 24-25 Haus 25, Raum B1.11-12, Potsdam 14476 ,","place":["Germany"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1150-4426","authenticated-orcid":false,"given":"Lieven","family":"De Veylder","sequence":"additional","affiliation":[{"name":"Department of Plant Biotechnology and Bioinformatics, Ghent University , Gent ,","place":["Belgium"]},{"name":"Center for Plant Systems Biology, VIB , Gent ,","place":["Belgium"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9209-8230","authenticated-orcid":false,"given":"Keiko","family":"Sugimoto","sequence":"additional","affiliation":[{"name":"RIKEN Center for Sustainable Resource Science , 1-7-22 Suehiro-cho, Tsurumi Ward, Yokohama, Kanagawa 230-0045 ,","place":["Japan"]},{"name":"Department of Biological Sciences, Faculty of Science, The University of Tokyo , 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033 ,","place":["Japan"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2026,4,22]]},"reference":[{"key":"2026062405514010700_koag124-B1","doi-asserted-by":"publisher","first-page":"545","DOI":"10.1038\/nrm2938","article-title":"Heat shock factors: integrators of cell stress, development and lifespan","volume":"11","author":"Akerfelt","year":"2010","journal-title":"Nat Rev Mol Cell Biol"},{"key":"2026062405514010700_koag124-B2","doi-asserted-by":"publisher","first-page":"2847","DOI":"10.1093\/jxb\/ery142","article-title":"Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b regulates multiple developmental genes under benign and stress conditions","volume":"69","author":"Albihlal","year":"2018","journal-title":"J Exp Bot"},{"key":"2026062405514010700_koag124-B3","doi-asserted-by":"publisher","first-page":"1558","DOI":"10.1093\/jxb\/eraa576","article-title":"Diversity of plant heat shock factors: regulation, interactions, and functions","volume":"72","author":"Andrasi","year":"2021","journal-title":"J Exp Bot"},{"key":"2026062405514010700_koag124-B4","doi-asserted-by":"publisher","first-page":"143","DOI":"10.1016\/j.pbi.2018.06.006","article-title":"SUMOylation: re-wiring the plant nucleus during stress and development","volume":"45","author":"Augustine","year":"2018","journal-title":"Curr Opin Plant Biol"},{"key":"2026062405514010700_koag124-B5","doi-asserted-by":"publisher","first-page":"3467","DOI":"10.1093\/jxb\/ert185","article-title":"Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection","volume":"64","author":"Bechtold","year":"2013","journal-title":"J Exp Bot"},{"key":"2026062405514010700_koag124-B6","doi-asserted-by":"publisher","first-page":"160","DOI":"10.1186\/1471-2229-13-160","article-title":"Production of reactive oxygen species and wound-induced resistance in Arabidopsis thaliana against Botrytis cinerea are preceded and depend on a burst of calcium","volume":"13","author":"Beneloujaephajri","year":"2013","journal-title":"BMC Plant Biol"},{"key":"2026062405514010700_koag124-B7","doi-asserted-by":"publisher","first-page":"1513","DOI":"10.1093\/plcell\/koad028","article-title":"PAT1-type GRAS-domain proteins control regeneration by activating DOF3.4 to drive cell proliferation in Arabidopsis roots","volume":"35","author":"Bisht","year":"2023","journal-title":"Plant Cell"},{"key":"2026062405514010700_koag124-B8","doi-asserted-by":"publisher","first-page":"1739","DOI":"10.1091\/mbc.11.5.1739","article-title":"Complex regulation of the yeast heat shock transcription factor","volume":"11","author":"Bonner","year":"2000","journal-title":"Mol Biol Cell"},{"key":"2026062405514010700_koag124-B9","doi-asserted-by":"publisher","first-page":"1543","DOI":"10.1016\/j.molp.2022.08.008","article-title":"The regeneration factors ERF114 and ERF115 regulate auxin-mediated lateral root development in response to mechanical cues","volume":"15","author":"Canher","year":"2022","journal-title":"Mol Plant"},{"key":"2026062405514010700_koag124-B10","doi-asserted-by":"publisher","first-page":"974","DOI":"10.3389\/fpls.2017.00974","article-title":"SUMO-dependent synergism involving heat shock transcription factors with functions linked to seed longevity and desiccation tolerance","volume":"8","author":"Carranco","year":"2017","journal-title":"Front Plant Sci"},{"key":"2026062405514010700_koag124-B11","doi-asserted-by":"publisher","first-page":"3269","DOI":"10.1007\/s00018-012-1094-2","article-title":"SUMO, a heavyweight player in plant abiotic stress responses","volume":"69","author":"Castro","year":"2012","journal-title":"Cell Mol Life Sci"},{"key":"2026062405514010700_koag124-B12","doi-asserted-by":"publisher","first-page":"2952","DOI":"10.1105\/tpc.106.049981","article-title":"The Arabidopsis E3 SUMO ligase SIZ1 regulates plant growth and drought responses","volume":"19","author":"Catala","year":"2007","journal-title":"Plant Cell"},{"key":"2026062405514010700_koag124-B13","doi-asserted-by":"publisher","first-page":"707","DOI":"10.1104\/pp.15.01882","article-title":"Zinc-finger transcription factor ZAT6 positively regulates cadmium tolerance through the glutathione-dependent pathway in Arabidopsis","volume":"171","author":"Chen","year":"2016","journal-title":"Plant Physiol"},{"key":"2026062405514010700_koag124-B14","doi-asserted-by":"publisher","first-page":"i884","DOI":"10.1093\/bioinformatics\/bty560","article-title":"Fastp: an ultra-fast all-in-one FASTQ preprocessor","volume":"34","author":"Chen","year":"2018","journal-title":"Bioinformatics"},{"key":"2026062405514010700_koag124-B15","doi-asserted-by":"publisher","first-page":"735","DOI":"10.1046\/j.1365-313x.1998.00343.x","article-title":"Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana","volume":"16","author":"Clough","year":"1998","journal-title":"Plant J"},{"key":"2026062405514010700_koag124-B16","doi-asserted-by":"publisher","first-page":"33","DOI":"10.1007\/s11103-010-9652-1","article-title":"Sumoylation of Arabidopsis heat shock factor A2 (HsfA2) modifies its activity during acquired thermotholerance","volume":"74","author":"Cohen-Peer","year":"2010","journal-title":"Plant Mol Biol"},{"key":"2026062405514010700_koag124-B17","doi-asserted-by":"publisher","first-page":"330","DOI":"10.1104\/pp.20.00626","article-title":"The SUMO E3 ligase SIZ1 negatively regulates shoot regeneration","volume":"184","author":"Coleman","year":"2020","journal-title":"Plant Physiol"},{"key":"2026062405514010700_koag124-B18","doi-asserted-by":"publisher","first-page":"1258","DOI":"10.1016\/j.molp.2017.08.014","article-title":"Transcriptional regulation of the ambient temperature response by H2A.Z nucleosomes and HSF1 transcription factors in Arabidopsis","volume":"10","author":"Cortijo","year":"2017","journal-title":"Mol Plant"},{"key":"2026062405514010700_koag124-B19","doi-asserted-by":"publisher","first-page":"1065","DOI":"10.1111\/j.1365-313X.2005.02586.x","article-title":"Exploration of jasmonate signalling via automated and standardized transient expression assays in tobacco cells","volume":"44","author":"De Sutter","year":"2005","journal-title":"Plant J"},{"key":"2026062405514010700_koag124-B20","doi-asserted-by":"publisher","first-page":"1158","DOI":"10.1111\/tpj.16785","article-title":"Continual improvement of CRISPR-induced multiplex mutagenesis in Arabidopsis","volume":"119","author":"Develtere","year":"2024","journal-title":"Plant J"},{"key":"2026062405514010700_koag124-B21","doi-asserted-by":"publisher","first-page":"8843","DOI":"10.3390\/ijms22168843","article-title":"Role of reactive oxygen Species and hormones in plant responses to temperature changes","volume":"22","author":"Devireddy","year":"2021","journal-title":"Int J Mol Sci"},{"key":"2026062405514010700_koag124-B22","doi-asserted-by":"publisher","first-page":"1657","DOI":"10.1016\/j.celrep.2018.01.054","article-title":"Chloroplast signaling gates thermotolerance in Arabidopsis","volume":"22","author":"Dickinson","year":"2018","journal-title":"Cell Rep"},{"key":"2026062405514010700_koag124-B23","doi-asserted-by":"publisher","first-page":"947","DOI":"10.1016\/j.devcel.2022.03.010","article-title":"Surviving and thriving: how plants perceive and respond to temperature stress","volume":"57","author":"Ding","year":"2022","journal-title":"Dev Cell"},{"key":"2026062405514010700_koag124-B24","doi-asserted-by":"publisher","first-page":"15","DOI":"10.1093\/bioinformatics\/bts635","article-title":"STAR: ultrafast universal RNA-seq aligner","volume":"29","author":"Dobin","year":"2013","journal-title":"Bioinformatics"},{"key":"2026062405514010700_koag124-B25","doi-asserted-by":"publisher","first-page":"63","DOI":"10.1016\/0168-9452(86)90011-7","article-title":"Rapid and efficient regeneration of plants from explants of Arabidopsis thaliana","volume":"47","author":"Feldmann","year":"1986","journal-title":"Plant Sci"},{"key":"2026062405514010700_koag124-B26","doi-asserted-by":"publisher","first-page":"3333","DOI":"10.1105\/tpc.112.095844","article-title":"Plasma membrane cyclic nucleotide gated calcium channels control land plant thermal sensing and acquired thermotolerance","volume":"24","author":"Finka","year":"2012","journal-title":"Plant Cell"},{"key":"2026062405514010700_koag124-B27","doi-asserted-by":"publisher","first-page":"3426","DOI":"10.1038\/s41467-021-23786-6","article-title":"Heteromeric HSFA2\/HSFA3 complexes drive transcriptional memory after heat stress in Arabidopsis","volume":"12","author":"Friedrich","year":"2021","journal-title":"Nat Commun"},{"key":"2026062405514010700_koag124-B28","doi-asserted-by":"publisher","first-page":"393","DOI":"10.1105\/tpc.12.3.393","article-title":"Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box\u2013mediated gene expression","volume":"12","author":"Fujimoto","year":"2000","journal-title":"Plant Cell"},{"key":"2026062405514010700_koag124-B29","doi-asserted-by":"publisher","first-page":"718","DOI":"10.1016\/j.febslet.2015.01.039","article-title":"Redox-dependent translocation of the heat shock transcription factor AtHSFA8 from the cytosol to the nucleus in Arabidopsis thaliana","volume":"589","author":"Giesguth","year":"2015","journal-title":"FEBS Lett"},{"key":"2026062405514010700_koag124-B30","doi-asserted-by":"publisher","first-page":"860","DOI":"10.1126\/science.1240667","article-title":"ERF115 controls root quiescent center cell division and stem cell replenishment","volume":"342","author":"Heyman","year":"2013","journal-title":"Science"},{"key":"2026062405514010700_koag124-B31","doi-asserted-by":"publisher","first-page":"16165","DOI":"10.1038\/nplants.2016.165","article-title":"The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence","volume":"2","author":"Heyman","year":"2016","journal-title":"Nat Plants"},{"key":"2026062405514010700_koag124-B32","doi-asserted-by":"publisher","first-page":"45","DOI":"10.1073\/pnas.0503698102","article-title":"PDSM, a motif for phosphorylation-dependent SUMO modification","volume":"103","author":"Hietakangas","year":"2006","journal-title":"Proc Natl Acad Sci U S A"},{"key":"2026062405514010700_koag124-B33","doi-asserted-by":"publisher","first-page":"377","DOI":"10.1146\/annurev-arplant-050718-100434","article-title":"Molecular mechanisms of plant regeneration","volume":"70","author":"Ikeuchi","year":"2019","journal-title":"Annu Rev Plant Biol"},{"key":"2026062405514010700_koag124-B34","doi-asserted-by":"publisher","first-page":"1158","DOI":"10.1104\/pp.17.01035","article-title":"Wounding triggers callus formation via dynamic hormonal and transcriptional changes","volume":"175","author":"Ikeuchi","year":"2017","journal-title":"Plant Physiol"},{"key":"2026062405514010700_koag124-B35","doi-asserted-by":"publisher","first-page":"72","DOI":"10.1016\/j.pbi.2020.06.007","article-title":"How do plants transduce wound signals to induce tissue repair and organ regeneration?","volume":"57","author":"Ikeuchi","year":"2020","journal-title":"Curr Opin Plant Biol"},{"key":"2026062405514010700_koag124-B36","doi-asserted-by":"publisher","first-page":"2284","DOI":"10.1105\/tpc.109.068072","article-title":"SUMO E3 ligase HIGH PLOIDY2 regulates endocycle onset and meristem maintenance in Arabidopsis","volume":"21","author":"Ishida","year":"2009","journal-title":"Plant Cell"},{"key":"2026062405514010700_koag124-B37","doi-asserted-by":"publisher","first-page":"508","DOI":"10.1016\/j.cub.2011.02.020","article-title":"The AP2\/ERF transcription factor WIND1 controls cell dedifferentiation in Arabidopsis","volume":"21","author":"Iwase","year":"2011","journal-title":"Curr Biol"},{"key":"2026062405514010700_koag124-B38","doi-asserted-by":"publisher","first-page":"389","DOI":"10.1007\/s10265-015-0714-y","article-title":"WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed","volume":"128","author":"Iwase","year":"2015","journal-title":"J Plant Res"},{"key":"2026062405514010700_koag124-B39","doi-asserted-by":"publisher","first-page":"54","DOI":"10.1105\/tpc.16.00623","article-title":"WIND1 promotes shoot regeneration through transcriptional activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis","volume":"29","author":"Iwase","year":"2017","journal-title":"Plant Cell"},{"key":"2026062405514010700_koag124-B40","doi-asserted-by":"publisher","first-page":"40","DOI":"10.1016\/j.ydbio.2018.07.006","article-title":"WIND1 induces dynamic metabolomic reprogramming during regeneration in Brassica napus","volume":"442","author":"Iwase","year":"2018","journal-title":"Dev Biol"},{"key":"2026062405514010700_koag124-B41","doi-asserted-by":"publisher","first-page":"734","DOI":"10.1111\/nph.17594","article-title":"WIND transcription factors orchestrate wound-induced callus formation, vascular reconnection and defense response in Arabidopsis","volume":"232","author":"Iwase","year":"2021","journal-title":"New Phytol"},{"key":"2026062405514010700_koag124-B42","doi-asserted-by":"publisher","first-page":"1017","DOI":"10.1016\/j.cub.2015.02.022","article-title":"PLETHORA genes control regeneration by a two-step mechanism","volume":"25","author":"Kareem","year":"2015","journal-title":"Curr Biol"},{"key":"2026062405514010700_koag124-B43","doi-asserted-by":"publisher","first-page":"e98726","DOI":"10.15252\/embj.201798726","article-title":"Epigenetic reprogramming by histone acetyltransferase HAG1\/AtGCN5 is required for pluripotency acquisition in Arabidopsis","volume":"37","author":"Kim","year":"2018","journal-title":"EMBO J"},{"key":"2026062405514010700_koag124-B44","doi-asserted-by":"publisher","first-page":"e0152484","DOI":"10.1371\/journal.pone.0152484","article-title":"Time gating of chloroplast autofluorescence allows clearer fluorescence imaging in planta","volume":"11","author":"Kodama","year":"2016","journal-title":"PLoS One"},{"key":"2026062405514010700_koag124-B45","doi-asserted-by":"publisher","first-page":"6862","DOI":"10.1074\/jbc.M209694200","article-title":"The small ubiquitin-like modifier (SUMO) protein modification system in Arabidopsis. Accumulation of SUMO1 and -2 conjugates is increased by stress","volume":"278","author":"Kurepa","year":"2003","journal-title":"J Biol Chem"},{"key":"2026062405514010700_koag124-B46","doi-asserted-by":"publisher","first-page":"618","DOI":"10.1093\/pcp\/pcac017","article-title":"Warm temperature promotes shoot regeneration in Arabidopsis thaliana","volume":"63","author":"Lambolez","year":"2022","journal-title":"Plant Cell Physiol"},{"key":"2026062405514010700_koag124-B47","doi-asserted-by":"publisher","first-page":"357","DOI":"10.1038\/nmeth.1923","article-title":"Fast gapped-read alignment with Bowtie 2","volume":"9","author":"Langmead","year":"2012","journal-title":"Nat Methods"},{"key":"2026062405514010700_koag124-B48","doi-asserted-by":"publisher","first-page":"2353","DOI":"10.1105\/tpc.19.00519","article-title":"Transcriptional profiling reveals a time-of-day-specific role of REVEILLE 4\/8 in regulating the first wave of heat shock-induced gene expression in Arabidopsis","volume":"31","author":"Li","year":"2019","journal-title":"Plant Cell"},{"key":"2026062405514010700_koag124-B49","doi-asserted-by":"publisher","first-page":"20","DOI":"10.1111\/jipb.13579","article-title":"Heat shock factor A1s are required for phytochrome-interacting factor 4-mediated thermomorphogenesis in Arabidopsis","volume":"66","author":"Li","year":"2024","journal-title":"J Integr Plant Biol"},{"key":"2026062405514010700_koag124-B50","doi-asserted-by":"publisher","first-page":"2078","DOI":"10.1093\/bioinformatics\/btp352","article-title":"The sequence alignment\/map format and SAMtools","volume":"25","author":"Li","year":"2009","journal-title":"Bioinformatics"},{"key":"2026062405514010700_koag124-B51","doi-asserted-by":"publisher","first-page":"276","DOI":"10.1104\/pp.113.221168","article-title":"Common and distinct functions of Arabidopsis class A1 and A2 heat shock factors in diverse abiotic stress responses and development","volume":"163","author":"Liu","year":"2013","journal-title":"Plant Physiol"},{"key":"2026062405514010700_koag124-B52","doi-asserted-by":"publisher","first-page":"738","DOI":"10.1111\/j.1365-3040.2011.02278.x","article-title":"The role of class A1 heat shock factors (HSFA1s) in response to heat and other stresses in Arabidopsis","volume":"34","author":"Liu","year":"2011","journal-title":"Plant Cell Environ"},{"key":"2026062405514010700_koag124-B53","doi-asserted-by":"publisher","first-page":"760","DOI":"10.1111\/j.1365-313X.2008.03544.x","article-title":"The calmodulin-binding protein kinase 3 is part of heat-shock signal transduction in Arabidopsis thaliana","volume":"55","author":"Liu","year":"2008","journal-title":"Plant J"},{"key":"2026062405514010700_koag124-B54","doi-asserted-by":"publisher","first-page":"1391","DOI":"10.1105\/tpc.10.8.1391","article-title":"Two transcription factors, DREB1 and DREB2, with an EREBP\/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis","volume":"10","author":"Liu","year":"1998","journal-title":"Plant Cell"},{"key":"2026062405514010700_koag124-B55","doi-asserted-by":"publisher","first-page":"92","DOI":"10.1016\/j.plaphy.2012.12.013","article-title":"Arabidopsis heat shock factor HsfA1a directly senses heat stress, pH changes, and hydrogen peroxide via the engagement of redox state","volume":"64","author":"Liu","year":"2013","journal-title":"Plant Physiol Biochem"},{"key":"2026062405514010700_koag124-B56","doi-asserted-by":"publisher","first-page":"11","DOI":"10.1007\/s00438-003-0954-8","article-title":"Two different heat shock transcription factors regulate immediate early expression of stress genes in Arabidopsis","volume":"271","author":"Lohmann","year":"2004","journal-title":"Mol Genet Genomics"},{"key":"2026062405514010700_koag124-B57","doi-asserted-by":"publisher","first-page":"100419","DOI":"10.1016\/j.xplc.2022.100419","article-title":"Brassinosteroids promote thermotolerance through releasing BIN2-mediated phosphorylation and suppression of HsfA1 transcription factors in Arabidopsis","volume":"3","author":"Luo","year":"2022","journal-title":"Plant Commun"},{"key":"2026062405514010700_koag124-B58","doi-asserted-by":"publisher","first-page":"1357","DOI":"10.1105\/tpc.16.00640","article-title":"Type-B ARABIDOPSIS RESPONSE REGULATORs specify the shoot stem cell niche by dual regulation of WUSCHEL","volume":"29","author":"Meng","year":"2017","journal-title":"Plant Cell"},{"key":"2026062405514010700_koag124-B59","doi-asserted-by":"publisher","first-page":"279","DOI":"10.1093\/aob\/mcl107","article-title":"Could heat shock transcription factors function as hydrogen peroxide sensors in plants?","volume":"98","author":"Miller","year":"2006","journal-title":"Ann Bot"},{"key":"2026062405514010700_koag124-B60","doi-asserted-by":"publisher","first-page":"ra45","DOI":"10.1126\/scisignal.2000448","article-title":"The plant NADPH oxidase RBOHD mediates rapid systemic signaling in response to diverse stimuli","volume":"2","author":"Miller","year":"2009","journal-title":"Sci Signal"},{"key":"2026062405514010700_koag124-B61","doi-asserted-by":"publisher","first-page":"16512","DOI":"10.1073\/pnas.1004181107","article-title":"Proteomic analyses identify a diverse array of nuclear processes affected by small ubiquitin-like modifier conjugation in Arabidopsis","volume":"107","author":"Miller","year":"2010","journal-title":"Proc Natl Acad Sci U S A"},{"key":"2026062405514010700_koag124-B62","doi-asserted-by":"publisher","first-page":"2993","DOI":"10.1105\/tpc.105.036004","article-title":"The NAC transcription factors NST1 and NST2 of Arabidopsis regulate secondary wall thickenings and are required for anther dehiscence","volume":"17","author":"Mitsuda","year":"2005","journal-title":"Plant Cell"},{"key":"2026062405514010700_koag124-B63","doi-asserted-by":"publisher","first-page":"7760","DOI":"10.1073\/pnas.0500778102","article-title":"The Arabidopsis SUMO E3 ligase SIZ1 controls phosphate deficiency responses","volume":"102","author":"Miura","year":"2005","journal-title":"Proc Natl Acad Sci U S A"},{"key":"2026062405514010700_koag124-B64","doi-asserted-by":"publisher","first-page":"422","DOI":"10.1038\/nature12478","article-title":"GLUTAMATE RECEPTOR-LIKE genes mediate leaf-to-leaf wound signalling","volume":"500","author":"Mousavi","year":"2013","journal-title":"Nature"},{"key":"2026062405514010700_koag124-B65","doi-asserted-by":"publisher","first-page":"3373","DOI":"10.1093\/jxb\/erm184","article-title":"High-level overexpression of the Arabidopsis HsfA2 gene confers not only increased themotolerance but also salt\/osmotic stress tolerance and enhanced callus growth","volume":"58","author":"Ogawa","year":"2007","journal-title":"J Exp Bot"},{"key":"2026062405514010700_koag124-B66","doi-asserted-by":"publisher","first-page":"181","DOI":"10.1105\/tpc.15.00435","article-title":"The transcriptional cascade in the heat stress response of Arabidopsis is strictly regulated at the level of transcription factor expression","volume":"28","author":"Ohama","year":"2016","journal-title":"Plant Cell"},{"key":"2026062405514010700_koag124-B67","doi-asserted-by":"publisher","first-page":"53","DOI":"10.1016\/j.tplants.2016.08.015","article-title":"Transcriptional regulatory network of plant heat stress response","volume":"22","author":"Ohama","year":"2017","journal-title":"Trends Plant Sci"},{"key":"2026062405514010700_koag124-B68","doi-asserted-by":"publisher","first-page":"1959","DOI":"10.1105\/TPC.010127","article-title":"Repression domains of class II ERF transcriptional repressors share an essential motif for active repression","volume":"13","author":"Ohta","year":"2001","journal-title":"Plant Cell"},{"key":"2026062405514010700_koag124-B69","doi-asserted-by":"publisher","first-page":"201","DOI":"10.5511\/plantbiotechnology.11.0124a","article-title":"Novel vector systems to accelerate functional analysis of transcription factors using chimeric repressor gene-silencing technology (CRES-T)","volume":"28","author":"Oshima","year":"2011","journal-title":"Plant Biotechnol"},{"key":"2026062405514010700_koag124-B70","doi-asserted-by":"publisher","first-page":"528","DOI":"10.1104\/pp.108.116897","article-title":"Functional identification of Arabidopsis stress regulatory genes using the controlled cDNA overexpression system","volume":"147","author":"Papdi","year":"2008","journal-title":"Plant Physiol"},{"key":"2026062405514010700_koag124-B71","doi-asserted-by":"publisher","first-page":"457","DOI":"10.1016\/j.molp.2025.01.007","article-title":"Activation and memory of the heat shock response is mediated by prion-like domains of sensory HSFs in Arabidopsis","volume":"18","author":"Peng","year":"2025","journal-title":"Mol Plant"},{"key":"2026062405514010700_koag124-B72","doi-asserted-by":"publisher","first-page":"818","DOI":"10.1016\/j.cub.2010.02.062","article-title":"SCHIZORIZA controls tissue system complexity in plants","volume":"20","author":"Pernas","year":"2010","journal-title":"Curr Biol"},{"key":"2026062405514010700_koag124-B73","doi-asserted-by":"publisher","first-page":"1660","DOI":"10.3389\/fpls.2019.01660","article-title":"Reactive oxygen species as a response to wounding: in vivo imaging in Arabidopsis thaliana","volume":"10","author":"Prasad","year":"2019","journal-title":"Front Plant Sci"},{"key":"2026062405514010700_koag124-B74","doi-asserted-by":"publisher","first-page":"dev185710","DOI":"10.1242\/dev.185710","article-title":"A coherent feed-forward loop drives vascular regeneration in damaged aerial organs of plants growing in a normal developmental context","volume":"147","author":"Radhakrishnan","year":"2020","journal-title":"Development"},{"key":"2026062405514010700_koag124-B75","doi-asserted-by":"publisher","first-page":"W160","DOI":"10.1093\/nar\/gkw257","article-title":"deepTools2: a next generation web server for deep-sequencing data analysis","volume":"44","author":"Ramirez","year":"2016","journal-title":"Nucleic Acids Res"},{"key":"2026062405514010700_koag124-B76","doi-asserted-by":"publisher","first-page":"139","DOI":"10.1093\/bioinformatics\/btp616","article-title":"Edger: a Bioconductor package for differential expression analysis of digital gene expression data","volume":"26","author":"Robinson","year":"2010","journal-title":"Bioinformatics"},{"key":"2026062405514010700_koag124-B77","doi-asserted-by":"publisher","first-page":"1187","DOI":"10.1242\/dev.142570","article-title":"Direct conversion of root primordium into shoot meristem relies on timing of stem cell niche development","volume":"144","author":"Rosspopoff","year":"2017","journal-title":"Development"},{"key":"2026062405514010700_koag124-B78","doi-asserted-by":"publisher","first-page":"2641","DOI":"10.1007\/s00018-020-03723-4","article-title":"SUMO mediated regulation of transcription factors as a mechanism for transducing environmental cues into cellular signaling in plants","volume":"78","author":"Roy","year":"2021","journal-title":"Cell Mol Life Sci"},{"key":"2026062405514010700_koag124-B79","doi-asserted-by":"publisher","first-page":"404","DOI":"10.1038\/s42003-019-0646-5","article-title":"Histone acetylation orchestrates wound-induced transcriptional activation and cellular reprogramming in Arabidopsis","volume":"2","author":"Rymen","year":"2019","journal-title":"Commun Biol"},{"key":"2026062405514010700_koag124-B80","doi-asserted-by":"publisher","first-page":"2829","DOI":"10.1105\/tpc.108.065318","article-title":"The heat shock response in moss plants is regulated by specific calcium-permeable channels in the plasma membrane","volume":"21","author":"Saidi","year":"2009","journal-title":"Plant Cell"},{"key":"2026062405514010700_koag124-B81","doi-asserted-by":"publisher","first-page":"1362","DOI":"10.1016\/j.molp.2021.05.028","article-title":"Reconstruction of lateral root formation through single-cell RNA sequencing reveals order of tissue initiation","volume":"14","author":"Serrano-Ron","year":"2021","journal-title":"Mol Plant"},{"key":"2026062405514010700_koag124-B82","doi-asserted-by":"publisher","first-page":"dev159707","DOI":"10.1242\/dev.159707","article-title":"GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis","volume":"145","author":"Shibata","year":"2018","journal-title":"Development"},{"key":"2026062405514010700_koag124-B83","doi-asserted-by":"publisher","first-page":"463","DOI":"10.1016\/j.devcel.2010.02.004","article-title":"Arabidopsis regeneration from multiple tissues occurs via a root development pathway","volume":"18","author":"Sugimoto","year":"2010","journal-title":"Dev Cell"},{"key":"2026062405514010700_koag124-B84","doi-asserted-by":"publisher","first-page":"125","DOI":"10.1186\/1471-2164-8-125","article-title":"Transcriptional profiling of Arabidopsis heat shock proteins and transcription factors reveals extensive overlap between heat and non-heat stress response pathways","volume":"8","author":"Swindell","year":"2007","journal-title":"BMC Genomics"},{"key":"2026062405514010700_koag124-B85","doi-asserted-by":"publisher","first-page":"431","DOI":"10.1515\/biol-2018-0052","article-title":"Overexpression of zinc finger transcription factor ZAT6 enhances salt tolerance","volume":"13","author":"Tang","year":"2018","journal-title":"Open Life Sci"},{"key":"2026062405514010700_koag124-B86","doi-asserted-by":"publisher","first-page":"452","DOI":"10.1016\/j.cub.2010.01.018","article-title":"SCHIZORIZA encodes a nuclear factor regulating asymmetry of stem cell divisions in the Arabidopsis root","volume":"20","author":"ten Hove","year":"2010","journal-title":"Curr Biol"},{"key":"2026062405514010700_koag124-B87","doi-asserted-by":"publisher","first-page":"178","DOI":"10.1093\/bib\/bbs017","article-title":"Integrative genomics viewer (IGV): high-performance genomics data visualization and exploration","volume":"14","author":"Thorvaldsdottir","year":"2013","journal-title":"Brief Bioinform"},{"key":"2026062405514010700_koag124-B88","doi-asserted-by":"publisher","first-page":"1109","DOI":"10.1111\/pbi.13268","article-title":"Heat shock transcription factor A1b regulates heat tolerance in wheat and Arabidopsis through OPR3 and jasmonate signalling pathway","volume":"18","author":"Tian","year":"2020","journal-title":"Plant Biotechnol J"},{"key":"2026062405514010700_koag124-B89","doi-asserted-by":"publisher","first-page":"46","DOI":"10.1093\/pcp\/pcw191","article-title":"pKAMA-ITACHI vectors for highly efficient CRISPR\/Cas9-mediated gene knockout in Arabidopsis thaliana","volume":"58","author":"Tsutsui","year":"2017","journal-title":"Plant Cell Physiol"},{"key":"2026062405514010700_koag124-B90","doi-asserted-by":"publisher","first-page":"5536","DOI":"10.1073\/pnas.85.15.5536","article-title":"Agrobacterium tumefaciens-mediated transformation of Arabidopsis thaliana root explants by using kanamycin selection","volume":"85","author":"Valvekens","year":"1988","journal-title":"Proc Natl Acad Sci U S A"},{"key":"2026062405514010700_koag124-B91","doi-asserted-by":"crossref","first-page":"227","DOI":"10.1007\/978-1-62703-414-2_18","volume-title":"Jasmonate signaling: methods and protocols","author":"Vanden Bossche","year":"2013"},{"key":"2026062405514010700_koag124-B92","volume-title":"Ggplot2: elegant graphics for data analysis","author":"Villanueva","year":"2019"},{"key":"2026062405514010700_koag124-B93","doi-asserted-by":"publisher","first-page":"3889","DOI":"10.1093\/plcell\/koad192","article-title":"Thermosensitive SUMOylation of TaHsfA1 defines a dynamic ON\/OFF molecular switch for the heat stress response in wheat","volume":"35","author":"Wang","year":"2023","journal-title":"Plant Cell"},{"key":"2026062405514010700_koag124-B94","doi-asserted-by":"publisher","first-page":"e57613","DOI":"10.7554\/eLife.57613","article-title":"Accurate and versatile 3D segmentation of plant tissues at cellular resolution","volume":"9","author":"Wolny","year":"2020","journal-title":"Elife"},{"key":"2026062405514010700_koag124-B95","doi-asserted-by":"publisher","first-page":"541","DOI":"10.1007\/s11103-014-0202-0","article-title":"Heat shock factor HSFB2a involved in gametophyte development of Arabidopsis thaliana and its expression is controlled by a heat-inducible long non-coding antisense RNA","volume":"85","author":"Wunderlich","year":"2014","journal-title":"Plant Mol Biol"},{"key":"2026062405514010700_koag124-B96","doi-asserted-by":"publisher","first-page":"3024","DOI":"10.1016\/j.cell.2024.04.040","article-title":"Peptide REF1 is a local wound signal promoting plant regeneration","volume":"187","author":"Yang","year":"2024","journal-title":"Cell"},{"key":"2026062405514010700_koag124-B97","doi-asserted-by":"publisher","first-page":"1548","DOI":"10.1104\/pp.106.088831","article-title":"SIZ1 small ubiquitin-like modifier E3 ligase facilitates basal thermotolerance in Arabidopsis independent of salicylic acid","volume":"142","author":"Yoo","year":"2006","journal-title":"Plant Physiol"},{"key":"2026062405514010700_koag124-B98","doi-asserted-by":"publisher","first-page":"321","DOI":"10.1007\/s00438-011-0647-7","article-title":"Arabidopsis HsfA1 transcription factors function as the main positive regulators in heat shock-responsive gene expression","volume":"286","author":"Yoshida","year":"2011","journal-title":"Mol Genet Genomics"},{"key":"2026062405514010700_koag124-B99","doi-asserted-by":"publisher","first-page":"284","DOI":"10.1089\/omi.2011.0118","article-title":"clusterProfiler: an R package for comparing biological themes among gene clusters","volume":"16","author":"Yu","year":"2012","journal-title":"OMICS"},{"key":"2026062405514010700_koag124-B100","doi-asserted-by":"publisher","first-page":"1453","DOI":"10.1038\/s41477-021-01015-8","article-title":"Pluripotency acquisition in the middle cell layer of callus is required for organ regeneration","volume":"7","author":"Zhai","year":"2021","journal-title":"Nat Plants"},{"key":"2026062405514010700_koag124-B101","doi-asserted-by":"publisher","first-page":"491","DOI":"10.1038\/s41477-019-0408-x","article-title":"Jasmonate-mediated wound signalling promotes plant regeneration","volume":"5","author":"Zhang","year":"2019","journal-title":"Nat Plants"},{"key":"2026062405514010700_koag124-B102","doi-asserted-by":"publisher","first-page":"58","DOI":"10.1093\/pcp\/pcx160","article-title":"SUMO e3 ligase SlSIZ1 facilitates heat tolerance in tomato","volume":"59","author":"Zhang","year":"2018","journal-title":"Plant Cell Physiol"},{"key":"2026062405514010700_koag124-B103","doi-asserted-by":"publisher","first-page":"1073","DOI":"10.1105\/tpc.16.00863","article-title":"A two-step model for de novo activation of WUSCHEL during plant shoot regeneration","volume":"29","author":"Zhang","year":"2017","journal-title":"Plant Cell"},{"key":"2026062405514010700_koag124-B104","doi-asserted-by":"publisher","first-page":"R137","DOI":"10.1186\/gb-2008-9-9-r137","article-title":"Model-based analysis of ChIP-Seq (MACS)","volume":"9","author":"Zhang","year":"2008","journal-title":"Genome Biol"},{"key":"2026062405514010700_koag124-B105","doi-asserted-by":"publisher","first-page":"265","DOI":"10.1046\/j.1365-313x.2000.00868.x","article-title":"Technical advance: an estrogen receptor-based transactivator XVE mediates highly inducible gene expression in transgenic plants","volume":"24","author":"Zuo","year":"2000","journal-title":"Plant J"}],"container-title":["The Plant Cell"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/plcell\/advance-article-pdf\/doi\/10.1093\/plcell\/koag124\/68140172\/koag124.pdf","content-type":"application\/pdf","content-version":"am","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/plcell\/article-pdf\/38\/6\/koag124\/68140172\/koag124.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/plcell\/article-pdf\/38\/6\/koag124\/68140172\/koag124.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,6,24]],"date-time":"2026-06-24T09:51:56Z","timestamp":1782294716000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/plcell\/article\/doi\/10.1093\/plcell\/koag124\/8661150"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,4,22]]},"references-count":105,"journal-issue":{"issue":"6","published-print":{"date-parts":[[2026,6,2]]}},"URL":"https:\/\/doi.org\/10.1093\/plcell\/koag124","relation":{"has-preprint":[{"id-type":"doi","id":"10.1101\/2025.09.29.679115","asserted-by":"object"}]},"ISSN":["1040-4651","1532-298X"],"issn-type":[{"value":"1040-4651","type":"print"},{"value":"1532-298X","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2026,6]]},"published":{"date-parts":[[2026,4,22]]},"article-number":"koag124"}}