{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,8]],"date-time":"2026-10-08T06:29:18Z","timestamp":1791440958667,"version":"4.3.3"},"reference-count":174,"publisher":"Oxford University Press (OUP)","issue":"4","license":[{"start":{"date-parts":[[2023,4,19]],"date-time":"2023-04-19T00:00:00Z","timestamp":1681862400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"funder":[{"DOI":"10.13039\/100009754","name":"Museum of Vertebrate Zoology","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100009754","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100005595","name":"University of California","doi-asserted-by":"publisher","award":["DEB-1258185"],"award-info":[{"award-number":["DEB-1258185"]}],"id":[{"id":"10.13039\/100005595","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100005595","name":"University of California","doi-asserted-by":"publisher","award":["DEB-1652988"],"award-info":[{"award-number":["DEB-1652988"]}],"id":[{"id":"10.13039\/100005595","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100005595","name":"University of California","doi-asserted-by":"publisher","award":["DEB-1457845"],"award-info":[{"award-number":["DEB-1457845"]}],"id":[{"id":"10.13039\/100005595","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100005595","name":"University of California","doi-asserted-by":"publisher","award":["DEB-0640967"],"award-info":[{"award-number":["DEB-0640967"]}],"id":[{"id":"10.13039\/100005595","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100005595","name":"University of California","doi-asserted-by":"publisher","award":["DEB-0328700"],"award-info":[{"award-number":["DEB-0328700"]}],"id":[{"id":"10.13039\/100005595","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100005595","name":"University of California","doi-asserted-by":"publisher","award":["DEB 0640737"],"award-info":[{"award-number":["DEB 0640737"]}],"id":[{"id":"10.13039\/100005595","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["S10RR029668"],"award-info":[{"award-number":["S10RR029668"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["S10RR027303"],"award-info":[{"award-number":["S10RR027303"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2023,8,7]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>The biota of Sulawesi is noted for its high degree of endemism and for its substantial levels of in situ biological diversification. While the island\u2019s long period of isolation and dynamic tectonic history have been implicated as drivers of the regional diversification, this has rarely been tested in the context of an explicit geological framework. Here, we provide a tectonically informed biogeographical framework that we use to explore the diversification history of Sulawesi flying lizards (the Draco lineatus Group), a radiation that is endemic to Sulawesi and its surrounding islands. We employ a framework for inferring cryptic speciation that involves phylogeographic and genetic clustering analyses as a means of identifying potential species followed by population demographic assessment of divergence-timing and rates of bi-directional migration as means of confirming lineage independence (and thus species status). Using this approach, phylogenetic and population genetic analyses of mitochondrial sequence data obtained for 613 samples, a 50-SNP data set for 370 samples, and a 1249-locus exon-capture data set for 106 samples indicate that the current taxonomy substantially understates the true number of Sulawesi Draco species, that both cryptic and arrested speciations have taken place, and that ancient hybridization confounds phylogenetic analyses that do not explicitly account for reticulation. The Draco lineatus Group appears to comprise 15 species\u20149 on Sulawesi proper and 6 on peripheral islands. The common ancestor of this group colonized Sulawesi ~11 Ma when proto-Sulawesi was likely composed of two ancestral islands, and began to radiate ~6 Ma as new islands formed and were colonized via overwater dispersal. The enlargement and amalgamation of many of these proto-islands into modern Sulawesi, especially during the past 3 Ma, set in motion dynamic species interactions as once-isolated lineages came into secondary contact, some of which resulted in lineage merger, and others surviving to the present. [Genomics; Indonesia; introgression; mitochondria; phylogenetics; phylogeography; population genetics; reptiles.]<\/jats:p>","DOI":"10.1093\/sysbio\/syad020","type":"journal-article","created":{"date-parts":[[2023,4,19]],"date-time":"2023-04-19T11:58:00Z","timestamp":1681905480000},"page":"885-911","source":"Crossref","is-referenced-by-count":39,"title":["Species Delimitation, Phylogenomics, and Biogeography of Sulawesi Flying Lizards: A Diversification History Complicated by Ancient Hybridization, Cryptic Species, and Arrested Speciation"],"prefix":"10.1093","volume":"72","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-9562-5585","authenticated-orcid":false,"given":"Jimmy A","family":"Mcguire","sequence":"first","affiliation":[{"name":"Museum of Vertebrate Zoology, University of California, Berkeley , CA 94720 ,","place":["USA"]},{"name":"Department of Integrative Biology, University of California, Berkeley , CA 94720 ,","place":["USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xiaoting","family":"Huang","sequence":"additional","affiliation":[{"name":"College of Marine Life Sciences, Ocean University of China , No. 5 Yushan Road, Qindao, Shandong, 266003 ,","place":["PR China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1661-0543","authenticated-orcid":false,"given":"Sean B","family":"Reilly","sequence":"additional","affiliation":[{"name":"Department of Ecology and Evolutionary Biology, University of California, Santa Cruz , CA 95060 ,","place":["USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Djoko T","family":"Iskandar","sequence":"additional","affiliation":[{"name":"School of Life Sciences and Technology, Institut Teknologi Bandung , Bandung ,","place":["Indonesia"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Cynthia Y","family":"Wang-Claypool","sequence":"additional","affiliation":[{"name":"Museum of Vertebrate Zoology, University of California, Berkeley , CA 94720 ,","place":["USA"]},{"name":"Department of Integrative Biology, University of California, Berkeley , CA 94720 ,","place":["USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sarah","family":"Werning","sequence":"additional","affiliation":[{"name":"Department of Anatomy, Des Moines University , 3200 Grand Avenue, Des Moines, IA 50312-4198 ,","place":["USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6404-4991","authenticated-orcid":false,"given":"Rebecca A","family":"Chong","sequence":"additional","affiliation":[{"name":"Department of Biology, University of Hawaii at Manoa , Honolulu, HI 96822 ,","place":["USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shobi Z S","family":"Lawalata","sequence":"additional","affiliation":[{"name":"Museum of Vertebrate Zoology, University of California, Berkeley , CA 94720 ,","place":["USA"]},{"name":"Department of Integrative Biology, University of California, Berkeley , CA 94720 ,","place":["USA"]},{"name":"United in Diversity Foundation, Jalan Hayam Wuruk , Jakarta ,","place":["Indonesia"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alexander L","family":"Stubbs","sequence":"additional","affiliation":[{"name":"Museum of Vertebrate Zoology, University of California, Berkeley , CA 94720 ,","place":["USA"]},{"name":"Department of Integrative Biology, University of California, Berkeley , CA 94720 ,","place":["USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jeffrey H","family":"Frederick","sequence":"additional","affiliation":[{"name":"Museum of Vertebrate Zoology, University of California, Berkeley , CA 94720 ,","place":["USA"]},{"name":"Department of Integrative Biology, University of California, Berkeley , CA 94720 ,","place":["USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rafe M","family":"Brown","sequence":"additional","affiliation":[{"name":"Biodiversity Institute and Department of Ecology and Evolutionary Biology, 1345 Jayhawk Blvd., University of Kansas , Lawrence, KS 66045 ,","place":["USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ben J","family":"Evans","sequence":"additional","affiliation":[{"name":"Biology Department, McMaster University, Hamilton , Ontario ,","place":["Canada"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Umilaela","family":"Arifin","sequence":"additional","affiliation":[{"name":"Museum of Vertebrate Zoology, University of California, Berkeley , CA 94720 ,","place":["USA"]},{"name":"School of Life Sciences and Technology, Institut Teknologi Bandung , Bandung ,","place":["Indonesia"]},{"name":"Center for Taxonomy and Morphology, Zoologisches Museum Hamburg, Leibniz Institute for the Analysis of Biodiversity Change , Martin-Luther-King-Platz 3, R230 20146 Hamburg ,","place":["Germany"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Awal","family":"Riyanto","sequence":"additional","affiliation":[{"name":"Laboratory of Herpetology, Museum Zoologicum Bogoriense, Research Center for Biosystematics and Evolution, National Research and Innovation Agency of Indonesia (BRIN) , Cibinong 16911 ,","place":["Indonesia"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Amir","family":"Hamidy","sequence":"additional","affiliation":[{"name":"Laboratory of Herpetology, Museum Zoologicum Bogoriense, Research Center for Biosystematics and Evolution, National Research and Innovation Agency of Indonesia (BRIN) , Cibinong 16911 ,","place":["Indonesia"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Evy","family":"Arida","sequence":"additional","affiliation":[{"name":"Research Center for Applied Zoology, National Research and Innovation Agency of Indonesia (BRIN) , Cibinong 16911 ,","place":["Indonesia"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Michelle S","family":"Koo","sequence":"additional","affiliation":[{"name":"Museum of Vertebrate Zoology, University of California, Berkeley , CA 94720 ,","place":["USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jatna","family":"Supriatna","sequence":"additional","affiliation":[{"name":"Department of Biology, Institute for Sustainable Earth and Resources (I-SER), Gedung Laboratorium Multidisiplin, and Research Center for Climate Change (RCCC-UI), Gedung Laboratorium Multidisiplin, Faculty of Mathematics and Natural Sciences, Universitas Indonesia , Depok 16424 ,","place":["Indonesia"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Noviar","family":"Andayani","sequence":"additional","affiliation":[{"name":"Department of Biology, Institute for Sustainable Earth and Resources (I-SER), Gedung Laboratorium Multidisiplin, and Research Center for Climate Change (RCCC-UI), Gedung Laboratorium Multidisiplin, Faculty of Mathematics and Natural Sciences, Universitas Indonesia , Depok 16424 ,","place":["Indonesia"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Robert","family":"Hall","sequence":"additional","affiliation":[{"name":"SE Asia Research Group (SEARG), Department of Earth Sciences, Royal Holloway University of London , Egham, Surrey TW20 0EX ,","place":["UK"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2023,4,19]]},"reference":[{"key":"2025071806065415200_CIT0001","doi-asserted-by":"crossref","first-page":"162","DOI":"10.1093\/sysbio\/sys078","article-title":"Pruning rogue taxa improves phylogenetic accuracy: an efficient algorithm and webservice","volume":"62","author":"Aberer","year":"2013","journal-title":"Syst. 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