{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,29]],"date-time":"2026-08-29T03:11:58Z","timestamp":1787973118700,"version":"build-2784847793"},"reference-count":90,"publisher":"Oxford University Press (OUP)","issue":"5","license":[{"start":{"date-parts":[[2024,7,23]],"date-time":"2024-07-23T00:00:00Z","timestamp":1721692800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/pages\/standard-publication-reuse-rights"}],"funder":[{"name":"National Science Foundation Doctoral Dissertation Improvement","award":["DEB-1601645"],"award-info":[{"award-number":["DEB-1601645"]}]},{"name":"Operation Wallacea, American Philosophical Society"},{"name":"International Society for Reef Studies Graduate Fellowship"},{"name":"PADI Foundation Grant"},{"name":"American Museum of Natural History Lerner Gray Funds"},{"name":"The Ohio State University Presidential Fellowship","award":["CONACyTCB-2012-01-177293"],"award-info":[{"award-number":["CONACyTCB-2012-01-177293"]}]},{"name":"The Ohio State University Presidential Fellowship","award":["CONABIO NE018"],"award-info":[{"award-number":["CONABIO NE018"]}]},{"name":"Trautman Fund of The OSU Museum of Biological Diversity"},{"name":"The Ohio State Universit"},{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["DEB-1257796"],"award-info":[{"award-number":["DEB-1257796"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2024,10,30]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>Recent genomic analyses have highlighted the prevalence of speciation with gene flow in many taxa and have underscored the importance of accounting for these reticulate evolutionary processes when constructing species trees and generating parameter estimates. This is especially important for deepening our understanding of speciation in the sea where fast-moving ocean currents, expanses of deep water, and periodic episodes of sea level rise and fall act as soft and temporary allopatric barriers that facilitate both divergence and secondary contact. Under these conditions, gene flow is not expected to cease completely while contemporary distributions are expected to differ from historical ones. Here, we conduct range-wide sampling for Pederson\u2019s cleaner shrimp (Ancylomenes pedersoni), a species complex from the Greater Caribbean that contains three clearly delimited mitochondrial lineages with both allopatric and sympatric distributions. Using mtDNA barcodes and a genomic ddRADseq approach, we combine classic phylogenetic analyses with extensive topology testing and demographic modeling (10 site frequency replicates \u00d7 45 evolutionary models \u00d7 50 model simulations\/replicate\u2005=\u200522,500 simulations) to test species boundaries and reconstruct the evolutionary history of what was expected to be a simple case study. Instead, our results indicate a history of allopatric divergence, secondary contact, introgression, and endemic hybrid speciation that we hypothesize was driven by the final closure of the Isthmus of Panama and the strengthening of the Gulf Stream Current ~3.5 Ma. The history of this species complex recovered by model-based methods that allow reticulation differs from that recovered by standard phylogenetic analyses and is unexpected given contemporary distributions. The geologically and biologically meaningful insights gained by our model selection analyses illuminate what is likely a novel pathway of species formation not previously documented that resulted from one of the most biogeographically significant events in Earth\u2019s history.<\/jats:p>","DOI":"10.1093\/sysbio\/syae045","type":"journal-article","created":{"date-parts":[[2024,7,23]],"date-time":"2024-07-23T05:43:54Z","timestamp":1721713434000},"page":"758-768","source":"Crossref","is-referenced-by-count":5,"title":["Topology Testing and Demographic Modeling Illuminate a Novel Speciation Pathway in the Greater Caribbean Sea Following the Formation of the Isthmus of Panama"],"prefix":"10.1093","volume":"73","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-0401-1570","authenticated-orcid":false,"given":"Benjamin M","family":"Titus","sequence":"first","affiliation":[{"name":"Department of Biological Sciences, University of Alabama , 1325 Science and Engineering Complex, Tuscaloosa, AL 35487 ,","place":["USA"]},{"name":"Dauphin Island Sea Lab , 101 Bienville Blvd, Dauphin Island, AL 36528 ,","place":["USA"]},{"name":"Department of Evolution, Ecology, and Organismal Biology, The Ohio State University , 1315 Kinnear Rd, Columbus, OH 43212 ,","place":["USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"H Lisle","family":"Gibbs","sequence":"additional","affiliation":[{"name":"Department of Evolution, Ecology, and Organismal Biology, The Ohio State University , 1315 Kinnear Rd, Columbus, OH 43212 ,","place":["USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Nuno","family":"Sim\u00f5es","sequence":"additional","affiliation":[{"name":"Facultad de Ciencias, Universidad Nacional Autonoma de Mexico-Sisal , Puerto de abrigo s\/n, Sisal, CP 97356 Yucat\u00e1n ,","place":["Mexico"]},{"name":"International Chair for Coastal and Marine Studies in Mexico, Harte Research Institute for Gulf of Mexico Studies, Texas A&M University , 6300 Ocean Dr, Corpus Christi, TX 78412 ,","place":["USA"]},{"name":"Laboratorio Nacional de Resilencia Costera (LANRESC, CONACYT) , 97356 Sisal, Yucata\u00b4n ,","place":["Mexico"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6182-0369","authenticated-orcid":false,"given":"Marymegan","family":"Daly","sequence":"additional","affiliation":[{"name":"Department of Evolution, Ecology, and Organismal Biology, The Ohio State University , 1315 Kinnear Rd, Columbus, OH 43212 ,","place":["USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2024,7,23]]},"reference":[{"issue":"9","key":"2025072220014151600_CIT0001","doi-asserted-by":"crossref","first-page":"1196","DOI":"10.1038\/s41559-020-1238-y","article-title":"Global biogeography of marine dispersal potential","volume":"4","author":"\u00c1lvarez-Noriega","year":"2020","journal-title":"Nat. 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