{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,19]],"date-time":"2026-09-19T03:01:53Z","timestamp":1789786913684,"version":"4.0.1"},"reference-count":38,"publisher":"Oxford University Press (OUP)","license":[{"start":{"date-parts":[[2026,7,17]],"date-time":"2026-07-17T00:00:00Z","timestamp":1784246400000},"content-version":"vor","delay-in-days":197,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2026,1,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>This study characterizes the genomic diversity and population structure of Mexican Gir cattle. We sampled 226 animals from three tropical herds and isolated DNA from hair samples was genotyped using the GGP Indicus 50K array. After quality control, 212 animals and 28,394 autosomal SNPs remained for a within-breed analysis. We merged the Mexican Gir dataset with an available online database involving 134 worldwide breeds. The combined dataset was used for across-breed comparisons, with 9091 shared SNPs. Within-breed diversity was high (Heterozygosity Observed\u2009=\u20090.40; Heterozygosity Expected\u2009=\u20090.38), and genomic inbreeding by Hardy-Weinberg Equilibrium (FIS=-0.04), by Genomic Relationship Matrix (FGRM=-0.02) and by Runs of Homozygosity (FROH=0.07) was low. Runs of Homozygosity were dominated by short segments (1\u20132\u2009Mb), which accounted for 75% of the total detected segments, consistent with historical rather than recent inbreeding. Multidimensional scaling grouped Mexican Gir with Asian zebu, particularly Gir from India and Pakistan; pairwise Fixation Index values were lowest versus Gir, Red Sindhi, Lohani, Rojhan, and Tharparkar, and IBS heatmaps showed greater similarity to Asian indicine than to unrelated zebu. ADMIXTURE-supported ancestry components were concordant with the breed\u2019s introduction history. Overall, Mexican Gir exhibit ample genetic variability and low recent inbreeding, providing a robust foundation to intensify selection for productivity and tropical adaptation while safeguarding diversity. These results support genomic monitoring (FIS, FGRM, FROH), balanced sire usage, and targeted germplasm introduction as management priorities.<\/jats:p>","DOI":"10.1093\/tas\/txag094","type":"journal-article","created":{"date-parts":[[2026,7,17]],"date-time":"2026-07-17T11:44:30Z","timestamp":1784288670000},"source":"Crossref","is-referenced-by-count":0,"title":["Genetic diversity and population structure of Mexican Gir cattle using genome-wide SNP data"],"prefix":"10.1093","volume":"10","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-7316-4589","authenticated-orcid":false,"given":"Ricardo","family":"Mart\u00ednez-Rocha","sequence":"first","affiliation":[{"name":"Posgrado en Producci\u00f3n Animal, Universidad Aut\u00f3noma Chapingo , Texcoco, State of Mexico 56230,","place":["Mexico"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5043-8914","authenticated-orcid":false,"given":"Jonathan Emanuel","family":"Valerio-Hern\u00e1ndez","sequence":"additional","affiliation":[{"name":"Universidad Nacional Aut\u00f3noma de M\u00e9xio Facultad de Medicina Veterinaria y Zootecnia, , Ciudad Universitaria , Mexico City, 04510,","place":["Mexico"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1447-4632","authenticated-orcid":false,"given":"Rafael","family":"N\u00fa\u00f1ez-Dom\u00ednguez","sequence":"additional","affiliation":[{"name":"Posgrado en Producci\u00f3n Animal, Universidad Aut\u00f3noma Chapingo , Texcoco, State of Mexico 56230,","place":["Mexico"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-3185-8494","authenticated-orcid":false,"given":"Rodolfo","family":"Ram\u00edrez-Valverde","sequence":"additional","affiliation":[{"name":"Posgrado en Producci\u00f3n Animal, Universidad Aut\u00f3noma Chapingo , Texcoco, State of Mexico 56230,","place":["Mexico"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4011-6142","authenticated-orcid":false,"given":"Joel","family":"Dom\u00ednguez-Viveros","sequence":"additional","affiliation":[{"name":"Facultad de Zootecnia y Ecolog\u00eda, Universidad Aut\u00f3noma de Chihuahua , Chihuahua, 31000,","place":["Mexico"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Juan Fernando","family":"Saiz","sequence":"additional","affiliation":[{"name":"Facultad de Zootecnia y Ecolog\u00eda, Universidad Aut\u00f3noma de Chihuahua , Chihuahua, 31000,","place":["Mexico"]},{"name":"Asociaci\u00f3n Mexicana de Criadores de Ceb\u00fa , Tampico, 89100,","place":["Mexico"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Julius","family":"Mugambe","sequence":"additional","affiliation":[{"name":"Department of Animal Biosciences, Interbull Centre , Uppsala, 75007,","place":["Sweden"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0783-381X","authenticated-orcid":false,"given":"Jorge","family":"Hidalgo","sequence":"additional","affiliation":[{"name":"Department of Animal and Dairy Science, University of Georgia , Athens, GA 30602,","place":["United States"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2026,7,17]]},"reference":[{"key":"2026091822215869400_txag094-B2","doi-asserted-by":"publisher","first-page":"1655","DOI":"10.1101\/gr.094052.109","article-title":"Fast model-based estimation of ancestry in unrelated individuals","volume":"19","author":"Alexander","year":"2009","journal-title":"Genome Res"},{"key":"2026091822215869400_txag094-B3","author":"AMCC","year":"2021"},{"key":"2026091822215869400_txag094-B4","doi-asserted-by":"publisher","first-page":"2285","DOI":"10.3390\/ani10122285","article-title":"Insights into genetic diversity, runs of homozygosity and heterozygosity-rich regions in maremmana semi-feral cattle using pedigree and genomic data","volume":"10","author":"Biscarini","year":"2020","journal-title":"Animals. 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