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They have developed diverse regulatory processes to face drought that differ depending on their ecological niche. The two sympatric oaks species (Quercus robur L. and Quercus petraea (Matt.) Liebl) have different levels of drought tolerance. We investigated their strategies for facing drought stress by analysing the transcriptome, small-RNAome and methylome dynamics of young plants grown under control and drought stress conditions. Data indicate that cell wall remodeling is most likely involved in the better tolerance Q. petraea than of Q. robur. Furthermore, major methylation differences were identified between both oak species that were in part associated to their difference in drought stress responses. Integration of the three datasets revealed genomic co-locations of potential importance for forest tree adaptation to drought stress. Our data are consistent with species-specific molecular responses of oak to drought stress related to their ecological niches.<\/jats:p>","DOI":"10.1093\/treephys\/tpag134","type":"journal-article","created":{"date-parts":[[2026,9,12]],"date-time":"2026-09-12T16:21:08Z","timestamp":1789230068000},"source":"Crossref","is-referenced-by-count":0,"title":["Sympatric European white oaks species display contrasting epigenetic response to soil water availability"],"prefix":"10.1093","volume":"46","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-8539-3522","authenticated-orcid":false,"given":"Bernadette","family":"Rubio","sequence":"first","affiliation":[{"name":"Ecophysiologie et G\u00e9nomique Fonctionnelle de la Vigne (EGFV), University of Bordeaux, Bordeaux Sciences Agro, INRAE, ISVV, Villenave d\u2019Ornon, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1561-266X","authenticated-orcid":false,"given":"Gr\u00e9goire","family":"Le Provost","sequence":"additional","affiliation":[{"name":"Univ. 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