{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,19]],"date-time":"2026-04-19T16:25:12Z","timestamp":1776615912253,"version":"3.51.2"},"reference-count":10,"publisher":"Oxford University Press (OUP)","issue":"8","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2009,4,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: INTEGRALL is a freely available, text-based search system developed with the aim of collecting and organizing information on integrons in a single database. The current release (1.2) contains more than 4800 integron sequences and provides a public genetic repository for sequence data and nomenclature, offering scientists an easy and interactive access to integron's DNA sequences, their molecular arrangements as well as their genetic contexts.<\/jats:p>\n               <jats:p>Availability: \u00a0http:\/\/integrall.bio.ua.pt<\/jats:p>\n               <jats:p>Contact: \u00a0amoura@ua.pt<\/jats:p>","DOI":"10.1093\/bioinformatics\/btp105","type":"journal-article","created":{"date-parts":[[2009,2,20]],"date-time":"2009-02-20T01:44:06Z","timestamp":1235094246000},"page":"1096-1098","source":"Crossref","is-referenced-by-count":570,"title":["INTEGRALL: a database and search engine for integrons, integrases and gene cassettes"],"prefix":"10.1093","volume":"25","author":[{"given":"Alexandra","family":"Moura","sequence":"first","affiliation":[{"name":"1 CESAM & Department of Biology, University of Aveiro, Campus Universit\u00e1rio de Santiago, 3810-193 Aveiro, 2Sindesi \u2013 Informatic Systems and Solutions Lda., Rua Manuel Barbuda e Vasconcelos, 62-2D, 3810-498 Aveiro and 3Department of Biology, University of Aveiro, Campus Universit\u00e1rio de Santiago, 3810-193 Aveiro, Portugal"}]},{"given":"M\u00e1rio","family":"Soares","sequence":"additional","affiliation":[{"name":"1 CESAM & Department of Biology, University of Aveiro, Campus Universit\u00e1rio de Santiago, 3810-193 Aveiro, 2Sindesi \u2013 Informatic Systems and Solutions Lda., Rua Manuel Barbuda e Vasconcelos, 62-2D, 3810-498 Aveiro and 3Department of Biology, University of Aveiro, Campus Universit\u00e1rio de Santiago, 3810-193 Aveiro, Portugal"}]},{"given":"Carolina","family":"Pereira","sequence":"additional","affiliation":[{"name":"1 CESAM & Department of Biology, University of Aveiro, Campus Universit\u00e1rio de Santiago, 3810-193 Aveiro, 2Sindesi \u2013 Informatic Systems and Solutions Lda., Rua Manuel Barbuda e Vasconcelos, 62-2D, 3810-498 Aveiro and 3Department of Biology, University of Aveiro, Campus Universit\u00e1rio de Santiago, 3810-193 Aveiro, Portugal"}]},{"given":"Nuno","family":"Leit\u00e3o","sequence":"additional","affiliation":[{"name":"1 CESAM & Department of Biology, University of Aveiro, Campus Universit\u00e1rio de Santiago, 3810-193 Aveiro, 2Sindesi \u2013 Informatic Systems and Solutions Lda., Rua Manuel Barbuda e Vasconcelos, 62-2D, 3810-498 Aveiro and 3Department of Biology, University of Aveiro, Campus Universit\u00e1rio de Santiago, 3810-193 Aveiro, Portugal"}]},{"given":"Isabel","family":"Henriques","sequence":"additional","affiliation":[{"name":"1 CESAM & Department of Biology, University of Aveiro, Campus Universit\u00e1rio de Santiago, 3810-193 Aveiro, 2Sindesi \u2013 Informatic Systems and Solutions Lda., Rua Manuel Barbuda e Vasconcelos, 62-2D, 3810-498 Aveiro and 3Department of Biology, University of Aveiro, Campus Universit\u00e1rio de Santiago, 3810-193 Aveiro, Portugal"}]},{"given":"Ant\u00f3nio","family":"Correia","sequence":"additional","affiliation":[{"name":"1 CESAM & Department of Biology, University of Aveiro, Campus Universit\u00e1rio de Santiago, 3810-193 Aveiro, 2Sindesi \u2013 Informatic Systems and Solutions Lda., Rua Manuel Barbuda e Vasconcelos, 62-2D, 3810-498 Aveiro and 3Department of Biology, University of Aveiro, Campus Universit\u00e1rio de Santiago, 3810-193 Aveiro, Portugal"}]}],"member":"286","published-online":{"date-parts":[[2009,2,19]]},"reference":[{"key":"2023051607021285200_B1","doi-asserted-by":"crossref","first-page":"3389","DOI":"10.1093\/nar\/25.17.3389","article-title":"Gapped BLAST and PSI-BLAST: a new generation of protein database search programs","volume":"25","author":"Altschul","year":"1997","journal-title":"Nucleic Acids Res"},{"key":"2023051607021285200_B2","doi-asserted-by":"crossref","first-page":"301","DOI":"10.1016\/j.tim.2007.05.004","article-title":"Integrons: mobilizable platforms that promote genetic diversity in bacteria","volume":"15","author":"Boucher","year":"2007","journal-title":"Trends Microbiol."},{"key":"2023051607021285200_B3","doi-asserted-by":"crossref","first-page":"5095","DOI":"10.1128\/JB.00152-08","article-title":"The evolution of class 1 integrons and the rise of antibiotic resistance","volume":"190","author":"Gillings","year":"2008","journal-title":"J. Bacteriol."},{"key":"2023051607021285200_B4","doi-asserted-by":"crossref","first-page":"68","DOI":"10.1111\/j.1749-6632.1999.tb08866.x","article-title":"Mobile gene cassettes and integrons in evolution","volume":"870","author":"Hall","year":"1999","journal-title":"Ann. N. Y. Acad. Sci."},{"key":"2023051607021285200_B5","doi-asserted-by":"crossref","first-page":"545","DOI":"10.1016\/S1286-4579(01)01410-1","article-title":"Pathogenicity islands: the tip of the iceberg","volume":"3","author":"Hentschel","year":"2001","journal-title":"Microbes Infect."},{"key":"2023051607021285200_B6","doi-asserted-by":"crossref","first-page":"D45","DOI":"10.1093\/nar\/gkh084","article-title":"ACLAME: a classification of mobile genetic elements","volume":"32","author":"Leplae","year":"2004","journal-title":"Nucleic Acids Res"},{"key":"2023051607021285200_B7","doi-asserted-by":"crossref","first-page":"608","DOI":"10.1038\/nrmicro1462","article-title":"Integrons: agents of bacterial evolution","volume":"4","author":"Mazel","year":"2006","journal-title":"Nat. Rev. Microbiol."},{"key":"2023051607021285200_B8","doi-asserted-by":"crossref","first-page":"D32","DOI":"10.1093\/nar\/gkj014","article-title":"ISfinder: the reference centre for bacterial insertion sequences","volume":"34","author":"Siguier","year":"2006","journal-title":"Nucleic Acids Res."},{"key":"2023051607021285200_B9","doi-asserted-by":"crossref","first-page":"700","DOI":"10.1038\/nrmicro1232","article-title":"Studying plasmid horizontal transfer in situ: a critical review","volume":"3","author":"S\u00f8rensen","year":"2005","journal-title":"Nat. Rev. Microbiol."},{"key":"2023051607021285200_B10","doi-asserted-by":"crossref","first-page":"e1000059","DOI":"10.1371\/journal.pcbi.1000059","article-title":"The emergence and fate of horizontally acquired genes in Escherichia coli","volume":"4","author":"van Passel","year":"2008","journal-title":"PLoS Comput. Biol."}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/25\/8\/1096\/50287462\/bioinformatics_25_8_1096.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/25\/8\/1096\/50287462\/bioinformatics_25_8_1096.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,5,16]],"date-time":"2023-05-16T07:05:03Z","timestamp":1684220703000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/25\/8\/1096\/324536"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2009,2,19]]},"references-count":10,"journal-issue":{"issue":"8","published-print":{"date-parts":[[2009,4,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btp105","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2009,4,15]]},"published":{"date-parts":[[2009,2,19]]}}}