{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,30]],"date-time":"2025-10-30T11:26:21Z","timestamp":1761823581653},"reference-count":18,"publisher":"Oxford University Press (OUP)","issue":"11","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":1249,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/3.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013,6,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: RegaDB is a free and open source data management and analysis environment for infectious diseases. RegaDB allows clinicians to store, manage and analyse patient data, including viral genetic sequences. Moreover, RegaDB provides researchers with a mechanism to collect data in a uniform format and offers them a canvas to make newly developed bioinformatics tools available to clinicians and virologists through a user friendly interface.<\/jats:p>\n               <jats:p>Availability and implementation: Source code, binaries and documentation are available on http:\/\/rega.kuleuven.be\/cev\/regadb. RegaDB is written in the Java programming language, using a web-service-oriented architecture.<\/jats:p>\n               <jats:p>Contact: \u00a0pieter.libin@rega.kuleuven.be<\/jats:p>","DOI":"10.1093\/bioinformatics\/btt162","type":"journal-article","created":{"date-parts":[[2013,5,4]],"date-time":"2013-05-04T00:13:25Z","timestamp":1367626405000},"page":"1477-1480","source":"Crossref","is-referenced-by-count":23,"title":["RegaDB: community-driven data management and analysis for infectious diseases"],"prefix":"10.1093","volume":"29","author":[{"given":"Pieter","family":"Libin","sequence":"first","affiliation":[{"name":"1 Department of Microbiology and Immunology, Rega Institute for Medical Research, KU Leuven, 3000 Leuven, Belgium, 2Mybiodata, Biomedical IT solutions, 3110 Rotselaar, Belgium, 3Internal Medicine, University Hospitals Leuven, 3000 Leuven, Belgium, 4Centro Hospitalar de Lisboa Ocidental, 1349-019 Lisbon, Portugal, 5Centro de Mal\u00e1ria e Outras Doen\u00e7as Tropicais, Instituto de Higiene e Medicina Tropical, Universidade Nova de Lisboa, 1349-008 Lisbon, Portugal, 6Department of Clinical and Experimental Sciences, University of Brescia, 25121 Brescia, Italy, 7High Performance Computing Center, University Stuttgart, 70049 Stuttgart, Germany, 8Universit\u00e9 Catholique de Louvain, 1348 Louvain-la-Neuve, Belgium, 9Clinical Biology, Universitair Ziekenhuis Brussel, 1090 Brussels, Belgium, 10Internal Medicine, Universitair Ziekenhuis Brussel, 1090 Brussels, Belgium, 11Department of Biotechnology, University of Siena, 53100 Siena, Italy, 12Institute of Virology, University of Cologne, 50923 Cologne, Germany, 13Institut de rech"},{"name":"1 Department of Microbiology and Immunology, Rega Institute for Medical Research, KU Leuven, 3000 Leuven, Belgium, 2Mybiodata, Biomedical IT solutions, 3110 Rotselaar, Belgium, 3Internal Medicine, University Hospitals Leuven, 3000 Leuven, Belgium, 4Centro Hospitalar de Lisboa Ocidental, 1349-019 Lisbon, Portugal, 5Centro de Mal\u00e1ria e Outras Doen\u00e7as Tropicais, Instituto de Higiene e Medicina Tropical, Universidade Nova de Lisboa, 1349-008 Lisbon, Portugal, 6Department of Clinical and Experimental Sciences, University of Brescia, 25121 Brescia, Italy, 7High Performance Computing Center, University Stuttgart, 70049 Stuttgart, Germany, 8Universit\u00e9 Catholique de Louvain, 1348 Louvain-la-Neuve, Belgium, 9Clinical Biology, Universitair Ziekenhuis Brussel, 1090 Brussels, Belgium, 10Internal Medicine, Universitair Ziekenhuis Brussel, 1090 Brussels, Belgium, 11Department of Biotechnology, University of Siena, 53100 Siena, Italy, 12Institute of Virology, University of Cologne, 50923 Cologne, Germany, 13Institut de rech"}]},{"given":"Gertjan","family":"Beheydt","sequence":"additional","affiliation":[{"name":"1 Department of Microbiology and Immunology, Rega Institute for Medical Research, KU Leuven, 3000 Leuven, Belgium, 2Mybiodata, Biomedical IT solutions, 3110 Rotselaar, Belgium, 3Internal 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for Medical Research, KU Leuven, 3000 Leuven, Belgium, 2Mybiodata, Biomedical IT solutions, 3110 Rotselaar, Belgium, 3Internal Medicine, University Hospitals Leuven, 3000 Leuven, Belgium, 4Centro Hospitalar de Lisboa Ocidental, 1349-019 Lisbon, Portugal, 5Centro de Mal\u00e1ria e Outras Doen\u00e7as Tropicais, Instituto de Higiene e Medicina Tropical, Universidade Nova de Lisboa, 1349-008 Lisbon, Portugal, 6Department of Clinical and Experimental Sciences, University of Brescia, 25121 Brescia, Italy, 7High Performance Computing Center, University Stuttgart, 70049 Stuttgart, Germany, 8Universit\u00e9 Catholique de Louvain, 1348 Louvain-la-Neuve, Belgium, 9Clinical Biology, Universitair Ziekenhuis Brussel, 1090 Brussels, Belgium, 10Internal Medicine, Universitair Ziekenhuis Brussel, 1090 Brussels, Belgium, 11Department of Biotechnology, University of Siena, 53100 Siena, Italy, 12Institute of Virology, University of Cologne, 50923 Cologne, Germany, 13Institut de rech"}]},{"given":"Stijn","family":"Imbrechts","sequence":"additional","affiliation":[{"name":"1 Department of Microbiology and Immunology, Rega Institute for Medical Research, KU Leuven, 3000 Leuven, Belgium, 2Mybiodata, Biomedical IT solutions, 3110 Rotselaar, Belgium, 3Internal Medicine, University Hospitals Leuven, 3000 Leuven, Belgium, 4Centro Hospitalar de Lisboa Ocidental, 1349-019 Lisbon, Portugal, 5Centro de Mal\u00e1ria e Outras Doen\u00e7as Tropicais, Instituto de Higiene e Medicina Tropical, Universidade Nova de Lisboa, 1349-008 Lisbon, Portugal, 6Department of Clinical and Experimental Sciences, University of Brescia, 25121 Brescia, Italy, 7High Performance Computing Center, University Stuttgart, 70049 Stuttgart, Germany, 8Universit\u00e9 Catholique de Louvain, 1348 Louvain-la-Neuve, Belgium, 9Clinical Biology, Universitair Ziekenhuis Brussel, 1090 Brussels, Belgium, 10Internal Medicine, Universitair Ziekenhuis Brussel, 1090 Brussels, Belgium, 11Department of 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Louvain-la-Neuve, Belgium, 9Clinical Biology, Universitair Ziekenhuis Brussel, 1090 Brussels, Belgium, 10Internal Medicine, Universitair Ziekenhuis Brussel, 1090 Brussels, Belgium, 11Department of Biotechnology, University of Siena, 53100 Siena, Italy, 12Institute of Virology, University of Cologne, 50923 Cologne, Germany, 13Institut de rech"}]},{"given":"Kristel","family":"Van Laethem","sequence":"additional","affiliation":[{"name":"1 Department of Microbiology and Immunology, Rega Institute for Medical Research, KU Leuven, 3000 Leuven, Belgium, 2Mybiodata, Biomedical IT solutions, 3110 Rotselaar, Belgium, 3Internal Medicine, University Hospitals Leuven, 3000 Leuven, Belgium, 4Centro Hospitalar de Lisboa Ocidental, 1349-019 Lisbon, Portugal, 5Centro de Mal\u00e1ria e Outras Doen\u00e7as Tropicais, Instituto de Higiene e Medicina Tropical, Universidade Nova de Lisboa, 1349-008 Lisbon, Portugal, 6Department of Clinical and Experimental Sciences, University of Brescia, 25121 Brescia, Italy, 7High Performance Computing Center, University Stuttgart, 70049 Stuttgart, Germany, 8Universit\u00e9 Catholique de Louvain, 1348 Louvain-la-Neuve, Belgium, 9Clinical Biology, Universitair Ziekenhuis Brussel, 1090 Brussels, Belgium, 10Internal Medicine, Universitair Ziekenhuis Brussel, 1090 Brussels, Belgium, 11Department of Biotechnology, University of Siena, 53100 Siena, Italy, 12Institute of Virology, University of Cologne, 50923 Cologne, Germany, 13Institut de rech"},{"name":"1 Department of Microbiology and Immunology, Rega Institute for Medical Research, KU Leuven, 3000 Leuven, Belgium, 2Mybiodata, Biomedical IT solutions, 3110 Rotselaar, Belgium, 3Internal Medicine, University Hospitals Leuven, 3000 Leuven, Belgium, 4Centro Hospitalar de Lisboa Ocidental, 1349-019 Lisbon, Portugal, 5Centro de Mal\u00e1ria e Outras Doen\u00e7as Tropicais, Instituto de Higiene e Medicina Tropical, Universidade Nova de Lisboa, 1349-008 Lisbon, Portugal, 6Department of Clinical and 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