{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,29]],"date-time":"2026-04-29T20:47:11Z","timestamp":1777495631213,"version":"3.51.4"},"reference-count":6,"publisher":"Oxford University Press (OUP)","issue":"4","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2016,2,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Motivation: TCS is a widely used haplotype network reconstruction software, but lacks the capability of overlapping genetic with geographic structure, which is often a first step in phylogeographic analysis.<\/jats:p>\n               <jats:p>Results: tcsBU is a web-based program that extends the capabilities of TCS, by implementing haplotype classification into an arbitrary user-defined scheme, which is displayed as pie-chart like graphs embedded into the network. Taking advantage of modern graphic libraries, tcsBU also improves the speed at which the final network layout is reached. Networks can be saved as a Scalable Vector Graphics format.<\/jats:p>\n               <jats:p>Availability and implementation: tcsBU is available on-line at http:\/\/cibio.up.pt\/software\/tcsBU\/. The source code is freely available from https:\/\/github.com\/sairum\/tcsbu\/ under a standard MIT license.<\/jats:p>\n               <jats:p>Contact: \u00a0amsantos@fc.up.pt<\/jats:p>","DOI":"10.1093\/bioinformatics\/btv636","type":"journal-article","created":{"date-parts":[[2015,10,29]],"date-time":"2015-10-29T22:48:35Z","timestamp":1446158915000},"page":"627-628","source":"Crossref","is-referenced-by-count":302,"title":["tcsBU: a tool to extend TCS network layout and visualization"],"prefix":"10.1093","volume":"32","author":[{"given":"Ant\u00f3nio","family":"M\u00farias dos Santos","sequence":"first","affiliation":[{"name":"1 Faculdade de Ci\u00eancias da Universidade do Porto, 4169-007 Porto, Portugal"},{"name":"2 CIBIO, Centro de Investiga\u00e7\u00e3o em Biodiversidade e Recursos Gen\u00e9ticos, Campus Agr\u00e1rio de Vair\u00e3o, 4485-661 Vair\u00e3o, Portugal and"}]},{"given":"Maria Pilar","family":"Cabezas","sequence":"additional","affiliation":[{"name":"2 CIBIO, Centro de Investiga\u00e7\u00e3o em Biodiversidade e Recursos Gen\u00e9ticos, Campus Agr\u00e1rio de Vair\u00e3o, 4485-661 Vair\u00e3o, Portugal and"}]},{"given":"Ana Isabel","family":"Tavares","sequence":"additional","affiliation":[{"name":"1 Faculdade de Ci\u00eancias da Universidade do Porto, 4169-007 Porto, Portugal"},{"name":"2 CIBIO, Centro de Investiga\u00e7\u00e3o em Biodiversidade e Recursos Gen\u00e9ticos, Campus Agr\u00e1rio de Vair\u00e3o, 4485-661 Vair\u00e3o, Portugal and"}]},{"given":"Raquel","family":"Xavier","sequence":"additional","affiliation":[{"name":"2 CIBIO, Centro de Investiga\u00e7\u00e3o em Biodiversidade e Recursos Gen\u00e9ticos, Campus Agr\u00e1rio de Vair\u00e3o, 4485-661 Vair\u00e3o, Portugal and"},{"name":"3 School of Biological Sciences, Cardiff University, Cardiff, CF10 3AX, UK"}]},{"given":"Madalena","family":"Branco","sequence":"additional","affiliation":[{"name":"2 CIBIO, Centro de Investiga\u00e7\u00e3o em Biodiversidade e Recursos Gen\u00e9ticos, Campus Agr\u00e1rio de Vair\u00e3o, 4485-661 Vair\u00e3o, Portugal and"}]}],"member":"286","published-online":{"date-parts":[[2015,10,29]]},"reference":[{"key":"2023020110350756500_btv636-B1","doi-asserted-by":"crossref","first-page":"743","DOI":"10.1093\/genetics\/141.2.743","article-title":"Mitochondrial portraits of human populations using median networks","volume":"141","author":"Bandelt","year":"1995","journal-title":"Genetics"},{"key":"2023020110350756500_btv636-B2","doi-asserted-by":"crossref","first-page":"37","DOI":"10.1093\/oxfordjournals.molbev.a026036","article-title":"Median-joining networks for inferring intraspecific phylogenies","volume":"16","author":"Bandelt","year":"1999","journal-title":"Mol. 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