{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,10]],"date-time":"2026-03-10T08:32:38Z","timestamp":1773131558219,"version":"3.50.1"},"reference-count":100,"publisher":"Oxford University Press (OUP)","issue":"4","license":[{"start":{"date-parts":[[2020,1,31]],"date-time":"2020-01-31T00:00:00Z","timestamp":1580428800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/open_access\/funder_policies\/chorus\/standard_publication_model"}],"funder":[{"name":"SYNTHESYS programme","award":["FR-TAF-3697"],"award-info":[{"award-number":["FR-TAF-3697"]}]},{"DOI":"10.13039\/501100001824","name":"Czech Science Foundation","doi-asserted-by":"publisher","award":["15-20229S"],"award-info":[{"award-number":["15-20229S"]}],"id":[{"id":"10.13039\/501100001824","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Global Emerging Infections Surveillance and Response"},{"name":"US Armed Forces Health Surveillance Center","award":["C0238_10_N3"],"award-info":[{"award-number":["C0238_10_N3"]}]},{"name":"US Armed Forces Health Surveillance Center","award":["C0435_11_N3"],"award-info":[{"award-number":["C0435_11_N3"]}]},{"name":"US Armed Forces Health Surveillance Center","award":["C0687_12_N3"],"award-info":[{"award-number":["C0687_12_N3"]}]},{"name":"European Foundation Initiative for African Research into Neglected Tropical Diseases","award":["1\/85\/022"],"award-info":[{"award-number":["1\/85\/022"]}]},{"name":"European Foundation Initiative for African Research into Neglected Tropical Diseases","award":["89 540"],"award-info":[{"award-number":["89 540"]}]},{"DOI":"10.13039\/501100001659","name":"German Research Foundation","doi-asserted-by":"publisher","award":["FI 1781\/2-1"],"award-info":[{"award-number":["FI 1781\/2-1"]}],"id":[{"id":"10.13039\/501100001659","id-type":"DOI","asserted-by":"publisher"}]},{"name":"National Geographic Foundation","award":["GEFNE53-12"],"award-info":[{"award-number":["GEFNE53-12"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2020,3,28]]},"abstract":"<jats:title>Abstract<\/jats:title><jats:p>The murid rodent Praomys daltoni is widespread in Sudanian savanna and woodlands of West Africa, and previous study of mitochondrial DNA variability suggested that it encompasses the phenotypically (small, grey-bellied) and ecologically (commensal) distinct form, Praomys derooi. Here, we comprehensively examined the genetic and morphological diversity within the complex. Six mitochondrial lineages showed a fine-scale phylogeographical pattern, whereas delimitation based on nuclear loci pooled four of them into a single widespread unit. A newly discovered lineage from southern Mauritania stands apart from the rest of the complex and might represent an unrecognized species. At the same time, the internal position of P. derooi (C2 mitochondrial lineage) was confirmed by the multilocus analysis. The magnitude of genetic distances between major phylogeographical lineages was typical for interspecific divergence in other clades of Praomys, despite the little differences among them in morphology (skull and upper molar row shapes). The most pronounced morphological shift was associated with a transition to commensalism, especially in P. derooi, but also in other lineages. This makes the whole complex a suitable model for the study of phenotypic novelty, the evolution of commensalism and conditions for ecological speciation.<\/jats:p>","DOI":"10.1093\/biolinnean\/blz184","type":"journal-article","created":{"date-parts":[[2020,1,29]],"date-time":"2020-01-29T12:15:15Z","timestamp":1580300115000},"page":"931-949","source":"Crossref","is-referenced-by-count":12,"title":["Commensalism outweighs phylogeographical structure in its effect on phenotype of a Sudanian savanna rodent"],"prefix":"10.1093","volume":"129","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-4361-0581","authenticated-orcid":false,"given":"Ond\u0159ej","family":"Mikula","sequence":"first","affiliation":[{"name":"Institute of Vertebrate Biology, Czech Academy of Sciences, Brno, Czech Republic"},{"name":"Institute of Animal Physiology and Genetics, Czech Academy of Sciences, Brno, Czech Republic"},{"name":"Faculty of Science, University of South Bohemia, \u010cesk\u00e9 Bud\u011bjovice, Czech Republic"}]},{"given":"Violaine","family":"Nicolas","sequence":"first","affiliation":[{"name":"Mus\u00e9um National d\u2019Histoire Naturelle, Institute of Systematics and Evolution of the Biodiversity, UMR7205 CNRS-MNHN-UPMC-EPHE-Sorbonne University, Paris, France"}]},{"given":"Zbyszek","family":"Boraty\u0144ski","sequence":"first","affiliation":[{"name":"CIBIO-InBIO Associate Laboratory, Research Center in Biodiversity and Genetic Resources, University of Porto, Vair\u00e3o, Portugal"}]},{"given":"Christiane","family":"Denys","sequence":"first","affiliation":[{"name":"Mus\u00e9um National d\u2019Histoire Naturelle, Institute of Systematics and Evolution of the Biodiversity, UMR7205 CNRS-MNHN-UPMC-EPHE-Sorbonne University, Paris, France"}]},{"given":"Gauthier","family":"Dobigny","sequence":"first","affiliation":[{"name":"CBGP, IRD, CIRAD, INRA, Montpellier SupAgro, University of Montpellier, Montpellier, France"},{"name":"Ecole Polytechnique d\u2019Abomey-Calavi, Abomey-Calavi University, Cotonou, Benin"}]},{"given":"Elisabeth","family":"Fichet-Calvet","sequence":"first","affiliation":[{"name":"Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany"}]},{"given":"Sama","family":"Gagar\u00e9","sequence":"first","affiliation":[{"name":"Centre R\u00e9gional Agrhymet, D\u00e9partement Formation Recherche, Niamey, Niger"}]},{"given":"Rainer","family":"Hutterer","sequence":"first","affiliation":[{"name":"Zoologisches Forschungsinstitut und Museum Alexander Koenig, Bonn, Germany"}]},{"given":"Shirley Cameron","family":"Nimo-Paintsil","sequence":"first","affiliation":[{"name":"United States Naval Medical Research Unit No. 3 Ghana Detachment, Accra, Ghana"}]},{"given":"Ayodeji","family":"Olayemi","sequence":"first","affiliation":[{"name":"Natural History Museum, Obafemi Awolowo University, Ile Ife, Osun State, Nigeria"}]},{"given":"Josef","family":"Bryja","sequence":"first","affiliation":[{"name":"Institute of Vertebrate Biology, Czech Academy of Sciences, Brno, Czech Republic"},{"name":"Department of Botany and Zoology, Faculty of Science, Masaryk University, Brno, Czech Republic"}]}],"member":"286","published-online":{"date-parts":[[2020,1,31]]},"reference":[{"key":"2020032807351151200_CIT0001","author":"Adams","year":"2018"},{"key":"2020032807351151200_CIT0002","author":"Adler","year":"2005"},{"key":"2020032807351151200_CIT0003","author":"Adler","year":"2018"},{"key":"2020032807351151200_CIT0004","doi-asserted-by":"crossref","first-page":"98","DOI":"10.1016\/j.ympev.2018.07.017","article-title":"Fossils know it best: using a new set of fossil calibrations to improve the temporal phylogenetic framework of murid rodents (Rodentia: Muridae)","volume":"128","author":"Aghov\u00e1","year":"2018","journal-title":"Molecular Phylogenetics and Evolution"},{"key":"2020032807351151200_CIT0005","doi-asserted-by":"crossref","first-page":"21","DOI":"10.11646\/zootaxa.1607.1.2","article-title":"Morphometric differentiation between two murid rodents, Praomys tullbergi (Thomas, 1894) and Praomys rostratus (Miller, 1900) in West Africa","volume":"1607","author":"Akpatou","year":"2007","journal-title":"Zootaxa"},{"key":"2020032807351151200_CIT0006","doi-asserted-by":"crossref","first-page":"874","DOI":"10.1093\/czoolo\/61.5.874","article-title":"The impact of ancestral population size and incomplete lineage sorting on Bayesian estimation of species divergence times","volume":"61","author":"Angelis","year":"2015","journal-title":"Current Zoology"},{"key":"2020032807351151200_CIT0007","doi-asserted-by":"crossref","first-page":"489","DOI":"10.1146\/annurev.es.18.110187.002421","article-title":"Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics","volume":"18","author":"Avise","year":"1987","journal-title":"Annual Review of Ecology and Systematics"},{"key":"2020032807351151200_CIT0008","doi-asserted-by":"crossref","first-page":"1707","DOI":"10.1098\/rspb.1998.0492","article-title":"Speciation durations and Pleistocene effects on vertebrate phylogeography","volume":"265","author":"Avise","year":"1998","journal-title":"Proceedings of the Royal Society B: Biological Sciences"},{"key":"2020032807351151200_CIT0009","doi-asserted-by":"crossref","first-page":"485","DOI":"10.1007\/s13364-018-0377-x","article-title":"The effect of rainfall on population dynamics in Sahara-Sahel rodents","volume":"63","author":"Barros","year":"2018","journal-title":"Mammal Research"},{"key":"2020032807351151200_CIT0010","doi-asserted-by":"crossref","first-page":"291","DOI":"10.1093\/sysbio\/syr010","article-title":"Performance, accuracy, and Web server for evolutionary placement of short sequence reads under maximum likelihood","volume":"60","author":"Berger","year":"2011","journal-title":"Systematic Biology"},{"key":"2020032807351151200_CIT0011","author":"Bivand","year":"2018"},{"key":"2020032807351151200_CIT0012","doi-asserted-by":"crossref","first-page":"390","DOI":"10.1016\/j.gloplacha.2010.01.015","article-title":"Cenozoic vegetation, climate changes and hominid evolution in tropical Africa","volume":"72","author":"Bonnefille","year":"2010","journal-title":"Global and Planetary Change"},{"key":"2020032807351151200_CIT0013","doi-asserted-by":"crossref","first-page":"3522","DOI":"10.1038\/s41598-017-03444-y","article-title":"Repeated evolution of camouflage in speciose desert rodents","volume":"7","author":"Boraty\u0144ski","year":"2017","journal-title":"Scientific Reports"},{"key":"2020032807351151200_CIT0014","doi-asserted-by":"crossref","first-page":"e94342","DOI":"10.1371\/journal.pone.0094342","article-title":"Large spatial scale of the phenotype-environment color matching in two cryptic species of African desert jerboas (Dipodidae: Jaculus)","volume":"9","author":"Boraty\u0144ski","year":"2014","journal-title":"PLoS ONE"},{"key":"2020032807351151200_CIT0015","first-page":"17","article-title":"The Sudano-Sahelian Dalton\u2019s mouse, Praomys daltoni, in Mauritania, Eastern Assaba mountains","volume":"10","author":"Boraty\u0144ski","year":"2013","journal-title":"Go-South Bulletin"},{"key":"2020032807351151200_CIT0016","doi-asserted-by":"crossref","first-page":"1372","DOI":"10.1093\/bioinformatics\/btq110","article-title":"DensiTree: making sense of sets of phylogenetic trees","volume":"26","author":"Bouckaert","year":"2010","journal-title":"Bioinformatics"},{"key":"2020032807351151200_CIT0017","doi-asserted-by":"crossref","first-page":"e1003537","DOI":"10.1371\/journal.pcbi.1003537","article-title":"BEAST 2: a software platform for Bayesian evolutionary analysis","volume":"10","author":"Bouckaert","year":"2014","journal-title":"PLoS Computational Biology"},{"key":"2020032807351151200_CIT0018","doi-asserted-by":"crossref","first-page":"2237","DOI":"10.1111\/j.1365-2699.2009.02184.x","article-title":"Phylogeography of the Guinea multimammate mouse (Mastomys erythroleucus): a case study for Sahelian species in West Africa","volume":"36","author":"Brouat","year":"2009","journal-title":"Journal of Biogeography"},{"key":"2020032807351151200_CIT0019","doi-asserted-by":"crossref","first-page":"4783","DOI":"10.1111\/j.1365-294X.2010.04847.x","article-title":"Plio-Pleistocene history of West African Sudanian savanna and the phylogeography of the Praomys daltoni complex (Rodentia): the environment\/geography\/genetic interplay","volume":"19","author":"Bryja","year":"2010","journal-title":"Molecular Ecology"},{"key":"2020032807351151200_CIT0020","doi-asserted-by":"crossref","first-page":"51","DOI":"10.1016\/j.mambio.2010.02.002","article-title":"A spatio-temporal decrease in molar size in the western European house mouse","volume":"76","author":"Cassaing","year":"2011","journal-title":"Mammalian Biology"},{"key":"2020032807351151200_CIT0021","doi-asserted-by":"crossref","first-page":"797","DOI":"10.1016\/j.ympev.2006.10.001","article-title":"Evolutionary systematics in African gerbilline rodents of the genus Gerbilliscus: inference from mitochondrial genes","volume":"42","author":"Colangelo","year":"2007","journal-title":"Molecular Phylogenetics and Evolution"},{"key":"2020032807351151200_CIT0022","doi-asserted-by":"crossref","first-page":"901","DOI":"10.1111\/bij.12013","article-title":"A mitochondrial phylogeographic scenario for the most widespread African rodent, Mastomys natalensis","volume":"108","author":"Colangelo","year":"2013","journal-title":"Biological Journal of the Linnean Society"},{"key":"2020032807351151200_CIT0023","doi-asserted-by":"crossref","first-page":"e68","DOI":"10.1371\/journal.pgen.0020068","article-title":"Discordance of species trees with their most likely gene trees","volume":"2","author":"Degnan","year":"2006","journal-title":"PLoS Genetics"},{"key":"2020032807351151200_CIT0024","doi-asserted-by":"crossref","first-page":"332","DOI":"10.1016\/j.tree.2009.01.009","article-title":"Gene tree discordance, phylogenetic inference and the multispecies coalescent","volume":"24","author":"Degnan","year":"2009","journal-title":"Trends in Ecology & Evolution"},{"key":"2020032807351151200_CIT0025","doi-asserted-by":"crossref","first-page":"41","DOI":"10.1016\/j.ympev.2013.10.014","article-title":"Uncovering cryptic diversity and refugial persistence among small mammal lineages across the Eastern Afromontane biodiversity hotspot","volume":"71","author":"Demos","year":"2014","journal-title":"Molecular Phylogenetics and Evolution"},{"key":"2020032807351151200_CIT0026","first-page":"536","article-title":"Family Muridae (true mice and rats, gerbils and relatives)","volume-title":"Handbook of the mammals of the world. Volume 7: Rodents II","author":"Denys","year":"2017"},{"key":"2020032807351151200_CIT0027","doi-asserted-by":"crossref","first-page":"186","DOI":"10.1017\/CBO9781107360150.008","article-title":"Advances in integrative taxonomy and evolution of African murid rodents: how morphological trees hide the molecular forest","volume-title":"Evolution of the rodents: Advances in phylogeny, palaeontology and functional morphology","author":"Denys","year":"2015"},{"key":"2020032807351151200_CIT0028","doi-asserted-by":"crossref","first-page":"358","DOI":"10.1038\/sj.hdy.6800730","article-title":"Recent radiation in West African Taterillus (Rodentia, Gerbillinae): the concerted role of chromosome and climatic changes","volume":"95","author":"Dobigny","year":"2005","journal-title":"Heredity"},{"key":"2020032807351151200_CIT0029","first-page":"215","article-title":"Rodents from Adrar des Iforas. Chromosomal data","volume":"65","author":"Dobigny","year":"2001","journal-title":"Mammalia"},{"key":"2020032807351151200_CIT0030","doi-asserted-by":"crossref","first-page":"e77815","DOI":"10.1371\/journal.pone.0077815","article-title":"Mitochondrial and nuclear genes-based phylogeography of Arvicanthis niloticus (Murinae) and sub-Saharan open habitats Pleistocene history","volume":"8","author":"Dobigny","year":"2013","journal-title":"PLoS ONE"},{"key":"2020032807351151200_CIT0031","doi-asserted-by":"crossref","DOI":"10.1002\/9781119072492","volume-title":"Statistical shape analysis, with applications in R","author":"Dryden","year":"2016","edition":"2nd"},{"key":"2020032807351151200_CIT0032","doi-asserted-by":"crossref","first-page":"3589","DOI":"10.1016\/j.quascirev.2011.09.019","article-title":"Orbital scale vegetation change in Africa","volume":"30","author":"Dupont","year":"2011","journal-title":"Quaternary Science Reviews"},{"key":"2020032807351151200_CIT0033","doi-asserted-by":"crossref","first-page":"8025","DOI":"10.1073\/pnas.1601066113","article-title":"Reticulation, divergence, and the phylogeography\u2013phylogenetics continuum","volume":"113","author":"Edwards","year":"2016","journal-title":"Proceedings of the National Academy of Sciences of the United States of America"},{"key":"2020032807351151200_CIT0034","doi-asserted-by":"crossref","first-page":"954","DOI":"10.1139\/z97-115","article-title":"Decrease in litter size in the shrew Crocidura suaveolens (Mammalia, Insectivora) from Corsica (France): evolutionary response to insularity?","volume":"75","author":"Fons","year":"1997","journal-title":"Canadian Journal of Zoology"},{"key":"2020032807351151200_CIT0035","doi-asserted-by":"crossref","first-page":"1865","DOI":"10.1111\/j.1558-5646.2010.00960.x","article-title":"Evolutionary constraint and ecological consequences","volume":"64","author":"Futuyma","year":"2010","journal-title":"Evolution; international journal of organic evolution"},{"key":"2020032807351151200_CIT0036","doi-asserted-by":"crossref","first-page":"e48374","DOI":"10.1371\/journal.pone.0048374","article-title":"Next-generation sequencing for rodent barcoding: species identification from fresh, degraded and environmental samples","volume":"7","author":"Galan","year":"2012","journal-title":"PLoS ONE"},{"key":"2020032807351151200_CIT0037","doi-asserted-by":"crossref","first-page":"172099","DOI":"10.1098\/rsos.172099","article-title":"A longitudinal study of phenotypic changes in early domestication of house mice","volume":"5","author":"Geiger","year":"2018","journal-title":"Royal Society Open Science"},{"key":"2020032807351151200_CIT0038","doi-asserted-by":"crossref","first-page":"e1006073","DOI":"10.1371\/journal.ppat.1006073","article-title":"When viruses don\u2019t go viral: the importance of host phylogeographic structure in the spatial spread of arenaviruses","volume":"13","author":"Gryseels","year":"2017","journal-title":"PLoS Pathogens"},{"key":"2020032807351151200_CIT0039","doi-asserted-by":"crossref","first-page":"247","DOI":"10.1006\/bijl.1996.0035","article-title":"Some genetic consequences of ice ages, and their role in divergence and speciation","volume":"58","author":"Hewitt","year":"1996","journal-title":"Biological Journal of the Linnean Society"},{"key":"2020032807351151200_CIT0040","doi-asserted-by":"crossref","first-page":"1561","DOI":"10.1093\/molbev\/msi145","article-title":"Time dependency of molecular rate estimates and systematic overestimation of recent divergence times","volume":"22","author":"Ho","year":"2005","journal-title":"Molecular Biology and Evolution"},{"key":"2020032807351151200_CIT0041","doi-asserted-by":"crossref","first-page":"1329","DOI":"10.1111\/j.0014-3820.2004.tb01711.x","article-title":"Ecological genetics of adaptive color polymorphism in pocket mice: geographic variation in selected and neutral genes","volume":"58","author":"Hoekstra","year":"2004","journal-title":"Evolution; international journal of organic evolution"},{"key":"2020032807351151200_CIT0042","first-page":"65","article-title":"A simple sequentially rejective multiple test procedure","volume":"6","author":"Holm","year":"1979","journal-title":"Scandinavian Journal of Statistics"},{"key":"2020032807351151200_CIT0043","doi-asserted-by":"crossref","first-page":"633","DOI":"10.1016\/j.tree.2016.05.001","article-title":"An ecological and evolutionary framework for commensalism in anthropogenic environments","volume":"31","author":"Hulme-Beaman","year":"2016","journal-title":"Trends in Ecology & Evolution"},{"key":"2020032807351151200_CIT0044","doi-asserted-by":"crossref","first-page":"13","DOI":"10.1080\/15627020.2013.11407565","article-title":"A new status for two African giant forest shrew Crocidura goliath goliath and Crocidura goliath nimbasilvanus (Mammalia: Soricomorpha), based on molecular and geometric morphometric analyses","volume":"48","author":"Jacquet","year":"2013","journal-title":"African Zoology"},{"key":"2020032807351151200_CIT0045","doi-asserted-by":"crossref","first-page":"447","DOI":"10.1007\/s00285-016-1034-0","article-title":"Algorithmic improvements to species delimitation and phylogeny estimation under the multispecies coalescent","volume":"74","author":"Jones","year":"2017","journal-title":"Journal of Mathematical Biology"},{"key":"2020032807351151200_CIT0046","first-page":"19","article-title":"Divergence estimation in the presence of incomplete lineage sorting and migration","volume":"68","author":"Jones","year":"2019","journal-title":"Systematic Biology"},{"key":"2020032807351151200_CIT0047","doi-asserted-by":"crossref","first-page":"991","DOI":"10.1093\/bioinformatics\/btu770","article-title":"DISSECT: an assignment-free Bayesian discovery method for species delimitation under the multispecies coalescent","volume":"31","author":"Jones","year":"2015","journal-title":"Bioinformatics"},{"key":"2020032807351151200_CIT0048","doi-asserted-by":"crossref","first-page":"1630","DOI":"10.1093\/bioinformatics\/btx025","article-title":"Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo","volume":"33","author":"Kapli","year":"2017","journal-title":"Bioinformatics"},{"key":"2020032807351151200_CIT0049","first-page":"823","article-title":"[Effect of selection for behavior on the cranial traits of the American mink (Mustela vison)]","volume":"36","author":"Kharlamova","year":"2000","journal-title":"Genetika"},{"key":"2020032807351151200_CIT0050","doi-asserted-by":"crossref","first-page":"111","DOI":"10.1007\/BF01731581","article-title":"A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences","volume":"16","author":"Kimura","year":"1980","journal-title":"Journal of Molecular Evolution"},{"key":"2020032807351151200_CIT0051","volume-title":"Consequences of anthropogenic changes on rodent communities and populations: study cases on native and introduced species in Eastern Senegal","author":"Kone\u010dn\u00fd","year":"2009"},{"key":"2020032807351151200_CIT0052","doi-asserted-by":"crossref","first-page":"1832","DOI":"10.3201\/eid1911.121491","article-title":"Two novel arenaviruses detected in pygmy mice, Ghana","volume":"19","author":"Kronmann","year":"2013","journal-title":"Emerging Infectious Diseases"},{"key":"2020032807351151200_CIT0053","doi-asserted-by":"crossref","first-page":"71","DOI":"10.1515\/mammalia-2015-0148","article-title":"Phylogenetic position of a monotypic Ethiopian endemic rodent genus Megadendromus (Nesomyidae)","volume":"81","author":"Lavrenchenko","year":"2017","journal-title":"Mammalia"},{"key":"2020032807351151200_CIT0054","doi-asserted-by":"crossref","first-page":"1464","DOI":"10.1093\/beheco\/arx109","article-title":"Fat and happy in the city: eastern chipmunks in urban environments","volume":"28","author":"Lyons","year":"2017","journal-title":"Behavioral Ecology"},{"key":"2020032807351151200_CIT0055","doi-asserted-by":"crossref","first-page":"523","DOI":"10.1093\/sysbio\/46.3.523","article-title":"Gene trees in species trees","volume":"46","author":"Maddison","year":"1997","journal-title":"Systematic Biology"},{"key":"2020032807351151200_CIT0056","doi-asserted-by":"crossref","first-page":"296","DOI":"10.1186\/1471-2148-8-296","article-title":"Island selection on mammalian life-histories: genetic differentiation in offspring size","volume":"8","author":"Mappes","year":"2008","journal-title":"BMC Evolutionary Biology"},{"key":"2020032807351151200_CIT0057","doi-asserted-by":"crossref","first-page":"365","DOI":"10.1006\/bijl.2001.0586","article-title":"Sympatric distribution of two cryptic bat species across Europe","volume":"74","author":"Mayer","year":"2001","journal-title":"Biological Journal of the Linnean Society"},{"key":"2020032807351151200_CIT0090","doi-asserted-by":"crossref","first-page":"373","DOI":"10.1515\/mammalia-2017-0001","article-title":"Phylogeography of a widespread sub-Saharan murid rodent Aethomys chrysophilus: the role of geographic barriers and paleoclimate in the Zambezian bioregion","volume":"82","author":"V","year":"2018.","journal-title":"Mammalia"},{"key":"2020032807351151200_CIT0058","doi-asserted-by":"crossref","first-page":"480","DOI":"10.1016\/S0169-5347(02)02579-X","article-title":"Speciation in nature: the threespine stickleback model systems","volume":"17","author":"McKinnon","year":"2002","journal-title":"Trends in Ecology & Evolution"},{"key":"2020032807351151200_CIT0059","doi-asserted-by":"crossref","first-page":"263","DOI":"10.1111\/j.1439-0469.2006.00390.x","article-title":"Morphological diversity of Old World rats and mice (Rodentia, Muridae) mandible in relation with phylogeny and adaptation","volume":"45","author":"Michaux","year":"2007","journal-title":"Journal of Zoological Systematics and Evolutionary Research"},{"key":"2020032807351151200_CIT0060","doi-asserted-by":"publisher","DOI":"10.1101\/419887","article-title":"Cutting tree branches to pick OTUs: a novel method of provisional species delimitation","volume":"419887","author":"Mikula","year":"2018","journal-title":"bioRxiv"},{"key":"2020032807351151200_CIT0061","doi-asserted-by":"crossref","first-page":"3223","DOI":"10.1242\/dev.121.10.3223","article-title":"Expression and transgenic studies of the mouse agouti gene provide insight into the mechanisms by which mammalian coat color patterns are generated","volume":"121","author":"Millar","year":"1995","journal-title":"Development"},{"key":"2020032807351151200_CIT0062","doi-asserted-by":"crossref","first-page":"671","DOI":"10.1002\/jqs.2893","article-title":"Drivers of ecosystem and climate change in tropical West Africa over the past 540 000 years","volume":"31","author":"Miller","year":"2016","journal-title":"Journal of Quaternary Science"},{"key":"2020032807351151200_CIT0063","doi-asserted-by":"crossref","first-page":"327","DOI":"10.1111\/j.1463-6409.2012.00541.x","article-title":"Systematics and diversification of Praomys species (Rodentia: Muridae) endemic to the Cameroon Volcanic Line (West Central Africa)","volume":"41","author":"Missoup","year":"2012","journal-title":"Zoologica Scripta"},{"key":"2020032807351151200_CIT0064","doi-asserted-by":"crossref","first-page":"100","DOI":"10.1007\/s11692-011-9109-8","article-title":"Linear discrimination, ordination, and the visualization of selection gradients in modern morphometrics","volume":"38","author":"Mitteroecker","year":"2011","journal-title":"Evolutionary Biology"},{"key":"2020032807351151200_CIT0065","doi-asserted-by":"crossref","first-page":"1466","DOI":"10.1111\/jbi.13604","article-title":"Genetic variation of the most abundant forest-dwelling murid rodents in Central Africa (Praomys jacksoni complex): evidence for Pleistocene refugia in both montane and lowland forests","volume":"46","author":"Mizerovsk\u00e1","year":"2019","journal-title":"Journal of Biogeography"},{"key":"2020032807351151200_CIT0066","first-page":"894","article-title":"Superfamily Muroidea","volume-title":"Mammal species of the world. A taxonomic and geographic reference, 3rd edn, Vol. 2","author":"Musser","year":"2005"},{"key":"2020032807351151200_CIT0067","doi-asserted-by":"crossref","first-page":"125","DOI":"10.1007\/s10709-004-2723-y","article-title":"The genetic basis of adaptation: lessons from concealing coloration in pocket mice","volume":"123","author":"Nachman","year":"2005","journal-title":"Genetica"},{"key":"2020032807351151200_CIT0068","doi-asserted-by":"crossref","DOI":"10.1093\/oso\/9780198575726.001.0001","volume-title":"Mosaic evolution of subterranean mammals \u2014 regression, progression and global convergence","author":"Nevo","year":"1999"},{"key":"2020032807351151200_CIT0069","doi-asserted-by":"crossref","first-page":"397","DOI":"10.1111\/j.1096-3642.2009.00602.x","article-title":"Molecular and morphometric variation in two sibling species of the genus Praomys (Rodentia: Muridae): implications for biogeography","volume":"160","author":"Nicolas","year":"2010","journal-title":"Zoological Journal of the Linnean Society"},{"key":"2020032807351151200_CIT0070","doi-asserted-by":"crossref","first-page":"2074","DOI":"10.1111\/j.1365-2699.2008.01950.x","article-title":"Phylogeographic structure and regional history of Lemniscomys striatus (Rodentia: Muridae) in tropical Africa","volume":"35","author":"Nicolas","year":"2008","journal-title":"Journal of Biogeography"},{"key":"2020032807351151200_CIT0071","doi-asserted-by":"crossref","first-page":"e36586","DOI":"10.1371\/journal.pone.0036586","article-title":"Assessment of three mitochondrial genes (16S, Cytb, CO1) for identifying species in the Praomyini tribe (Rodentia: Muridae)","volume":"7","author":"Nicolas","year":"2012","journal-title":"PLoS ONE"},{"key":"2020032807351151200_CIT0072","doi-asserted-by":"crossref","first-page":"187","DOI":"10.1016\/j.physbeh.2008.05.017","article-title":"The effects of sex, age and commensal way of life on levels of fecal glucocorticoid metabolites in spiny mice (Acomys cahirinus)","volume":"95","author":"Nov\u00e1kov\u00e1","year":"2008","journal-title":"Physiology & Behavior"},{"key":"2020032807351151200_CIT0073","doi-asserted-by":"crossref","first-page":"933","DOI":"10.1641\/0006-3568(2001)051[0933:TEOTWA]2.0.CO;2","article-title":"Terrestrial ecoregions of the World: a new map of life on Earth: a new global map of terrestrial ecoregions provides an innovative tool for conserving biodiversity","volume":"51","author":"Olson","year":"2001","journal-title":"BioScience"},{"key":"2020032807351151200_CIT0074","first-page":"568","article-title":"Relationships between gene trees and species trees","volume":"5","author":"Pamilo","year":"1988","journal-title":"Molecular Biology and Evolution"},{"key":"2020032807351151200_CIT0075","doi-asserted-by":"crossref","first-page":"526","DOI":"10.1093\/bioinformatics\/bty633","article-title":"ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R","volume":"35","author":"Paradis","year":"2019","journal-title":"Bioinformatics"},{"key":"2020032807351151200_CIT0076","first-page":"7","article-title":"CODA: convergence diagnosis and output analysis for MCMC","volume":"6","author":"Plummer","year":"2006","journal-title":"R News"},{"key":"2020032807351151200_CIT0077","volume-title":"R: a language and environment for statistical computing","author":"R Core Team","year":"2019"},{"key":"2020032807351151200_CIT0078","doi-asserted-by":"crossref","first-page":"1645","DOI":"10.1093\/genetics\/164.4.1645","article-title":"Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci","volume":"164","author":"Rannala","year":"2003","journal-title":"Genetics"},{"key":"2020032807351151200_CIT0079","doi-asserted-by":"crossref","first-page":"217","DOI":"10.1111\/j.2041-210X.2011.00169.x","article-title":"phytools: an R package for phylogenetic comparative biology (and other things)","volume":"3","author":"Revell","year":"2012","journal-title":"Methods in Ecology and Evolution"},{"key":"2020032807351151200_CIT0080","doi-asserted-by":"crossref","first-page":"539","DOI":"10.1093\/sysbio\/sys029","article-title":"MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space","volume":"61","author":"Ronquist","year":"2012","journal-title":"Systematic Biology"},{"key":"2020032807351151200_CIT0081","doi-asserted-by":"crossref","first-page":"255","DOI":"10.1007\/s11692-012-9171-x","article-title":"Goldilocks meets Santa Rosalia: an ephemeral speciation model explains patterns of diversification across time scales","volume":"39","author":"Rosenblum","year":"2012","journal-title":"Evolutionary Biology"},{"key":"2020032807351151200_CIT0082","doi-asserted-by":"crossref","first-page":"445","DOI":"10.1016\/j.anbehav.2003.12.009","article-title":"What, if anything, is the adaptive function of countershading?","volume":"68","author":"Ruxton","year":"2004","journal-title":"Animal Behaviour"},{"key":"2020032807351151200_CIT0083","doi-asserted-by":"crossref","first-page":"131","DOI":"10.3106\/041.041.0303","article-title":"Variation in the coat-color-controlling genes, Mc1r and Asip, in the house mouse Mus musculus from Madagascar","volume":"41","author":"Sakuma","year":"2016","journal-title":"Mammal Study"},{"key":"2020032807351151200_CIT0084","doi-asserted-by":"crossref","first-page":"592","DOI":"10.1093\/bioinformatics\/btq706","article-title":"phangorn: phylogenetic analysis in R","volume":"27","author":"Schliep","year":"2011","journal-title":"Bioinformatics"},{"key":"2020032807351151200_CIT0085","doi-asserted-by":"crossref","first-page":"372","DOI":"10.1016\/S0169-5347(01)02198-X","article-title":"Ecology and the origin of species","volume":"16","author":"Schluter","year":"2001","journal-title":"Trends in Ecology & Evolution"},{"key":"2020032807351151200_CIT0086","doi-asserted-by":"crossref","first-page":"e1924","DOI":"10.1371\/journal.pntd.0001924","article-title":"Endemic foci of the tick-borne relapsing fever spirochete Borrelia crocidurae in Mali, West Africa, and the potential for human infection","volume":"6","author":"Schwan","year":"2012","journal-title":"PLoS Neglected Tropical Diseases"},{"key":"2020032807351151200_CIT0087","doi-asserted-by":"crossref","first-page":"e0175043","DOI":"10.1371\/journal.pone.0175043","article-title":"Facial shape differences between rats selected for tame and aggressive behaviors","volume":"12","author":"Singh","year":"2017","journal-title":"PLoS ONE"},{"key":"2020032807351151200_CIT0088","author":"Snow","year":"2016"},{"key":"2020032807351151200_CIT0089","doi-asserted-by":"crossref","first-page":"471","DOI":"10.1093\/biolinnean\/bly218","article-title":"Back to the wild: does feralization affect the mandible of non-commensal house mice (Mus musculus domesticus)?","volume":"126","author":"Souquet","year":"2019","journal-title":"Biological Journal of the Linnean Society"},{"key":"2020032807351151200_CIT00901","doi-asserted-by":"crossref","first-page":"148","DOI":"10.1016\/1055-7903(92)90026-D","article-title":"A molecular perspective on mammalian evolution from the gene encoding interphotoreceptor retinoid binding protein, with convincing evidence for bat monophyly","volume":"1","author":"Stanhope","year":"1992","journal-title":"Molecular Phylogenetics and Evolution"},{"key":"2020032807351151200_CIT0091","doi-asserted-by":"crossref","first-page":"581","DOI":"10.1086\/491688","article-title":"Clustering of contact zones, hybrid zones, and phylogeographic breaks in North America","volume":"166","author":"Swenson","year":"2005","journal-title":"The American Naturalist"},{"key":"2020032807351151200_CIT0092","doi-asserted-by":"crossref","first-page":"188","DOI":"10.1038\/35003188","article-title":"Molecular evidence regarding the origin of echolocation and flight in bats","volume":"403","author":"Teeling","year":"2000","journal-title":"Nature"},{"key":"2020032807351151200_CIT0093","author":"Terryn","year":"2007"},{"key":"2020032807351151200_CIT0095","doi-asserted-by":"crossref","first-page":"349","DOI":"10.1002\/bies.200800070","article-title":"Animal evolution during domestication: the domesticated fox as a model","volume":"31","author":"Trut","year":"2009","journal-title":"Bioessays: news and reviews in molecular, cellular and developmental biology"},{"key":"2020032807351151200_CIT0096","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/j.palaeo.2014.09.023","article-title":"Pliocene environmental change in West Africa and the onset of strong NE trade winds (ODP Sites 659 and 658)","volume":"414","author":"Vall\u00e9","year":"2014","journal-title":"Palaeogeography, Palaeoclimatology, Palaeoecology"},{"key":"2020032807351151200_CIT0097","first-page":"31","article-title":"Taxonomical notes on the West-African Myomys with the description of Myomys derooi (Mammalia \u2014 Muridae)","volume":"43","author":"Van der Straeten","year":"1978","journal-title":"Zeitschrift f\u00fcr S\u00e4ugetierkunde"},{"key":"2020032807351151200_CIT0098","author":"Warren","year":"2016"},{"issue":"ser. 7","key":"2020032807351151200_CIT0099","doi-asserted-by":"crossref","first-page":"500","DOI":"10.1080\/00222930709487378","article-title":"List of a collection of small mammals made by Mr. A. L. Butler in the Bahr-el-Ghazal","volume":"20","author":"Wroughton","year":"1907","journal-title":"The Annals and Magazine of Natural History"},{"key":"2020032807351151200_CIT0100","doi-asserted-by":"crossref","first-page":"150","DOI":"10.1093\/sysbio\/syq085","article-title":"Improving marginal likelihood estimation for Bayesian phylogenetic model selection","volume":"60","author":"Xie","year":"2011","journal-title":"Systematic Biology"}],"container-title":["Biological Journal of the Linnean Society"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/biolinnean\/article-pdf\/129\/4\/931\/32976158\/blz184.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"http:\/\/academic.oup.com\/biolinnean\/article-pdf\/129\/4\/931\/32976158\/blz184.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,7,30]],"date-time":"2024-07-30T20:52:41Z","timestamp":1722372761000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/biolinnean\/article\/129\/4\/931\/5718290"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2020,1,31]]},"references-count":100,"journal-issue":{"issue":"4","published-online":{"date-parts":[[2020,1,31]]},"published-print":{"date-parts":[[2020,3,28]]}},"URL":"https:\/\/doi.org\/10.1093\/biolinnean\/blz184","relation":{},"ISSN":["0024-4066","1095-8312"],"issn-type":[{"value":"0024-4066","type":"print"},{"value":"1095-8312","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2020,4]]},"published":{"date-parts":[[2020,1,31]]}}}