{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,4]],"date-time":"2026-04-04T22:22:15Z","timestamp":1775341335739,"version":"3.50.1"},"reference-count":132,"publisher":"Oxford University Press (OUP)","issue":"2","license":[{"start":{"date-parts":[[2018,12,10]],"date-time":"2018-12-10T00:00:00Z","timestamp":1544400000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100001659","name":"Deutsche Forschungsgemeinschaft","doi-asserted-by":"publisher","award":["FZT 118"],"award-info":[{"award-number":["FZT 118"]}],"id":[{"id":"10.13039\/501100001659","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001659","name":"Deutsche Forschungsgemeinschaft","doi-asserted-by":"publisher","award":["SFB 1052"],"award-info":[{"award-number":["SFB 1052"]}],"id":[{"id":"10.13039\/501100001659","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001659","name":"Deutsche Forschungsgemeinschaft","doi-asserted-by":"publisher","award":["SPP 1738"],"award-info":[{"award-number":["SPP 1738"]}],"id":[{"id":"10.13039\/501100001659","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2019,2,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:sec>\n                    <jats:title>Background<\/jats:title>\n                    <jats:p>Lacerta viridis and Lacerta bilineata are sister species of European green lizards (eastern and western clades, respectively) that, until recently, were grouped together as the L. viridis complex. Genetic incompatibilities were observed between lacertid populations through crossing experiments, which led to the delineation of two separate species within the L. viridis complex. The population history of these sister species and processes driving divergence are unknown. We constructed the first high-quality de novo genome assemblies for both L. viridis and L. bilineata through Illumina and PacBio sequencing, with annotation support provided from transcriptome sequencing of several tissues. To estimate gene flow between the two species and identify factors involved in reproductive isolation, we studied their evolutionary history, identified genomic rearrangements, detected signatures of selection on non-coding RNA, and on protein-coding genes.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Findings<\/jats:title>\n                    <jats:p>Here we show that gene flow was primarily unidirectional from L. bilineata to L. viridis after their split at least 1.15 million years ago. We detected positive selection of the non-coding repertoire; mutations in transcription factors; accumulation of divergence through inversions; selection on genes involved in neural development, reproduction, and behavior, as well as in ultraviolet-response, possibly driven by sexual selection, whose contribution to reproductive isolation between these lacertid species needs to be further evaluated.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Conclusion<\/jats:title>\n                    <jats:p>The combination of short and long sequence reads resulted in one of the most complete lizard genome assemblies. The characterization of a diverse array of genomic features provided valuable insights into the demographic history of divergence among European green lizards, as well as key species differences, some of which are candidates that could have played a role in speciation. In addition, our study generated valuable genomic resources that can be used to address conservation-related issues in lacertids.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1093\/gigascience\/giy160","type":"journal-article","created":{"date-parts":[[2018,12,10]],"date-time":"2018-12-10T09:55:01Z","timestamp":1544435701000},"source":"Crossref","is-referenced-by-count":8,"title":["Divergent evolution in the genomes of closely related lacertids,\n                    <i>Lacerta viridis<\/i>\n                    and\n                    <i>L. bilineata<\/i>\n                    , and implications for speciation"],"prefix":"10.1093","volume":"8","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-7839-735X","authenticated-orcid":false,"given":"Sree Rohit Raj","family":"Kolora","sequence":"first","affiliation":[{"name":"German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, Leipzig, 04103, Germany"},{"name":"Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, Universit\u00e4t Leipzig, H\u00e4rtelstrasse 16-18, Leipzig, 04107, Germany"},{"name":"Molecular Evolution and Systematics of Animals, Institute of Biology, University of Leipzig, Talstrasse 33, Leipzig, 04103, Germany"}]},{"given":"Anne","family":"Weigert","sequence":"additional","affiliation":[{"name":"Molecular Evolution and Systematics of Animals, Institute of Biology, University of Leipzig, Talstrasse 33, Leipzig, 04103, Germany"},{"name":"Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, Leipzig, 04103, Germany"}]},{"given":"Amin","family":"Saffari","sequence":"additional","affiliation":[{"name":"Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, Universit\u00e4t Leipzig, H\u00e4rtelstrasse 16-18, Leipzig, 04107, Germany"},{"name":"Human Biology Group, Institute for Zoology, Department of Biology, Chemistry and Pharmacy, Freie Universit\u00e4t Berlin, K\u00f6nigin-Luise-Stra\u00dfe 1\u20133, Berlin, D-14195, Germany"}]},{"given":"Stephanie","family":"Kehr","sequence":"additional","affiliation":[{"name":"Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, Universit\u00e4t Leipzig, H\u00e4rtelstrasse 16-18, Leipzig, 04107, Germany"}]},{"given":"Maria Beatriz","family":"Walter Costa","sequence":"additional","affiliation":[{"name":"Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, Universit\u00e4t Leipzig, H\u00e4rtelstrasse 16-18, Leipzig, 04107, Germany"},{"name":"Embrapa Agroenergia, Parque Estacaeo Biologica (PqEB), Asa Norte, Brasilia\/DF, 70770-901, Brazil"}]},{"given":"Cathrin","family":"Spr\u00f6er","sequence":"additional","affiliation":[{"name":"Department of Microbial Ecology and Diversity Research, Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Inhoffenstrasse 7B, 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Kingdom"}]},{"given":"Gero","family":"Doose","sequence":"additional","affiliation":[{"name":"Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, Universit\u00e4t Leipzig, H\u00e4rtelstrasse 16-18, Leipzig, 04107, Germany"}]},{"given":"J\u00f6rg","family":"Overmann","sequence":"additional","affiliation":[{"name":"German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, Leipzig, 04103, Germany"},{"name":"Department of Microbial Ecology and Diversity Research, Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Inhoffenstrasse 7B, Braunschweig, 38124, Germany"}]},{"given":"Boyke","family":"Bunk","sequence":"additional","affiliation":[{"name":"Department of Microbial Ecology and Diversity Research, Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Inhoffenstrasse 7B, Braunschweig, 38124, 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