{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,8]],"date-time":"2026-02-08T01:51:06Z","timestamp":1770515466635,"version":"3.49.0"},"reference-count":115,"publisher":"Oxford University Press (OUP)","issue":"12","license":[{"start":{"date-parts":[[2022,4,16]],"date-time":"2022-04-16T00:00:00Z","timestamp":1650067200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/open_access\/funder_policies\/chorus\/standard_publication_model"}],"funder":[{"name":"Funda\u00e7\u00e3o para a Ci\u00eancia e Tecnologia","award":["PTDC\/BIA-FBT\/31070\/2017"],"award-info":[{"award-number":["PTDC\/BIA-FBT\/31070\/2017"]}]},{"name":"Sustainability R&D Unit","award":["UIDB\/04551\/2020"],"award-info":[{"award-number":["UIDB\/04551\/2020"]}]},{"name":"Sustainability R&D Unit","award":["UIDP\/04551\/2020"],"award-info":[{"award-number":["UIDP\/04551\/2020"]}]},{"name":"Sustainability R&D Unit","award":["PD\/BD\/114416\/2016"],"award-info":[{"award-number":["PD\/BD\/114416\/2016"]}]},{"name":"Sustainability R&D Unit","award":["UI\/BD\/151210\/2021"],"award-info":[{"award-number":["UI\/BD\/151210\/2021"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2022,6,24]]},"abstract":"<jats:title>Abstract<\/jats:title><jats:p>Light is a key determinant for plant growth, development, and ultimately yield. Phytochromes, red\/far-red photoreceptors, play an important role in plant architecture, stress tolerance, and productivity. In the model plant Arabidopsis, it has been shown that PHYTOCHROME-INTERACTING FACTORS (PIFs; bHLH transcription factors) act as central hubs in the integration of external stimuli to regulate plant development. Recent studies have unveiled the importance of PIFs in crops. They are involved in the modulation of plant architecture and productivity through the regulation of cell division and elongation in response to different environmental cues. These studies show that different PIFs have overlapping but also distinct functions in the regulation of plant growth. Therefore, understanding the molecular mechanisms by which PIFs regulate plant development is crucial to improve crop productivity under both optimal and adverse environmental conditions. In this review, we discuss current knowledge of PIFs acting as integrators of light and other signals in different crops, with particular focus on the role of PIFs in responding to different environmental conditions and how this can be used to improve crop productivity.<\/jats:p>","DOI":"10.1093\/jxb\/erac142","type":"journal-article","created":{"date-parts":[[2022,4,14]],"date-time":"2022-04-14T11:15:45Z","timestamp":1649934945000},"page":"3881-3897","source":"Crossref","is-referenced-by-count":38,"title":["PHYTOCHROME-INTERACTING FACTORS: a promising tool to improve crop productivity"],"prefix":"10.1093","volume":"73","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-7299-8944","authenticated-orcid":false,"given":"Andr\u00e9 M","family":"Cordeiro","sequence":"first","affiliation":[{"name":"Instituto de Tecnologia Qu\u00edmica e Biol\u00f3gica Ant\u00f3nio Xavier, Universidade Nova de Lisboa , Av. da Rep\u00fablica, 2780-157 Oeiras , Portugal"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4869-8810","authenticated-orcid":false,"given":"Luis","family":"Andrade","sequence":"additional","affiliation":[{"name":"Instituto de Tecnologia Qu\u00edmica e Biol\u00f3gica Ant\u00f3nio Xavier, Universidade Nova de Lisboa , Av. da Rep\u00fablica, 2780-157 Oeiras , Portugal"},{"name":"Leibniz-Institut f\u00fcr Gem\u00fcse- und Zierpflanzenbau , Theodor-Echtermeyer-Weg 1, 14979 Gro\u00dfbeeren , Germany"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1107-5393","authenticated-orcid":false,"given":"Catarina C","family":"Monteiro","sequence":"additional","affiliation":[{"name":"Instituto de Tecnologia Qu\u00edmica e Biol\u00f3gica Ant\u00f3nio Xavier, Universidade Nova de Lisboa , Av. da Rep\u00fablica, 2780-157 Oeiras , Portugal"}]},{"given":"Guilherme","family":"Leit\u00e3o","sequence":"additional","affiliation":[{"name":"Instituto de Tecnologia Qu\u00edmica e Biol\u00f3gica Ant\u00f3nio Xavier, Universidade Nova de Lisboa , Av. da Rep\u00fablica, 2780-157 Oeiras , Portugal"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4822-361X","authenticated-orcid":false,"given":"Philip A","family":"Wigge","sequence":"additional","affiliation":[{"name":"Leibniz-Institut f\u00fcr Gem\u00fcse- und Zierpflanzenbau , Theodor-Echtermeyer-Weg 1, 14979 Gro\u00dfbeeren , Germany"},{"name":"Institute of Biochemistry and Biology, University of Potsdam , 14476 Potsdam , Germany"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6679-3811","authenticated-orcid":false,"given":"Nelson J M","family":"Saibo","sequence":"additional","affiliation":[{"name":"Instituto de Tecnologia Qu\u00edmica e Biol\u00f3gica Ant\u00f3nio Xavier, Universidade Nova de Lisboa , Av. da Rep\u00fablica, 2780-157 Oeiras , Portugal"}]}],"member":"286","published-online":{"date-parts":[[2022,4,16]]},"reference":[{"key":"2022062419020196900_CIT0001","doi-asserted-by":"crossref","first-page":"439","DOI":"10.1016\/j.molcel.2006.06.011","article-title":"Photoactivated phytochrome induces rapid PIF3 phosphorylation prior to proteasome-mediated degradation","volume":"23","author":"Al-Sady","year":"2006","journal-title":"Molecular Cell"},{"key":"2022062419020196900_CIT0002","doi-asserted-by":"crossref","DOI":"10.1073\/pnas.2122582119","article-title":"The Evening Complex integrates photoperiod signals to control flowering in rice","author":"Andrade","year":"2022","journal-title":"Proceedings of the National Academy of Sciences, USA (in press)"},{"key":"2022062419020196900_CIT0003","doi-asserted-by":"crossref","first-page":"347","DOI":"10.1111\/ppl.13092","article-title":"PHYTOCHROME INTERACTING FACTORS at the interface of light and temperature signalling","volume":"169","author":"Balcerowicz","year":"2020","journal-title":"Physiologia Plantarum"},{"key":"2022062419020196900_CIT0004","doi-asserted-by":"crossref","first-page":"158","DOI":"10.1186\/s12870-018-1380-8","article-title":"Phytochrome B1-dependent control of SP5G transcription is the basis of the night break and red to far-red light ratio effects in tomato flowering","volume":"18","author":"Cao","year":"2018","journal-title":"BMC Plant Biology"},{"key":"2022062419020196900_CIT0005","doi-asserted-by":"crossref","first-page":"92","DOI":"10.1186\/s12870-018-1310-9","article-title":"Exposure to lower red to far-red light ratios improve tomato tolerance to salt stress","volume":"18","author":"Cao","year":"2018","journal-title":"BMC Plant Biology"},{"key":"2022062419020196900_CIT0006","doi-asserted-by":"crossref","first-page":"1398","DOI":"10.1104\/pp.110.153593","article-title":"Genome-wide classification and evolutionary analysis of the bHLH family of transcription factors in Arabidopsis, poplar, rice, moss, and algae","volume":"153","author":"Carretero-Paulet","year":"2010","journal-title":"Plant Physiology"},{"key":"2022062419020196900_CIT0007","doi-asserted-by":"crossref","first-page":"2815","DOI":"10.1093\/molbev\/msw155","article-title":"The stepwise increase in the number of transcription factor families in the Precambrian predated the diversification of plants on land","volume":"33","author":"Catarino","year":"2016","journal-title":"Molecular Biology and Evolution"},{"key":"2022062419020196900_CIT0008","doi-asserted-by":"crossref","first-page":"1257","DOI":"10.1016\/j.cell.2016.01.044","article-title":"Information integration and communication in plant growth regulation","volume":"164","author":"Chaiwanon","year":"2016","journal-title":"Cell"},{"key":"2022062419020196900_CIT0009","doi-asserted-by":"crossref","first-page":"9992","DOI":"10.1038\/s41598-019-46437-9","article-title":"Effect of different shading materials on grain yield and quality of rice","volume":"9","author":"Chen","year":"2019","journal-title":"Scientific Reports"},{"key":"2022062419020196900_CIT0010","doi-asserted-by":"crossref","first-page":"308","DOI":"10.1111\/ppl.12087","article-title":"The homeodomain-leucine zipper ATHB23, a phytochrome B-interacting protein, is important for phytochrome B-mediated red light signaling","volume":"150","author":"Choi","year":"2014","journal-title":"Physiologia Plantarum"},{"key":"2022062419020196900_CIT0011","doi-asserted-by":"crossref","first-page":"522","DOI":"10.1038\/s41477-020-0633-3","article-title":"An RNA thermoswitch regulates daytime growth in Arabidopsis","volume":"6","author":"Chung","year":"2020","journal-title":"Nature Plants"},{"key":"2022062419020196900_CIT0012","doi-asserted-by":"crossref","first-page":"393","DOI":"10.1016\/j.bbagrm.2015.12.008","article-title":"Rice PHYTOCHROME-INTERACTING FACTOR protein OsPIF14 represses OsDREB1B gene expression through an extended N-box and interacts preferentially with the active form of phytochrome B","volume":"1859","author":"Cordeiro","year":"2016","journal-title":"Biochimica et Biophysica Acta. Gene Regulatory Mechanisms"},{"key":"2022062419020196900_CIT0013","doi-asserted-by":"crossref","first-page":"441","DOI":"10.1016\/j.isci.2019.11.035","article-title":"Canopy light quality modulates stress responses in plants","volume":"22","author":"Courbier","year":"2019","journal-title":"iScience"},{"key":"2022062419020196900_CIT0014","doi-asserted-by":"crossref","first-page":"3573","DOI":"10.1093\/jxb\/ery145","article-title":"Fruit-localized phytochromes regulate plastid biogenesis, starch synthesis, and carotenoid metabolism in tomato","volume":"69","author":"Ernesto Bianchetti","year":"2018","journal-title":"Journal of Experimental Botany"},{"key":"2022062419020196900_CIT0015","doi-asserted-by":"crossref","first-page":"163","DOI":"10.1007\/s11032-019-1078-0","article-title":"Molecular, cellular and Yin-Yang regulation of grain size and number in rice","volume":"39","author":"Fan","year":"2019","journal-title":"Molecular Breeding"},{"key":"2022062419020196900_CIT0016","doi-asserted-by":"crossref","first-page":"50","DOI":"10.1111\/nph.16316","article-title":"PHYTOCHROME INTERACTING FACTOR 7 is important for early responses to elevated temperature in Arabidopsis seedlings","volume":"226","author":"Fiorucci","year":"2020","journal-title":"New Phytologist"},{"key":"2022062419020196900_CIT0017","doi-asserted-by":"crossref","first-page":"1955","DOI":"10.1111\/pce.12754","article-title":"Photoperiod-dependent changes in the phase of core clock transcripts and global transcriptional outputs at dawn and dusk in Arabidopsis","volume":"39","author":"Flis","year":"2016","journal-title":"Plant, Cell & Environment"},{"key":"2022062419020196900_CIT0018","doi-asserted-by":"crossref","first-page":"20231","DOI":"10.1073\/pnas.1110682108","article-title":"PHYTOCHROME-INTERACTING FACTOR 4 (PIF4) regulates auxin biosynthesis at high temperature","volume":"108","author":"Franklin","year":"2011","journal-title":"Proceedings of the National Academy of Sciences, USA"},{"key":"2022062419020196900_CIT0019","doi-asserted-by":"crossref","first-page":"1078","DOI":"10.1093\/pcp\/pch124","article-title":"Circadian-controlled basic\/helix-loop-helix factor, PIL6, implicated in light-signal transduction in Arabidopsis thaliana","volume":"45","author":"Fujimori","year":"2004","journal-title":"Plant & Cell Physiology"},{"key":"2022062419020196900_CIT0020","doi-asserted-by":"crossref","first-page":"413","DOI":"10.1007\/s11103-015-0288-z","article-title":"A maize PHYTOCHROME-INTERACTING FACTOR 3 improves drought and salt stress tolerance in rice","volume":"87","author":"Gao","year":"2015","journal-title":"Plant Molecular Biology"},{"key":"2022062419020196900_CIT0021","doi-asserted-by":"crossref","first-page":"8","DOI":"10.1007\/s11738-018-2802-9","article-title":"The phytochrome-interacting family of transcription factors in maize (Zea mays L.): identification, evolution, and expression analysis","volume":"41","author":"Gao","year":"2019","journal-title":"Acta Physiologiae Plantarum"},{"key":"2022062419020196900_CIT0022","doi-asserted-by":"crossref","first-page":"1375","DOI":"10.1111\/pbi.12878","article-title":"A maize PHYTOCHROME-INTERACTING FACTOR protein ZmPIF1 enhances drought tolerance by inducing stomatal closure and improves grain yield in Oryza sativa","volume":"16","author":"Gao","year":"2018","journal-title":"Plant Biotechnology Journal"},{"key":"2022062419020196900_CIT0023","doi-asserted-by":"crossref","first-page":"311","DOI":"10.1007\/s11103-018-0739-4","article-title":"Roles of a maize PHYTOCHROME-INTERACTING FACTOR protein ZmPIF3 in regulation of drought stress responses by controlling stomatal closure in transgenic rice without yield penalty","volume":"97","author":"Gao","year":"2018","journal-title":"Plant Molecular Biology"},{"key":"2022062419020196900_CIT0024","doi-asserted-by":"crossref","first-page":"126","DOI":"10.1016\/j.scienta.2017.04.035","article-title":"Phytochromes are key regulators of abiotic stress responses in tomato","volume":"222","author":"Gavassi","year":"2017","journal-title":"Scientia Horticulturae"},{"key":"2022062419020196900_CIT0025","doi-asserted-by":"crossref","first-page":"1328","DOI":"10.1111\/pce.13467","article-title":"PHYTOCHROME-INTERACTING FACTOR 3 mediates light-dependent induction of tocopherol biosynthesis during tomato fruit ripening","volume":"42","author":"Gramegna","year":"2019","journal-title":"Plant, Cell & Environment"},{"key":"2022062419020196900_CIT0026","doi-asserted-by":"crossref","first-page":"696","DOI":"10.1080\/10635150390235520","article-title":"A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood","volume":"52","author":"Guindon","year":"2003","journal-title":"Systematic Biology"},{"key":"2022062419020196900_CIT0027","doi-asserted-by":"crossref","first-page":"53","DOI":"10.1016\/j.biotechadv.2014.12.005","article-title":"Photo-biotechnology as a tool to improve agronomic traits in crops","volume":"33","author":"Gururani","year":"2015","journal-title":"Biotechnology Advances"},{"key":"2022062419020196900_CIT0028","doi-asserted-by":"crossref","first-page":"838","DOI":"10.1104\/pp.19.01169","article-title":"PIF4 plays a conserved role in Solanum lycopersicum","volume":"181","author":"Hayes","year":"2019","journal-title":"Plant Physiology"},{"key":"2022062419020196900_CIT0029","doi-asserted-by":"crossref","first-page":"1963","DOI":"10.3389\/fpls.2016.01963","article-title":"Phytochrome B negatively affects cold tolerance by regulating OsDREB1 gene expression through PHYTOCHROME INTERACTING FACTOR-like protein OsPIL16 in rice","volume":"7","author":"He","year":"2016","journal-title":"Frontiers in Plant Science"},{"key":"2022062419020196900_CIT0030","doi-asserted-by":"crossref","first-page":"65","DOI":"10.5511\/plantbiotechnology.12.0117a","article-title":"Overexpression of a basic helix\u2013loop\u2013helix gene Antagonist of PGL1 (APG) decreases grain length of rice","volume":"29","author":"Heang","year":"2012","journal-title":"Plant Biotechnology"},{"key":"2022062419020196900_CIT0031","doi-asserted-by":"crossref","first-page":"e31325","DOI":"10.1371\/journal.pone.0031325","article-title":"Antagonistic actions of HLH\/bHLH proteins are involved in grain length and weight in rice","volume":"7","author":"Heang","year":"2012","journal-title":"PLoS One"},{"key":"2022062419020196900_CIT0032","doi-asserted-by":"crossref","first-page":"133","DOI":"10.1270\/jsbbs.62.133","article-title":"An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG","volume":"62","author":"Heang","year":"2012","journal-title":"Breeding Science"},{"key":"2022062419020196900_CIT0033","doi-asserted-by":"crossref","first-page":"735","DOI":"10.1093\/molbev\/msg088","article-title":"The basic helix\u2013loop\u2013helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity","volume":"20","author":"Heim","year":"2003","journal-title":"Molecular Biology and Evolution"},{"key":"2022062419020196900_CIT0034","doi-asserted-by":"crossref","first-page":"735","DOI":"10.1111\/j.1469-8137.2007.02044.x","article-title":"A new role for phytochromes in temperature-dependent germination","volume":"174","author":"Heschel","year":"2007","journal-title":"New Phytologist"},{"key":"2022062419020196900_CIT0035","doi-asserted-by":"crossref","first-page":"e00210","DOI":"10.1002\/pld3.210","article-title":"Regulation of monocot and dicot plant development with constitutively active alleles of phytochrome B","volume":"4","author":"Hu","year":"2020","journal-title":"Plant Direct"},{"key":"2022062419020196900_CIT0036","doi-asserted-by":"crossref","first-page":"2441","DOI":"10.1093\/emboj\/21.10.2441","article-title":"PIF4, a phytochrome-interacting bHLH factor, functions as a negative regulator of phytochrome B signaling in Arabidopsis","volume":"21","author":"Huq","year":"2002","journal-title":"EMBO Journal"},{"key":"2022062419020196900_CIT0037","doi-asserted-by":"crossref","first-page":"141","DOI":"10.1093\/pcp\/pci230","article-title":"Functional analysis of rice DREB1\/CBF-type transcription factors involved in cold-responsive gene expression in transgenic rice","volume":"47","author":"Ito","year":"2006","journal-title":"Plant & Cell Physiology"},{"key":"2022062419020196900_CIT0038","doi-asserted-by":"crossref","first-page":"371","DOI":"10.1007\/s10059-013-0135-5","article-title":"Phytochrome-interacting factors have both shared and distinct biological roles","volume":"35","author":"Jeong","year":"2013","journal-title":"Molecules and Cells"},{"key":"2022062419020196900_CIT0039","doi-asserted-by":"crossref","first-page":"1527","DOI":"10.1111\/pbi.13075","article-title":"The basic helix-loop-helix transcription factor, OsPIL15, regulates grain size via directly targeting a purine permease gene OsPUP7 in rice","volume":"17","author":"Ji","year":"2019","journal-title":"Plant Biotechnology Journal"},{"key":"2022062419020196900_CIT0040","doi-asserted-by":"crossref","first-page":"894","DOI":"10.1016\/j.molp.2020.04.006","article-title":"Cold-induced CBF\u2013PIF3 interaction enhances freezing tolerance by stabilizing the phyB thermosensor in Arabidopsis","volume":"13","author":"Jiang","year":"2020","journal-title":"Molecular Plant"},{"key":"2022062419020196900_CIT0041","doi-asserted-by":"crossref","first-page":"E6695","DOI":"10.1073\/pnas.1706226114","article-title":"PIF3 is a negative regulator of the CBF pathway and freezing tolerance in Arabidopsis","volume":"114","author":"Jiang","year":"2017","journal-title":"Proceedings of the National Academy of Sciences, USA"},{"key":"2022062419020196900_CIT0042","doi-asserted-by":"crossref","first-page":"886","DOI":"10.1126\/science.aaf6005","article-title":"Phytochromes function as thermosensors in Arabidopsis","volume":"354","author":"Jung","year":"2016","journal-title":"Science"},{"key":"2022062419020196900_CIT0043","doi-asserted-by":"crossref","first-page":"772","DOI":"10.1093\/molbev\/mst010","article-title":"MAFFT multiple sequence alignment software version 7: Improvements in performance and usability","volume":"30","author":"Katoh","year":"2013","journal-title":"Molecular Biology and Evolution"},{"key":"2022062419020196900_CIT0044","doi-asserted-by":"crossref","first-page":"3033","DOI":"10.1105\/tpc.104.025643","article-title":"A novel molecular recognition motif necessary for targeting photoactivated phytochrome signaling to specific basic helix-loop-helix transcription factors","volume":"16","author":"Khanna","year":"2004","journal-title":"The Plant Cell"},{"key":"2022062419020196900_CIT0045","doi-asserted-by":"crossref","first-page":"3915","DOI":"10.1105\/tpc.107.051508","article-title":"The basic helix-loop-helix transcription factor PIF5 acts on ethylene biosynthesis and phytochrome signaling by distinct mechanisms","volume":"19","author":"Khanna","year":"2007","journal-title":"The Plant Cell"},{"key":"2022062419020196900_CIT0046","doi-asserted-by":"crossref","first-page":"2046","DOI":"10.1104\/pp.109.147033","article-title":"The PHYTOCHROME-INTERACTING FACTOR PIF7 negatively regulates DREB1 expression under circadian control in Arabidopsis","volume":"151","author":"Kidokoro","year":"2009","journal-title":"Plant Physiology"},{"key":"2022062419020196900_CIT0047","doi-asserted-by":"crossref","first-page":"2399","DOI":"10.1105\/tpc.014498","article-title":"Functional characterization of PHYTOCHROME INTERACTING FACTOR 3 in phytochrome-mediated light signal transduction","volume":"15","author":"Kim","year":"2003","journal-title":"The Plant Cell"},{"key":"2022062419020196900_CIT0048","doi-asserted-by":"crossref","first-page":"408","DOI":"10.1016\/j.cub.2009.01.046","article-title":"High temperature-mediated adaptations in plant architecture require the bHLH transcription factor PIF4","volume":"19","author":"Koini","year":"2009","journal-title":"Current Biology"},{"key":"2022062419020196900_CIT0049","doi-asserted-by":"crossref","first-page":"458","DOI":"10.1111\/pbi.12644","article-title":"Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants","volume":"15","author":"Kudo","year":"2017","journal-title":"Plant Biotechnology Journal"},{"key":"2022062419020196900_CIT0050","doi-asserted-by":"crossref","first-page":"1547","DOI":"10.1093\/molbev\/msy096","article-title":"MEGA X: Molecular evolutionary genetics analysis across computing platforms","volume":"35","author":"Kumar","year":"2018","journal-title":"Molecular Biology and Evolution"},{"key":"2022062419020196900_CIT0051","doi-asserted-by":"crossref","first-page":"15054","DOI":"10.1073\/pnas.1211295109","article-title":"Photoperiodic regulation of the C-repeat binding factor (CBF) cold acclimation pathway and freezing tolerance in Arabidopsis thaliana","volume":"109","author":"Lee","year":"2012","journal-title":"Proceedings of the National Academy of Sciences, USA"},{"key":"2022062419020196900_CIT0052","doi-asserted-by":"crossref","first-page":"54","DOI":"10.1016\/j.pbi.2016.11.004","article-title":"Phytochrome-interacting factor from Arabidopsis to liverwort","volume":"35","author":"Lee","year":"2017","journal-title":"Current Opinion in Plant Biology"},{"key":"2022062419020196900_CIT0053","doi-asserted-by":"crossref","first-page":"5219","DOI":"10.1038\/s41467-019-13045-0","article-title":"Molecular mechanisms underlying phytochrome-controlled morphogenesis in plants","volume":"10","author":"Legris","year":"2019","journal-title":"Nature Communications"},{"key":"2022062419020196900_CIT0054","doi-asserted-by":"crossref","first-page":"897","DOI":"10.1126\/science.aaf5656","article-title":"Phytochrome B integrates light and temperature signals in Arabidopsis","volume":"354","author":"Legris","year":"2016","journal-title":"Science"},{"key":"2022062419020196900_CIT0055","doi-asserted-by":"crossref","first-page":"56","DOI":"10.1105\/tpc.113.120857","article-title":"PIFs: Systems integrators in plant development","volume":"26","author":"Leivar","year":"2014","journal-title":"The Plant Cell"},{"key":"2022062419020196900_CIT0056","doi-asserted-by":"crossref","first-page":"337","DOI":"10.1105\/tpc.107.052142","article-title":"The Arabidopsis phytochrome-interacting factor PIF7, together with PIF3 and PIF4, regulates responses to prolonged red light by modulating phyB levels","volume":"20","author":"Leivar","year":"2008","journal-title":"The Plant Cell"},{"key":"2022062419020196900_CIT0057","doi-asserted-by":"crossref","first-page":"19","DOI":"10.1016\/j.tplants.2010.08.003","article-title":"PIFs: pivotal components in a cellular signaling hub","volume":"16","author":"Leivar","year":"2011","journal-title":"Trends in Plant Science"},{"key":"2022062419020196900_CIT0058","doi-asserted-by":"crossref","first-page":"11868","DOI":"10.1038\/ncomms11868","article-title":"DELLA-mediated PIF degradation contributes to coordination of light and gibberellin signalling in Arabidopsis","volume":"7","author":"Li","year":"2016","journal-title":"Nature Communications"},{"key":"2022062419020196900_CIT0059","doi-asserted-by":"crossref","first-page":"101","DOI":"10.1111\/tpj.12276","article-title":"Direct regulation of abiotic responses by the Arabidopsis circadian clock component PRR7","volume":"76","author":"Liu","year":"2013","journal-title":"The Plant Journal"},{"key":"2022062419020196900_CIT0060","doi-asserted-by":"crossref","first-page":"107","DOI":"10.1111\/tpj.13094","article-title":"Tomato fruit carotenoid biosynthesis is adjusted to actual ripening progression by a light-dependent mechanism","volume":"85","author":"Llorente","year":"2016","journal-title":"The Plant Journal"},{"key":"2022062419020196900_CIT0061","doi-asserted-by":"crossref","first-page":"2441","DOI":"10.1105\/tpc.113.121657","article-title":"COP1 and phyB physically interact with PIL1 to regulate its stability and photomorphogenic development in Arabidopsis","volume":"26","author":"Luo","year":"2014","journal-title":"The Plant Cell"},{"key":"2022062419020196900_CIT0062","doi-asserted-by":"crossref","first-page":"224","DOI":"10.1073\/pnas.1511437113","article-title":"Cryptochrome 1 interacts with PIF4 to regulate high temperature-mediated hypocotyl elongation in response to blue light","volume":"113","author":"Ma","year":"2016","journal-title":"Proceedings of the National Academy of Sciences, USA"},{"key":"2022062419020196900_CIT0063","doi-asserted-by":"crossref","first-page":"859","DOI":"10.1126\/science.288.5467.859","article-title":"Direct targeting of light signals to a promoter element-bound transcription factor","volume":"288","author":"Mart\u00ednez-Garc\u00eda","year":"2000","journal-title":"Science"},{"key":"2022062419020196900_CIT0064","doi-asserted-by":"crossref","first-page":"e1414","DOI":"10.1371\/journal.pgen.0040014","article-title":"Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules","volume":"4","author":"Michael","year":"2008","journal-title":"PLoS Genetics"},{"key":"2022062419020196900_CIT0065","doi-asserted-by":"crossref","first-page":"1163","DOI":"10.1126\/science.7855596","article-title":"The regulation of circadian period by phototransduction pathways in Arabidopsis","volume":"267","author":"Millar","year":"1995","journal-title":"Science"},{"key":"2022062419020196900_CIT0066","doi-asserted-by":"crossref","first-page":"506","DOI":"10.1104\/pp.20.00024","article-title":"PHYTOCHROME-INTERACTING FACTOR-LIKE14 and SLENDER RICE1 interaction controls seedling growth under salt stress","volume":"184","author":"Mo","year":"2020","journal-title":"Plant Physiology"},{"key":"2022062419020196900_CIT0067","doi-asserted-by":"crossref","first-page":"1457","DOI":"10.1104\/pp.18.01418","article-title":"Response of the circadian clock and diel starch turnover to one day of low light or low CO2","volume":"179","author":"Moraes","year":"2019","journal-title":"Plant Physiology"},{"key":"2022062419020196900_CIT0068","doi-asserted-by":"crossref","first-page":"17123","DOI":"10.1073\/pnas.1205156109","article-title":"Transcriptional repressor PRR5 directly regulates clock-output pathways","volume":"109","author":"Nakamichi","year":"2012","journal-title":"Proceedings of the National Academy of Sciences, USA"},{"key":"2022062419020196900_CIT0069","doi-asserted-by":"crossref","first-page":"1183","DOI":"10.1271\/bbb.60643","article-title":"Characterization of a set of PHYTOCHROME-INTERACTING FACTOR-like bHLH proteins in Oryza sativa","volume":"71","author":"Nakamura","year":"2007","journal-title":"Bioscience, Biotechnology, and Biochemistry"},{"key":"2022062419020196900_CIT0070","doi-asserted-by":"crossref","first-page":"657","DOI":"10.1016\/S0092-8674(00)81636-0","article-title":"PIF3, a PHYTOCHROME-INTERACTING FACTOR necessary for normal photoinduced signal transduction, is a novel basic helix-loop-helix protein","volume":"95","author":"Ni","year":"1998","journal-title":"Cell"},{"key":"2022062419020196900_CIT0071","doi-asserted-by":"crossref","first-page":"398","DOI":"10.1038\/nature10182","article-title":"The ELF4\u2013ELF3\u2013LUX complex links the circadian clock to diurnal control of hypocotyl growth","volume":"475","author":"Nusinow","year":"2011","journal-title":"Nature"},{"key":"2022062419020196900_CIT0072","doi-asserted-by":"crossref","first-page":"3045","DOI":"10.1105\/tpc.104.025163","article-title":"PIL5, a phytochrome-interacting basic helix-loop-helix protein, is a key negative regulator of seed germination in Arabidopsis thaliana","volume":"16","author":"Oh","year":"2004","journal-title":"The Plant Cell"},{"key":"2022062419020196900_CIT0073","doi-asserted-by":"crossref","first-page":"124","DOI":"10.1111\/j.1365-313X.2006.02773.x","article-title":"Light activates the degradation of PIL5 protein to promote seed germination through gibberellin in Arabidopsis","volume":"47","author":"Oh","year":"2006","journal-title":"The Plant Journal"},{"key":"2022062419020196900_CIT0074","doi-asserted-by":"crossref","first-page":"186","DOI":"10.1105\/tpc.19.00515","article-title":"PHYTOCHROME INTERACTING FACTOR8 inhibits phytochrome A-mediated far-red light responses in Arabidopsis","volume":"32","author":"Oh","year":"2020","journal-title":"The Plant Cell"},{"key":"2022062419020196900_CIT0075","doi-asserted-by":"crossref","first-page":"1035","DOI":"10.1016\/j.molp.2017.07.002","article-title":"Expanding roles of PIFs in signal integration from multiple processes","volume":"10","author":"Paik","year":"2017","journal-title":"Molecular Plant"},{"key":"2022062419020196900_CIT0076","doi-asserted-by":"crossref","first-page":"968","DOI":"10.1093\/pcp\/pch125","article-title":"Degradation of PHYTOCHROME INTERACTING FACTOR 3 in phytochrome-mediated light signaling","volume":"45","author":"Park","year":"2004","journal-title":"Plant and Cell Physiology"},{"key":"2022062419020196900_CIT0077","doi-asserted-by":"crossref","first-page":"1277","DOI":"10.1105\/tpc.17.00913","article-title":"Phytochrome B requires PIF degradation and sequestration to induce light responses across a wide range of light conditions","volume":"30","author":"Park","year":"2018","journal-title":"Plant Cell"},{"key":"2022062419020196900_CIT0078","doi-asserted-by":"crossref","first-page":"89","DOI":"10.1007\/s11103-009-9571-1","article-title":"A role for an alternative splice variant of PIF6 in the control of Arabidopsis primary seed dormancy","volume":"73","author":"Penfield","year":"2010","journal-title":"Plant Molecular Biology"},{"key":"2022062419020196900_CIT0079","doi-asserted-by":"crossref","first-page":"862","DOI":"10.1093\/molbev\/msp288","article-title":"Origin and diversification of basic-helix-loop-helix proteins in plants","volume":"27","author":"Pires","year":"2010","journal-title":"Molecular Biology and Evolution"},{"key":"2022062419020196900_CIT0080","doi-asserted-by":"crossref","first-page":"140","DOI":"10.1038\/s41467-018-08059-z","article-title":"Daytime temperature is sensed by phytochrome B in Arabidopsis through a transcriptional activator HEMERA","volume":"10","author":"Qiu","year":"2019","journal-title":"Nature Communications"},{"key":"2022062419020196900_CIT0081","doi-asserted-by":"crossref","first-page":"e01659291","DOI":"10.1371\/journal.pone.0165929","article-title":"Phytochrome Interacting Factors (PIFs) in Solanum lycopersicum: Diversity, evolutionary history and expression profiling during different developmental processes","volume":"11","author":"Rosado","year":"2016","journal-title":"PLoS One"},{"key":"2022062419020196900_CIT0082","doi-asserted-by":"crossref","first-page":"1360","DOI":"10.1104\/pp.19.00833","article-title":"Downregulation of PHYTOCHROME-INTERACTING FACTOR 4 influences plant development and fruit production","volume":"181","author":"Rosado","year":"2019","journal-title":"Plant Physiology"},{"key":"2022062419020196900_CIT0083","first-page":"279","article-title":"Rice PHYTOCHROME-INTERACTING FACTOR-Like1 (OsPIL1) is involved in the promotion of chlorophyll biosynthesis through feed-forward regulatory loops","volume":"237","author":"Sakuraba","year":"2017","journal-title":"Journal of Experimental Botany"},{"key":"2022062419020196900_CIT0084","doi-asserted-by":"crossref","first-page":"363","DOI":"10.1016\/j.molp.2020.02.006","article-title":"Light perception: a matter of time","volume":"13","author":"Sanchez","year":"2020","journal-title":"Molecular Plant"},{"key":"2022062419020196900_CIT0085","doi-asserted-by":"crossref","first-page":"1043","DOI":"10.1104\/pp.107.105601","article-title":"Phytochrome induces rapid PIF5 phosphorylation and degradation in response to red-light activation","volume":"145","author":"Shen","year":"2007","journal-title":"Plant Physiology"},{"key":"2022062419020196900_CIT0086","doi-asserted-by":"crossref","first-page":"217","DOI":"10.1111\/nph.14579","article-title":"PHYTOCHROME INTERACTING FACTORS mediate metabolic control of the circadian system in Arabidopsis","volume":"215","author":"Shor","year":"2017","journal-title":"New Phytologist"},{"key":"2022062419020196900_CIT0087","doi-asserted-by":"crossref","first-page":"1488","DOI":"10.1126\/science.282.5393.1488","article-title":"Phytochromes and cryptochromes in the entrainment of the Arabidopsis circadian clock","volume":"282","author":"Somers","year":"1998","journal-title":"Science"},{"key":"2022062419020196900_CIT0088","doi-asserted-by":"crossref","first-page":"1194","DOI":"10.3390\/ijms18061194","article-title":"Photoreceptor phyB involved in Arabidopsis temperature perception and heat-tolerance formation","volume":"18","author":"Song","year":"2017","journal-title":"International Journal of Molecular Sciences"},{"key":"2022062419020196900_CIT0089","doi-asserted-by":"crossref","first-page":"4870","DOI":"10.1073\/pnas.1603745113","article-title":"Molecular convergence of clock and photosensory pathways through PIF3-TOC1 interaction and co-occupancy of target promoters","volume":"113","author":"Soy","year":"2016","journal-title":"Proceedings of the National Academy of Sciences, USA"},{"key":"2022062419020196900_CIT0090","doi-asserted-by":"crossref","first-page":"589","DOI":"10.1111\/j.1365-313X.2009.03983.x","article-title":"Hormonal regulation of temperature-induced growth in Arabidopsis","volume":"60","author":"Stavang","year":"2009","journal-title":"The Plant Journal"},{"key":"2022062419020196900_CIT0091","doi-asserted-by":"crossref","first-page":"e1002594","DOI":"10.1371\/journal.pgen.1002594","article-title":"PIF4-mediated activation of YUCCA8 expression integrates temperature into the auxin pathway in regulating Arabidopsis hypocotyl growth","volume":"8","author":"Sun","year":"2012","journal-title":"PLoS Genetics"},{"key":"2022062419020196900_CIT0092","doi-asserted-by":"crossref","first-page":"823","DOI":"10.1111\/nph.16399","article-title":"OsmiR530 acts downstream of OsPIL15 to regulate grain yield in rice","volume":"226","author":"Sun","year":"2020","journal-title":"New Phytologist"},{"key":"2022062419020196900_CIT0093","doi-asserted-by":"crossref","first-page":"1141","DOI":"10.1093\/jxb\/ert487","article-title":"The time of day effects of warm temperature on flowering time involve PIF4 and PIF5","volume":"65","author":"Thines","year":"2014","journal-title":"Journal of Experimental Botany"},{"key":"2022062419020196900_CIT0094","doi-asserted-by":"crossref","first-page":"15947","DOI":"10.1073\/pnas.1207324109","article-title":"Rice PHYTOCHROME-INTERACTING FACTOR-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress","volume":"109","author":"Todaka","year":"2012","journal-title":"Proceedings of the National Academy of Sciences, USA"},{"key":"2022062419020196900_CIT0095","doi-asserted-by":"crossref","first-page":"1698","DOI":"10.1104\/pp.114.242438","article-title":"Phytochrome B nuclear bodies respond to the low red to far-red ratio and to the reduced irradiance of canopy shade in Arabidopsis","volume":"165","author":"Trupkin","year":"2014","journal-title":"Plant Physiology"},{"key":"2022062419020196900_CIT0096","doi-asserted-by":"crossref","first-page":"1591","DOI":"10.1093\/pcp\/pci175","article-title":"Functional characterization of PHYTOCHROME INTERACTING FACTOR 3 for the Arabidopsis thaliana circadian clockwork","volume":"46","author":"Viczi\u00e1n","year":"2005","journal-title":"Plant and Cell Physiology"},{"key":"2022062419020196900_CIT0097","doi-asserted-by":"crossref","first-page":"1041","DOI":"10.1111\/pbi.13272","article-title":"Crosstalk of PIF4 and DELLA modulates CBF transcript and hormone homeostasis in cold response in tomato","volume":"18","author":"Wang","year":"2020","journal-title":"Plant Biotechnology Journal"},{"key":"2022062419020196900_CIT0098","doi-asserted-by":"crossref","first-page":"459","DOI":"10.1104\/pp.15.01171","article-title":"Phytochrome A and B function antagonistically to regulate cold tolerance via abscisic acid-dependent jasmonate signaling","volume":"170","author":"Wang","year":"2016","journal-title":"Plant Physiology"},{"key":"2022062419020196900_CIT0099","doi-asserted-by":"crossref","first-page":"39","DOI":"10.1186\/s12864-015-1249-2","article-title":"Genome-wide analysis of bHLH transcription factor and involvement in the infection by yellow leaf curl virus in tomato (Solanum lycopersicum)","volume":"16","author":"Wang","year":"2015","journal-title":"BMC Genomics"},{"key":"2022062419020196900_CIT0100","doi-asserted-by":"crossref","first-page":"77","DOI":"10.1038\/s41438-019-0159-x","article-title":"CRISPR technology is revolutionizing the improvement of tomato and other fruit crops","volume":"6","author":"Wang","year":"2019","journal-title":"Horticulture Research"},{"key":"2022062419020196900_CIT0101","doi-asserted-by":"crossref","first-page":"309","DOI":"10.1186\/s12870-018-1529-5","article-title":"Comparative functional genomics analysis of bHLH gene family in rice, maize and wheat","volume":"18","author":"Wei","year":"2018","journal-title":"BMC Plant Biology"},{"key":"2022062419020196900_CIT0102","doi-asserted-by":"crossref","first-page":"107765","DOI":"10.1016\/j.fcr.2020.107765","article-title":"Effects of phytochromes B on growth variability and competitive capacity of maize plants in a canopy","volume":"250","author":"Wies","year":"2020","journal-title":"Field Crops Research"},{"key":"2022062419020196900_CIT0103","doi-asserted-by":"crossref","first-page":"1079","DOI":"10.1093\/aob\/mcz015","article-title":"Phytochrome B enhances plant growth, biomass and grain yield in field-grown maize","volume":"123","author":"Wies","year":"2019","journal-title":"Annals of Botany"},{"key":"2022062419020196900_CIT0104","doi-asserted-by":"crossref","first-page":"661","DOI":"10.1016\/j.pbi.2013.08.004","article-title":"Ambient temperature signalling in plants","volume":"16","author":"Wigge","year":"2013","journal-title":"Current Opinion in Plant Biology"},{"key":"2022062419020196900_CIT0105","doi-asserted-by":"crossref","first-page":"789","DOI":"10.1104\/pp.19.00239","article-title":"Characterization of maize phytochrome-interacting factors in light signaling and photomorphogenesis","volume":"181","author":"Wu","year":"2019","journal-title":"Plant Physiology"},{"key":"2022062419020196900_CIT0106","doi-asserted-by":"crossref","first-page":"105","DOI":"10.1007\/s00425-019-03149-8","article-title":"PHYTOCHROME-INTERACTING FACTOR-like protein OsPIL15 integrates light and gravitropism to regulate tiller angle in rice","volume":"250","author":"Xie","year":"2019","journal-title":"Planta"},{"key":"2022062419020196900_CIT0107","doi-asserted-by":"crossref","first-page":"131","DOI":"10.1562\/2006-03-17-RA-850","article-title":"Phytochrome-mediated inhibition of coleoptile growth in rice: age-dependency and action spectra","volume":"83","author":"Xie","year":"2007","journal-title":"Photochemistry and Photobiology"},{"key":"2022062419020196900_CIT0108","doi-asserted-by":"crossref","first-page":"952","DOI":"10.1016\/j.tplants.2020.06.010","article-title":"CBF-phyB-PIF module links light and low temperature signaling","volume":"25","author":"Xu","year":"2020","journal-title":"Trends in Plant Science"},{"key":"2022062419020196900_CIT0109","doi-asserted-by":"crossref","first-page":"619","DOI":"10.1093\/pcp\/pcg078","article-title":"A link between circadian-controlled bHLH factors and the APRR1\/TOC1 quintet in Arabidopsis thaliana","volume":"44","author":"Yamashino","year":"2003","journal-title":"Plant and Cell Physiology"},{"key":"2022062419020196900_CIT0110","doi-asserted-by":"crossref","first-page":"41","DOI":"10.1186\/s12284-018-0237-y","article-title":"Overexpression of OsbHLH107, a member of the basic helix-loop-helix transcription factor family, enhances grain size in rice (Oryza sativa L.)","volume":"11","author":"Yang","year":"2018","journal-title":"Rice"},{"key":"2022062419020196900_CIT0111","doi-asserted-by":"crossref","first-page":"3635","DOI":"10.1038\/s41598-019-40081-z","article-title":"Improving maize grain yield by matching maize growth and solar radiation","volume":"9","author":"Yang","year":"2019","journal-title":"Scientific Reports"},{"key":"2022062419020196900_CIT0112","doi-asserted-by":"crossref","first-page":"235","DOI":"10.1186\/s12870-018-1441-z","article-title":"Genome-wide analysis of the basic Helix-Loop-Helix (bHLH) transcription factor family in maize","volume":"18","author":"Zhang","year":"2018","journal-title":"BMC Plant Biology"},{"key":"2022062419020196900_CIT0113","doi-asserted-by":"crossref","first-page":"788","DOI":"10.1016\/j.nbt.2011.04.006","article-title":"An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15","volume":"28","author":"Zhao","year":"2011","journal-title":"New Biotechnology"},{"key":"2022062419020196900_CIT0114","doi-asserted-by":"crossref","first-page":"373","DOI":"10.1111\/jipb.12137","article-title":"Overexpression of OsPIL15, a PHYTOCHROME-INTERACTING FACTOR-like protein gene, represses etiolated seedling growth in rice","volume":"56","author":"Zhou","year":"2014","journal-title":"Journal of Integrative Plant Biology"},{"key":"2022062419020196900_CIT0115","doi-asserted-by":"crossref","first-page":"13692","DOI":"10.1038\/ncomms13692","article-title":"TOC1\u2013PIF4 interaction mediates the circadian gating of thermoresponsive growth in Arabidopsis","volume":"7","author":"Zhu","year":"2016","journal-title":"Nature Communications"}],"container-title":["Journal of Experimental Botany"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/jxb\/advance-article-pdf\/doi\/10.1093\/jxb\/erac142\/44045103\/erac142.pdf","content-type":"application\/pdf","content-version":"am","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/jxb\/article-pdf\/73\/12\/3881\/44248837\/erac142.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/jxb\/article-pdf\/73\/12\/3881\/44248837\/erac142.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,11,20]],"date-time":"2023-11-20T00:29:38Z","timestamp":1700440178000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/jxb\/article\/73\/12\/3881\/6569348"}},"subtitle":[],"editor":[{"given":"John","family":"Lunn","sequence":"additional","affiliation":[{"name":"MPI of Molecular Plant Physiology , Germany"}]}],"short-title":[],"issued":{"date-parts":[[2022,4,16]]},"references-count":115,"journal-issue":{"issue":"12","published-online":{"date-parts":[[2022,4,16]]},"published-print":{"date-parts":[[2022,6,24]]}},"URL":"https:\/\/doi.org\/10.1093\/jxb\/erac142","relation":{},"ISSN":["0022-0957","1460-2431"],"issn-type":[{"value":"0022-0957","type":"print"},{"value":"1460-2431","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2022,6,24]]},"published":{"date-parts":[[2022,4,16]]}}}