{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,9]],"date-time":"2026-03-09T04:50:32Z","timestamp":1773031832125,"version":"3.50.1"},"reference-count":104,"publisher":"Oxford University Press (OUP)","issue":"1","license":[{"start":{"date-parts":[[2021,10,28]],"date-time":"2021-10-28T00:00:00Z","timestamp":1635379200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2022,1,7]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>The Mediterranean Basin has experienced extensive change in geology and climate over the past six million years. Yet, the relative importance of key geological events for the distribution and genetic structure of the Mediterranean fauna remains poorly understood. Here, we use population genomic and phylogenomic analyses to establish the evolutionary history and genetic structure of common wall lizards (Podarcis muralis). This species is particularly informative because, in contrast to other Mediterranean lizards, it is widespread across the Iberian, Italian, and Balkan Peninsulas, and in extra-Mediterranean regions. We found strong support for six major lineages within P.\u00a0muralis, which were largely discordant with the phylogenetic relationship of mitochondrial DNA. The most recent common ancestor of extant P.\u00a0muralis was likely distributed in the Italian Peninsula, and experienced an \u201cOut-of-Italy\u201d expansion following the Messinian salinity crisis (\u223c5 Mya), resulting in the differentiation into the extant lineages on the Iberian, Italian, and Balkan Peninsulas. Introgression analysis revealed that both inter- and intraspecific gene flows have been pervasive throughout the evolutionary history of P.\u00a0muralis. For example, the Southern Italy lineage has a hybrid origin, formed through admixture between the Central Italy lineage and an ancient lineage that was the sister to all other P.\u00a0muralis. More recent genetic differentiation is associated with the onset of the Quaternary glaciations, which influenced population dynamics and genetic diversity of contemporary lineages. These results demonstrate the pervasive role of Mediterranean geology and climate for the evolutionary history and population genetic structure of extant species.<\/jats:p>","DOI":"10.1093\/molbev\/msab311","type":"journal-article","created":{"date-parts":[[2021,10,26]],"date-time":"2021-10-26T15:11:07Z","timestamp":1635261067000},"source":"Crossref","is-referenced-by-count":26,"title":["Population Genomics of Wall Lizards Reflects the Dynamic History of the Mediterranean Basin"],"prefix":"10.1093","volume":"39","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-5466-2729","authenticated-orcid":false,"given":"Weizhao","family":"Yang","sequence":"first","affiliation":[{"name":"Department of Biology, Lund University, Lund, Sweden"}]},{"given":"Nathalie","family":"Feiner","sequence":"additional","affiliation":[{"name":"Department of Biology, Lund University, Lund, Sweden"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-3804-2690","authenticated-orcid":false,"given":"Daniele","family":"Salvi","sequence":"additional","affiliation":[{"name":"Department of Health, Life and Environmental Sciences, University of L\u2019Aquila, Coppito, L\u2019Aquila, Italy"}]},{"given":"Hanna","family":"Laakkonen","sequence":"additional","affiliation":[{"name":"Department of Biology, Lund University, Lund, Sweden"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5394-0114","authenticated-orcid":false,"given":"Daniel","family":"Jablonski","sequence":"additional","affiliation":[{"name":"Department of Zoology, Comenius University, Bratislava, Slovakia"}]},{"given":"Catarina","family":"Pinho","sequence":"additional","affiliation":[{"name":"CIBIO\/InBIO Research Centre in Biodiversity and Genetic Resources, Universidade do Porto, Vair\u00e3o, Portugal"}]},{"given":"Miguel A","family":"Carretero","sequence":"additional","affiliation":[{"name":"CIBIO\/InBIO Research Centre in Biodiversity and Genetic Resources, Universidade do Porto, Vair\u00e3o, Portugal"},{"name":"Departamento de Biologia, Faculdade de Ci\u00eancias da Universidade do Porto, Porto, Portugal"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6199-0074","authenticated-orcid":false,"given":"Roberto","family":"Sacchi","sequence":"additional","affiliation":[{"name":"Department of Earth and Environmental Sciences, University of Pavia, Pavia, Italy"}]},{"given":"Marco A L","family":"Zuffi","sequence":"additional","affiliation":[{"name":"Museum Natural History, University of Pisa, Pisa, Italy"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4318-751X","authenticated-orcid":false,"given":"Stefano","family":"Scali","sequence":"additional","affiliation":[{"name":"Museum of Natural History of Milan, Milano, Italy"}]},{"given":"Konstantinos","family":"Plavos","sequence":"additional","affiliation":[{"name":"Department of Biology, Lund University, Lund, Sweden"}]},{"given":"Panayiotis","family":"Pafilis","sequence":"additional","affiliation":[{"name":"National & Kapodistrian University of Athens, School of Science, Faculty of Biology, Athens, Greece"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9982-7416","authenticated-orcid":false,"given":"Nikos","family":"Poulakakis","sequence":"additional","affiliation":[{"name":"Natural History Museum of Crete, School of Sciences and Engineering, University of Crete, Heraklion, Greece"},{"name":"Biology Department, School of Sciences and Engineering, University of Crete, Voutes University Campus, Heraklion, Greece"},{"name":"Foundation for Research and Technology\u2014Hellas (FORTH), Institute of Molecular Biology and Biotechnology (IMBB), Heraklion, Greece"}]},{"given":"Petros","family":"Lymberakis","sequence":"additional","affiliation":[{"name":"Natural History Museum of Crete, School of Sciences and Engineering, University of Crete, Heraklion, Greece"}]},{"given":"David","family":"Jandzik","sequence":"additional","affiliation":[{"name":"Department of Zoology, Comenius University, Bratislava, Slovakia"}]},{"given":"Ulrich","family":"Schulte","sequence":"additional","affiliation":[{"name":"B\u00fcro f\u00fcr Faunistische Gutachten\u2014Dr. Ulrich Schulte, Kaiserstra\u00dfe 2, Borgholzhausen, Germany"}]},{"given":"Fabien","family":"Aubret","sequence":"additional","affiliation":[{"name":"Station d\u2019Ecologie Th\u00e9orique et Exp\u00e9rimentale, CNRS, Moulis, France"},{"name":"School of Molecular and Life Sciences, Curtin University, Perth, Australia"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5556-6613","authenticated-orcid":false,"given":"Arnaud","family":"Badiane","sequence":"additional","affiliation":[{"name":"IMBE, Aix-Marseille Universit\u00e9, Avignon Universit\u00e9, CNRS, IRD, Marseille, France"}]},{"given":"Guillem","family":"Perez\u00a0i de Lanuza","sequence":"additional","affiliation":[{"name":"Institut Cavanilles de Biodiversitat i Biologia Evolutiva, Universitat de Val\u00e8ncia, Valencia, Spain"}]},{"given":"Javier","family":"Abalos","sequence":"additional","affiliation":[{"name":"Institut Cavanilles de Biodiversitat i Biologia Evolutiva, Universitat de Val\u00e8ncia, Valencia, Spain"}]},{"given":"Geoffrey M","family":"While","sequence":"additional","affiliation":[{"name":"School of Natural Sciences, University of Tasmania, Sandy Bay, Tasmania, Australia"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1293-5842","authenticated-orcid":false,"given":"Tobias","family":"Uller","sequence":"additional","affiliation":[{"name":"Department of Biology, Lund University, Lund, Sweden"}]}],"member":"286","published-online":{"date-parts":[[2021,10,28]]},"reference":[{"issue":"9","key":"2022011517373672300_msab311-B1","doi-asserted-by":"crossref","first-page":"1655","DOI":"10.1101\/gr.094052.109","article-title":"Fast model-based estimation of ancestry in unrelated 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