{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,9]],"date-time":"2026-04-09T07:51:31Z","timestamp":1775721091278,"version":"3.50.1"},"reference-count":165,"publisher":"Oxford University Press (OUP)","issue":"7","license":[{"start":{"date-parts":[[2025,6,6]],"date-time":"2025-06-06T00:00:00Z","timestamp":1749168000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2025,7,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Geodia hentscheli, a species forming sponge grounds in the North Atlantic and Arctic Oceans, is a common deep-sea organism, that plays a fundamental role in forming biogenic habitats. However, there is little information about gene flow and adaptation patterns of this species, which is crucial to develop effective management\/conservation plans under current global change scenarios. Here, we generated ddRADseq data from 110 specimens of G. hentscheli, together with microbial profiling, transcriptomics, and metatranscriptomics for a selection of specimens to investigate their genetic diversity, molecular connectivity, and local adaptations. Sampling covered the species' entire distribution within a wide bathymetric range. We obtained 1,115 neutral SNPs and identified long-distance genetic connectivity among regions separated 1,000s of km, but strong genetic structure segregating populations by depth at ca. 1,300\u2005m, in line with our microbial analyses. Coalescent analyses inferred the split of these depth-related genetic entities \u223c10\u2005KYA, coincident with the last postglacial maximum. Analyses of SNPs under selection, combined with transcriptomic and metatranscriptomic data highlight the presence of several sponge genes and microbial metabolic pathways involved in adaptation to depth, including heat shock proteins and fatty acids, among others. The physiological plasticity of the sponge and its microbiome as a function of depth suggest the existence of a host-microbiome metabolic compensation for G. hentscheli. This study provides a multiscale paradigmatic example of the depth-differentiation hypothesis, a phenomenon mainly caused by changes in environmental conditions at different depths, mainly related to the presence of water masses with different characteristics that drive local adaptations.<\/jats:p>","DOI":"10.1093\/molbev\/msaf145","type":"journal-article","created":{"date-parts":[[2025,6,6]],"date-time":"2025-06-06T09:09:00Z","timestamp":1749200940000},"source":"Crossref","is-referenced-by-count":3,"title":["Connectivity and Adaptation Patterns of the Deep-Sea Ground-Forming Sponge <i>Geodia hentscheli<\/i> Across Its Entire Distribution"],"prefix":"10.1093","volume":"42","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-1669-1152","authenticated-orcid":false,"given":"Sergi","family":"Taboada","sequence":"first","affiliation":[{"name":"Departamento de Biodiversidad y Biolog\u00eda Evolutiva, Museo Nacional de Ciencias Naturales (MNCN), CSIC , Madrid 28006 ,","place":["Spain"]},{"name":"Department of Life Sciences, Natural History Museum , London SW7 5BD ,","place":["UK"]},{"name":"Departamento de Ciencias de la Vida, EU-US Marine Biodiversity Group, Universidad de Alcal\u00e1 , Alcal\u00e1 de Henares 28871 ,","place":["Spain"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1772-7092","authenticated-orcid":false,"given":"Cristina","family":"D\u00edez-Vives","sequence":"additional","affiliation":[{"name":"Departamento de Biodiversidad y Biolog\u00eda Evolutiva, Museo Nacional de Ciencias Naturales (MNCN), CSIC , Madrid 28006 ,","place":["Spain"]},{"name":"Department of Systems Biology, Centro Nacional de Biotecnolog\u00eda , Madrid 28049 ,","place":["Spain"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-3806-4937","authenticated-orcid":false,"given":"Marta","family":"Turon","sequence":"additional","affiliation":[{"name":"Departamento de Biodiversidad y Biolog\u00eda Evolutiva, Museo Nacional de Ciencias Naturales (MNCN), CSIC , Madrid 28006 ,","place":["Spain"]},{"name":"Departamento de Ecolog\u00eda Marina, Centre d\u2019Estudis Avan\u00e7ats de Blanes (CEAB-CSIC) , 17300, Blanes ,","place":["Spain"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5538-5177","authenticated-orcid":false,"given":"Mar\u00eda","family":"Bel\u00e9n Arias","sequence":"additional","affiliation":[{"name":"Department of Life Sciences, Natural History Museum , London SW7 5BD ,","place":["UK"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0945-0249","authenticated-orcid":false,"given":"Carles","family":"Gali\u00e0-Camps","sequence":"additional","affiliation":[{"name":"Departamento de Biodiversidad y Biolog\u00eda Evolutiva, Museo Nacional de Ciencias Naturales (MNCN), CSIC , Madrid 28006 ,","place":["Spain"]},{"name":"Sociedad de Amigos del Museo Nacional de Ciencias Naturales (MNCN) , Madrid 28006 ,","place":["Spain"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4045-6718","authenticated-orcid":false,"given":"Paco","family":"C\u00e1rdenas","sequence":"additional","affiliation":[{"name":"Pharmacognosy, Department of Medicinal Chemistry, Uppsala University , Uppsala 75123 ,","place":["Sweden"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9117-0598","authenticated-orcid":false,"given":"Vasiliki","family":"Koutsouveli","sequence":"additional","affiliation":[{"name":"Department of Marine Ecology, GEOMAR Helmholtz Centre for Ocean Research Kiel , Kiel ,","place":["Germany"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4885-3788","authenticated-orcid":false,"given":"Francisca","family":"Correia de Carvalho","sequence":"additional","affiliation":[{"name":"R\u00e5dgivende Biologer AS , 5059 Bergen ,","place":["Norway"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3784-4533","authenticated-orcid":false,"given":"Ellen","family":"Kenchington","sequence":"additional","affiliation":[{"name":"Department of Fisheries and Oceans, Bedford Institute of Oceanography , Dartmouth, NS B2Y 4A2 ,","place":["Canada"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2087-0885","authenticated-orcid":false,"given":"Andrew J","family":"Davies","sequence":"additional","affiliation":[{"name":"Biological Sciences, University of Rhode Island , Kingston, RI 02881 ,","place":["USA"]},{"name":"Graduate School of Oceanography, University of Rhode Island , Narragansett, RI 02882 ,","place":["USA"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5538-7746","authenticated-orcid":false,"given":"Shuangqiang","family":"Wang","sequence":"additional","affiliation":[{"name":"Department of Fisheries and Oceans, Bedford Institute of Oceanography , Dartmouth, NS B2Y 4A2 ,","place":["Canada"]},{"name":"School of Marine Science and Technology, Northwestern Polytechnical University , Xi\u2019an 710072 ,","place":["China"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2366-7660","authenticated-orcid":false,"given":"Marta","family":"Mart\u00edn-Huete","sequence":"additional","affiliation":[{"name":"Dept. de Biologia Evolutiva, Ecologia i Ci\u00e8ncies Ambientals, Universitat de Barcelona , Barcelona ,","place":["Spain"]},{"name":"Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona , Barcelona ,","place":["Spain"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3650-2961","authenticated-orcid":false,"given":"Emyr Martyn","family":"Roberts","sequence":"additional","affiliation":[{"name":"School of Ocean Sciences, Bangor University , Menai Bridge LL59 5AB ,","place":["UK"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1386-4492","authenticated-orcid":false,"given":"Joana R","family":"Xavier","sequence":"additional","affiliation":[{"name":"CIIMAR\/CIMAR LA, Interdisciplinary Centre of Marine and Environmental Research, University of Porto , Matosinhos 4450-208 ,","place":["Portugal"]},{"name":"Department of Natural History, University Museum of Bergen, University of Bergen , Bergen 5020 ,","place":["Norway"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7004-7435","authenticated-orcid":false,"given":"David","family":"Combosch","sequence":"additional","affiliation":[{"name":"Island Evolution Lab, Marine Laboratory, University of Guam , Mangilao,Guam ,","place":["USA"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7993-1523","authenticated-orcid":false,"given":"Ana","family":"Riesgo","sequence":"additional","affiliation":[{"name":"Departamento de Biodiversidad y Biolog\u00eda Evolutiva, Museo Nacional de Ciencias Naturales (MNCN), CSIC , Madrid 28006 ,","place":["Spain"]},{"name":"Department of Life Sciences, Natural History Museum , London SW7 5BD ,","place":["UK"]},{"name":"Departamento de Ciencias de la Vida, EU-US Marine Biodiversity Group, Universidad de Alcal\u00e1 , 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