{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,3]],"date-time":"2026-04-03T06:41:26Z","timestamp":1775198486959,"version":"3.50.1"},"reference-count":80,"publisher":"Oxford University Press (OUP)","issue":"11","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2012,11]]},"DOI":"10.1093\/molbev\/mss157","type":"journal-article","created":{"date-parts":[[2012,6,12]],"date-time":"2012-06-12T04:33:06Z","timestamp":1339475586000},"page":"3497-3512","source":"Crossref","is-referenced-by-count":46,"title":["Evolution and Diversification of the Organellar Release Factor Family"],"prefix":"10.1093","volume":"29","author":[{"given":"Isabel","family":"Duarte","sequence":"first","affiliation":[]},{"given":"Sander B.","family":"Nabuurs","sequence":"additional","affiliation":[]},{"given":"Ramiro","family":"Magno","sequence":"additional","affiliation":[]},{"given":"Martijn","family":"Huynen","sequence":"additional","affiliation":[]}],"member":"286","published-online":{"date-parts":[[2012,7,24]]},"reference":[{"key":"key\n\t\t\t\t20170418140549_mss157-B1","doi-asserted-by":"crossref","first-page":"3389","DOI":"10.1093\/nar\/25.17.3389","article-title":"Gapped BLAST and PSI-BLAST: a new generation of protein database search programs","volume":"25","author":"Altschul","year":"1997","journal-title":"Nucleic Acids Res"},{"key":"key\n\t\t\t\t20170418140549_mss157-B2","doi-asserted-by":"crossref","first-page":"115","DOI":"10.1016\/j.ajhg.2010.06.004","article-title":"Mutations in C12orf65 in patients with encephalomyopathy and a mitochondrial translation defect","volume":"87","author":"Antonicka","year":"2010","journal-title":"Am J Hum Genet."},{"key":"key\n\t\t\t\t20170418140549_mss157-B3","volume-title":"Organelle genetics\u2014plastid origins","author":"Archibald","year":"2012"},{"key":"key\n\t\t\t\t20170418140549_mss157-B4","doi-asserted-by":"crossref","first-page":"17241","DOI":"10.1074\/jbc.M910448199","article-title":"Functional characterization of yeast mitochondrial release factor 1","volume":"275","author":"Askarian-Amiri","year":"2000","journal-title":"J Biol Chem."},{"key":"key\n\t\t\t\t20170418140549_mss157-B5","doi-asserted-by":"crossref","first-page":"28","DOI":"10.1186\/1745-6150-1-28","article-title":"Diverse bacterial genomes encode an operon of two genes, one of which is an unusual class-I release factor that potentially recognizes atypical mRNA signals other than normal stop codons","volume":"1","author":"Baranov","year":"2006","journal-title":"Biol Direct."},{"key":"key\n\t\t\t\t20170418140549_mss157-B6","doi-asserted-by":"crossref","first-page":"189","DOI":"10.1038\/282189a0","article-title":"A different genetic code in human mitochondria","volume":"282","author":"Barrell","year":"1979","journal-title":"Nature"},{"key":"key\n\t\t\t\t20170418140549_mss157-B7","doi-asserted-by":"crossref","first-page":"1698","DOI":"10.1093\/molbev\/msq059","article-title":"Phylogenomic evidence for separate acquisition of plastids in cryptophytes, haptophytes, and stramenopiles","volume":"27","author":"Baurain","year":"2010","journal-title":"Mol Biol Evol."},{"key":"key\n\t\t\t\t20170418140549_mss157-B8","doi-asserted-by":"crossref","first-page":"725","DOI":"10.1006\/jmbi.2001.5359","article-title":"Crystal structure of the 30 S ribosomal subunit from Thermus thermophilus: structure of the proteins and their interactions with 16 S RNA","volume":"316","author":"Brodersen","year":"2002","journal-title":"J Mol Biol."},{"key":"key\n\t\t\t\t20170418140549_mss157-B9","doi-asserted-by":"crossref","first-page":"2001","DOI":"10.1110\/ps.03154503","article-title":"A graph-theory algorithm for rapid protein side-chain prediction","volume":"12","author":"Canutescu","year":"2003","journal-title":"Protein Sci."},{"key":"key\n\t\t\t\t20170418140549_mss157-B10","doi-asserted-by":"crossref","first-page":"34479","DOI":"10.1074\/jbc.R111.290585","article-title":"Termination of protein synthesis in mammalian mitochondria","volume":"286","author":"Chrzanowska-Lightowlers","year":"2011","journal-title":"J Biol Chem."},{"key":"key\n\t\t\t\t20170418140549_mss157-B11","doi-asserted-by":"crossref","first-page":"210","DOI":"10.1186\/1471-2148-10-210","article-title":"BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments","volume":"10","author":"Criscuolo","year":"2010","journal-title":"BMC Evol Biol."},{"key":"key\n\t\t\t\t20170418140549_mss157-B12","doi-asserted-by":"crossref","first-page":"51","DOI":"10.1016\/S1434-4610(98)70009-4","article-title":"Evidence for a single origin of the 35 kb plastid DNA in Apicomplexans","volume":"149","author":"Denny","year":"1998","journal-title":"Protist"},{"key":"key\n\t\t\t\t20170418140549_mss157-B13","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1007\/s00294-008-0223-9","article-title":"Import of tRNAs and aminoacyl-tRNA synthetases into mitochondria","volume":"55","author":"Duch\u00eane","year":"2009","journal-title":"Curr Genet."},{"key":"key\n\t\t\t\t20170418140549_mss157-B14","doi-asserted-by":"crossref","first-page":"6518","DOI":"10.1073\/pnas.0506958103","article-title":"Mapping the Arabidopsis organelle proteome","volume":"103","author":"Dunkley","year":"2006","journal-title":"Proc Natl Acad Sci U S A."},{"key":"key\n\t\t\t\t20170418140549_mss157-B15","doi-asserted-by":"crossref","first-page":"1929","DOI":"10.1093\/bioinformatics\/btr316","article-title":"FACIL: fast and accurate genetic code inference and logo","volume":"27","author":"Dutilh","year":"2011","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170418140549_mss157-B16","doi-asserted-by":"crossref","first-page":"1792","DOI":"10.1093\/nar\/gkh340","article-title":"MUSCLE: multiple sequence alignment with high accuracy and high throughput","volume":"32","author":"Edgar","year":"2004","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170418140549_mss157-B17","doi-asserted-by":"crossref","first-page":"701","DOI":"10.1038\/372701a0","article-title":"A highly conserved eukaryotic protein family possessing properties of polypeptide chain release factor","volume":"372","author":"Frolova","year":"1994","journal-title":"Nature"},{"key":"key\n\t\t\t\t20170418140549_mss157-B18","doi-asserted-by":"crossref","first-page":"1370","DOI":"10.1126\/science.1217443","article-title":"Structural basis for the rescue of stalled ribosomes: structure of YaeJ bound to the ribosome","volume":"335","author":"Gagnon","year":"2012","journal-title":"Science"},{"key":"key\n\t\t\t\t20170418140549_mss157-B19","doi-asserted-by":"crossref","first-page":"260","DOI":"10.1016\/j.jmb.2010.09.033","article-title":"Solution structure of the catalytic domain of the mitochondrial protein ICT1 that is essential for cell vitality","volume":"404","author":"Handa","year":"2010","journal-title":"J Mol Biol."},{"key":"key\n\t\t\t\t20170418140549_mss157-B20","doi-asserted-by":"crossref","first-page":"1739","DOI":"10.1093\/nar\/gkq1097","article-title":"YaeJ is a novel ribosome-associated protein in Escherichia coli that can hydrolyze peptidyl-tRNA on stalled ribosomes","volume":"39","author":"Handa","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170418140549_mss157-B21","doi-asserted-by":"crossref","first-page":"29","DOI":"10.1007\/s002940050096","article-title":"UAG is a sense codon in several chlorophycean mitochondria","volume":"30","author":"Hayashi-Ishimaru","year":"1996","journal-title":"Curr Genet."},{"key":"key\n\t\t\t\t20170418140549_mss157-B22","doi-asserted-by":"crossref","first-page":"241","DOI":"10.1105\/tpc.016055","article-title":"Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins","volume":"16","author":"Heazlewood","year":"2004","journal-title":"The Plant Cell"},{"key":"key\n\t\t\t\t20170418140549_mss157-B23","doi-asserted-by":"crossref","first-page":"1440","DOI":"10.1093\/molbev\/msn088","article-title":"Mitochondrial genome evolution in the social amoebae","volume":"25","author":"Heidel","year":"2008","journal-title":"Mol Biol Evol."},{"key":"key\n\t\t\t\t20170418140549_mss157-B24","doi-asserted-by":"crossref","first-page":"1107","DOI":"10.1093\/molbev\/msp320","article-title":"Divergence of the mitochondrial genome structure in the apicomplexan parasites, Babesia and Theileria","volume":"27","author":"Hikosaka","year":"2010","journal-title":"Mol Biol Evol."},{"key":"key\n\t\t\t\t20170418140549_mss157-B25","doi-asserted-by":"crossref","first-page":"272","DOI":"10.1038\/381272a0","article-title":"Errors in protein structures","volume":"381","author":"Hooft","year":"1996","journal-title":"Nature"},{"key":"key\n\t\t\t\t20170418140549_mss157-B26","doi-asserted-by":"crossref","first-page":"1546","DOI":"10.1093\/bioinformatics\/18.11.1546","article-title":"QuickTree: building huge Neighbour-Joining trees of protein sequences","volume":"18","author":"Howe","year":"2002","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170418140549_mss157-B27","doi-asserted-by":"crossref","first-page":"686","DOI":"10.1038\/nature02026","article-title":"Global analysis of protein localization in budding yeast","volume":"425","author":"Huh","year":"2003","journal-title":"Nature"},{"key":"key\n\t\t\t\t20170418140549_mss157-B28","doi-asserted-by":"crossref","first-page":"14","DOI":"10.1186\/1745-6150-7-14","article-title":"Structure based hypothesis of a mitochondrial ribosome rescue mechanism","volume":"7","author":"Huynen","year":"2012","journal-title":"Biol Direct."},{"key":"key\n\t\t\t\t20170418140549_mss157-B29","doi-asserted-by":"crossref","first-page":"192","DOI":"10.1186\/1756-0500-2-192","article-title":"A unique genetic code change in the mitochondrial genome of the parasitic nematode Radopholus similis","volume":"2","author":"Jacob","year":"2009","journal-title":"BMC Res Notes."},{"key":"key\n\t\t\t\t20170418140549_mss157-B30","doi-asserted-by":"crossref","first-page":"10949","DOI":"10.1073\/pnas.1003335107","article-title":"A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids","volume":"107","author":"Janouskovec","year":"2010","journal-title":"Proc Natl Acad Sci U S A."},{"key":"key\n\t\t\t\t20170418140549_mss157-B31","doi-asserted-by":"crossref","first-page":"1117","DOI":"10.1007\/BF01936921","article-title":"The genetic code in mitochondria and chloroplasts","volume":"46","author":"Jukes","year":"1990","journal-title":"Experientia"},{"key":"key\n\t\t\t\t20170418140549_mss157-B32","doi-asserted-by":"crossref","first-page":"511","DOI":"10.1093\/nar\/gki198","article-title":"MAFFT version 5: improvement in accuracy of multiple sequence alignment","volume":"33","author":"Katoh","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170418140549_mss157-B33","doi-asserted-by":"crossref","first-page":"729","DOI":"10.1098\/rstb.2009.0103","article-title":"The endosymbiotic origin, diversification and fate of plastids","volume":"365","author":"Keeling","year":"2010","journal-title":"Philos Trans R Soc Lond B Biol Sci."},{"key":"key\n\t\t\t\t20170418140549_mss157-B34","doi-asserted-by":"crossref","first-page":"173","DOI":"10.1016\/j.cell.2006.01.044","article-title":"Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling","volume":"125","author":"Kislinger","year":"2006","journal-title":"Cell"},{"key":"key\n\t\t\t\t20170418140549_mss157-B35","doi-asserted-by":"crossref","first-page":"49","DOI":"10.1038\/35047500","article-title":"Rewiring the keyboard: evolvability of the genetic code","volume":"2","author":"Knight","year":"2001","journal-title":"Nat Rev Genet."},{"key":"key\n\t\t\t\t20170418140549_mss157-B36","doi-asserted-by":"crossref","first-page":"19684","DOI":"10.1073\/pnas.0810953105","article-title":"Crystal structure of a translation termination complex formed with release factor RF2","volume":"105","author":"Korostelev","year":"2008","journal-title":"Proc Natl Acad Sci U S A."},{"key":"key\n\t\t\t\t20170418140549_mss157-B37","doi-asserted-by":"crossref","first-page":"2577","DOI":"10.1038\/emboj.2010.139","article-title":"Recognition of the amber UAG stop codon by release factor RF1","volume":"29","author":"Korostelev","year":"2010","journal-title":"EMBO J."},{"key":"key\n\t\t\t\t20170418140549_mss157-B39","doi-asserted-by":"crossref","first-page":"114","DOI":"10.1002\/prot.22570","article-title":"Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: four approaches that performed well in CASP8","volume":"77","author":"Krieger","year":"2009","journal-title":"Proteins"},{"key":"key\n\t\t\t\t20170418140549_mss157-B38","doi-asserted-by":"crossref","first-page":"393","DOI":"10.1002\/prot.10104","article-title":"Increasing the precision of comparative models with YASARA NOVA\u2014a self-parameterizing force field","volume":"47","author":"Krieger","year":"2002","journal-title":"Proteins"},{"key":"key\n\t\t\t\t20170418140549_mss157-B40","doi-asserted-by":"crossref","first-page":"2286","DOI":"10.1093\/bioinformatics\/btp368","article-title":"PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating","volume":"25","author":"Lartillot","year":"2009","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170418140549_mss157-B41","doi-asserted-by":"crossref","first-page":"852","DOI":"10.1038\/nature07115","article-title":"Structural basis for translation termination on the 70S ribosome","volume":"454","author":"Laurberg","year":"2008","journal-title":"Nature"},{"key":"key\n\t\t\t\t20170418140549_mss157-B42","doi-asserted-by":"crossref","first-page":"3548","DOI":"10.1016\/S0021-9258(18)61386-9","article-title":"Isolation of a rat mitochondrial release factor. Accommodation of the changed genetic code for termination","volume":"262","author":"Lee","year":"1987","journal-title":"J Biol Chem."},{"key":"key\n\t\t\t\t20170418140549_mss157-B43","doi-asserted-by":"crossref","first-page":"4539","DOI":"10.1002\/pmic.200900101","article-title":"Proteomic analysis of mitochondria from Caenorhabditis elegans","volume":"9","author":"Li","year":"2009","journal-title":"Proteomics"},{"key":"key\n\t\t\t\t20170418140549_mss157-B44","doi-asserted-by":"crossref","first-page":"425","DOI":"10.1016\/j.protis.2005.09.001","article-title":"A plastid in the making: evidence for a second primary endosymbiosis","volume":"156","author":"Marin","year":"2005","journal-title":"Protist"},{"key":"key\n\t\t\t\t20170418140549_mss157-B45","doi-asserted-by":"crossref","first-page":"841","DOI":"10.1038\/nbt1222","article-title":"ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe","volume":"24","author":"Matsuyama","year":"2006","journal-title":"Nat Biotechnol."},{"key":"key\n\t\t\t\t20170418140549_mss157-B46","doi-asserted-by":"crossref","first-page":"3255","DOI":"10.1105\/tpc.006809","article-title":"A peptide chain release factor 2 affects the stability of UGA-containing transcripts in Arabidopsis chloroplasts","volume":"14","author":"Meurer","year":"2002","journal-title":"Plant Cell"},{"key":"key\n\t\t\t\t20170418140549_mss157-B47","doi-asserted-by":"crossref","first-page":"267","DOI":"10.1046\/j.1365-2958.2003.03301.x","article-title":"The essential role of the invariant GGQ motif in the function and stability in vivo of bacterial release factors RF1 and RF2","volume":"47","author":"Mora","year":"2003","journal-title":"Mol Microbiol."},{"key":"key\n\t\t\t\t20170418140549_mss157-B48","doi-asserted-by":"crossref","first-page":"189","DOI":"10.1093\/oxfordjournals.molbev.a004071","article-title":"Evolution of eukaryotic translation elongation and termination factors: variations of evolutionary rate and genetic code deviations","volume":"19","author":"Moreira","year":"2002","journal-title":"Mol Biol Evol."},{"key":"key\n\t\t\t\t20170418140549_mss157-B49","doi-asserted-by":"crossref","first-page":"481","DOI":"10.1007\/s11103-007-9166-7","article-title":"Chloroplast ribosome release factor 1 (AtcpRF1) is essential for chloroplast development","volume":"64","author":"Motohashi","year":"2007","journal-title":"Plant Mol Biol."},{"key":"key\n\t\t\t\t20170418140549_mss157-B50","volume-title":"Complete Nucleotide Sequence of Pinus koraiensis.","author":"Noh","year":"2007"},{"key":"key\n\t\t\t\t20170418140549_mss157-B51","doi-asserted-by":"crossref","first-page":"429","DOI":"10.1111\/j.1365-2443.2008.01181.x","article-title":"HMRF1L is a human mitochondrial translation release factor involved in the decoding of the termination codons UAA and UAG","volume":"13","author":"Nozaki","year":"2008","journal-title":"Genes Cells."},{"key":"key\n\t\t\t\t20170418140549_mss157-B52","doi-asserted-by":"crossref","first-page":"58","DOI":"10.2183\/pjab.84.58","article-title":"Evolving genetic code","volume":"84","author":"Ohama","year":"2008","journal-title":"Proc Jpn Acad Ser B Phys Biol Sci."},{"key":"key\n\t\t\t\t20170418140549_mss157-B53","doi-asserted-by":"crossref","first-page":"1594","DOI":"10.1074\/mcp.M000038-MCP201","article-title":"Megadalton complexes in the chloroplast stroma of Arabidopsis thaliana characterized by size exclusion chromatography, mass spectrometry, and hierarchical clustering","volume":"9","author":"Olinares","year":"2010","journal-title":"Mol Cell Proteomics."},{"key":"key\n\t\t\t\t20170418140549_mss157-B54","doi-asserted-by":"crossref","first-page":"229","DOI":"10.1128\/MMBR.56.1.229-264.1992","article-title":"Recent evidence for evolution of the genetic code","volume":"56","author":"Osawa","year":"1992","journal-title":"Microbiol Rev."},{"key":"key\n\t\t\t\t20170418140549_mss157-B55","doi-asserted-by":"crossref","first-page":"112","DOI":"10.1016\/j.cell.2008.06.016","article-title":"A mitochondrial protein compendium elucidates complex I disease biology","volume":"134","author":"Pagliarini","year":"2008","journal-title":"Cell"},{"key":"key\n\t\t\t\t20170418140549_mss157-B56","doi-asserted-by":"crossref","first-page":"3367","DOI":"10.1021\/pr900018z","article-title":"Construction of functional interaction networks through consensus localization predictions of the human proteome","volume":"8","author":"Park","year":"2009","journal-title":"J Proteome Res."},{"key":"key\n\t\t\t\t20170418140549_mss157-B57","doi-asserted-by":"crossref","first-page":"70","DOI":"10.1016\/j.sbi.2007.11.005","article-title":"The termination of translation","volume":"18","author":"Petry","year":"2008","journal-title":"Curr Opin Struct Biol."},{"key":"key\n\t\t\t\t20170418140549_mss157-B58","doi-asserted-by":"crossref","first-page":"e115","DOI":"10.1371\/journal.ppat.0030115","article-title":"Dual targeting of antioxidant and metabolic enzymes to the mitochondrion and the apicoplast of Toxoplasma gondii","volume":"3","author":"Pino","year":"2007","journal-title":"PLoS Pathog."},{"key":"key\n\t\t\t\t20170418140549_mss157-B59","doi-asserted-by":"crossref","first-page":"5641","DOI":"10.1016\/j.febslet.2006.09.010","article-title":"Plant mitochondrial genes can be expressed from mRNAs lacking stop codons","volume":"580","author":"Raczynska","year":"2006","journal-title":"FEBS Lett."},{"key":"key\n\t\t\t\t20170418140549_mss157-B60","doi-asserted-by":"crossref","first-page":"309","DOI":"10.1111\/j.1365-2958.2006.05528.x","article-title":"Subcellular multitasking\u2014multiple destinations and roles for the Plasmodium falcilysin protease","volume":"63","author":"Ralph","year":"2007","journal-title":"Mol Microbiol."},{"key":"key\n\t\t\t\t20170418140549_mss157-B61","doi-asserted-by":"crossref","first-page":"147","DOI":"10.1146\/annurev.genet.41.110306.130134","article-title":"The origin and establishment of the plastid in algae and plants","volume":"41","author":"Reyes-Prieto","year":"2007","journal-title":"Annu Rev Genet."},{"key":"key\n\t\t\t\t20170418140549_mss157-B62","doi-asserted-by":"crossref","first-page":"1116","DOI":"10.1038\/emboj.2010.14","article-title":"A functional peptidyl-tRNA hydrolase, ICT1, has been recruited into the human mitochondrial ribosome","volume":"29","author":"Richter","year":"2010","journal-title":"EMBO J."},{"key":"key\n\t\t\t\t20170418140549_mss157-B63","doi-asserted-by":"crossref","first-page":"1198","DOI":"10.1016\/j.bbabio.2011.06.010","article-title":"Human diseases with impaired mitochondrial protein synthesis","volume":"1807","author":"R\u00f6tig","year":"2011","journal-title":"Biochim Biophys Acta."},{"key":"key\n\t\t\t\t20170418140549_mss157-B64","doi-asserted-by":"crossref","first-page":"768","DOI":"10.1073\/pnas.61.2.768","article-title":"Release factors differing in specificity for terminator codons","volume":"61","author":"Scolnick","year":"1968","journal-title":"Proc Natl Acad Sci U S A."},{"key":"key\n\t\t\t\t20170418140549_mss157-B65","doi-asserted-by":"crossref","first-page":"3982","DOI":"10.1093\/nar\/29.19.3982","article-title":"Class-1 translation termination factors: invariant GGQ minidomain is essential for release activity and ribosome binding but not for stop codon recognition","volume":"29","author":"Seit-Nebi","year":"2001","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170418140549_mss157-B66","doi-asserted-by":"crossref","first-page":"662","DOI":"10.1007\/s00239-006-0284-7","article-title":"The mechanisms of codon reassignments in mitochondrial genetic codes","volume":"64","author":"Sengupta","year":"2007","journal-title":"J Mol Evol."},{"key":"key\n\t\t\t\t20170418140549_mss157-B67","doi-asserted-by":"crossref","first-page":"R693","DOI":"10.1016\/j.cub.2004.08.038","article-title":"The real \u2018kingdoms\u2019 of eukaryotes","volume":"14","author":"Simpson","year":"2004","journal-title":"Curr Biol."},{"key":"key\n\t\t\t\t20170418140549_mss157-B68","doi-asserted-by":"crossref","first-page":"W244","DOI":"10.1093\/nar\/gki408","article-title":"The HHpred interactive server for protein homology detection and structure prediction","volume":"33","author":"S\u00f6ding","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170418140549_mss157-B69","doi-asserted-by":"crossref","first-page":"745","DOI":"10.1016\/j.molcel.2007.06.031","article-title":"mtRF1a is a human mitochondrial translation release factor decoding the major termination codons UAA and UAG","volume":"27","author":"Soleimanpour-Lichaei","year":"2007","journal-title":"Mol Cell."},{"key":"key\n\t\t\t\t20170418140549_mss157-B70","doi-asserted-by":"crossref","first-page":"4012","DOI":"10.1002\/pmic.201000329","article-title":"Mosaic origin of the mitochondrial proteome","volume":"10","author":"Szklarczyk","year":"2010","journal-title":"Proteomics"},{"key":"key\n\t\t\t\t20170418140549_mss157-B71","doi-asserted-by":"crossref","first-page":"301","DOI":"10.1126\/science.1180674","article-title":"Hungry codons promote frameshifting in human mitochondrial ribosomes","volume":"327","author":"Temperley","year":"2010","journal-title":"Science"},{"key":"key\n\t\t\t\t20170418140549_mss157-B72","doi-asserted-by":"crossref","first-page":"4673","DOI":"10.1093\/nar\/22.22.4673","article-title":"CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice","volume":"22","author":"Thompson","year":"1994","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170418140549_mss157-B73","doi-asserted-by":"crossref","first-page":"11","DOI":"10.2183\/pjab.86.11","article-title":"Unique features of animal mitochondrial translation systems. The non-universal genetic code, unusual features of the translational apparatus and their relevance to human mitochondrial diseases","volume":"86","author":"Watanabe","year":"2010","journal-title":"Proc Jpn Acad Ser B Phys Biol Sci."},{"key":"key\n\t\t\t\t20170418140549_mss157-B74","doi-asserted-by":"crossref","first-page":"1189","DOI":"10.1093\/bioinformatics\/btp033","article-title":"Jalview Version 2\u2014a multiple sequence alignment editor and analysis workbench","volume":"25","author":"Waterhouse","year":"2009","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170418140549_mss157-B75","doi-asserted-by":"crossref","first-page":"268","DOI":"10.1126\/science.1167222","article-title":"Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas","volume":"324","author":"Worden","year":"2009","journal-title":"Science"},{"key":"key\n\t\t\t\t20170418140549_mss157-B76","doi-asserted-by":"crossref","first-page":"1056","DOI":"10.1038\/nature08656","article-title":"A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea","volume":"462","author":"Wu","year":"2009","journal-title":"Nature"},{"key":"key\n\t\t\t\t20170418140549_mss157-B77","doi-asserted-by":"crossref","first-page":"98","DOI":"10.1186\/1471-2148-9-98","article-title":"A single origin of the photosynthetic organelle in different Paulinella lineages","volume":"9","author":"Yoon","year":"2009","journal-title":"BMC Evol Biol."},{"key":"key\n\t\t\t\t20170418140549_mss157-B78","doi-asserted-by":"crossref","first-page":"1146","DOI":"10.1261\/rna.1970310","article-title":"Bioinformatic, structural, and functional analyses support release factor-like MTRF1 as a protein able to decode nonstandard stop codons beginning with adenine in vertebrate mitochondria","volume":"16","author":"Young","year":"2010","journal-title":"RNA"},{"key":"key\n\t\t\t\t20170418140549_mss157-B79","doi-asserted-by":"crossref","first-page":"1623","DOI":"10.1261\/rna.2117010","article-title":"The codon specificity of eubacterial release factors is determined by the sequence and size of the recognition loop","volume":"16","author":"Young","year":"2010","journal-title":"RNA"},{"key":"key\n\t\t\t\t20170418140549_mss157-B80","doi-asserted-by":"crossref","first-page":"e1994","DOI":"10.1371\/journal.pone.0001994","article-title":"Sorting signals, N-terminal modifications and abundance of the chloroplast proteome","volume":"3","author":"Zybailov","year":"2008","journal-title":"PLoS ONE."}],"container-title":["Molecular Biology and Evolution"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/mbe\/article-pdf\/29\/11\/3497\/13647883\/mss157.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,1,17]],"date-time":"2022-01-17T19:21:30Z","timestamp":1642447290000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/mbe\/article-lookup\/doi\/10.1093\/molbev\/mss157"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012,7,24]]},"references-count":80,"journal-issue":{"issue":"11","published-online":{"date-parts":[[2012,7,24]]},"published-print":{"date-parts":[[2012,11]]}},"URL":"https:\/\/doi.org\/10.1093\/molbev\/mss157","relation":{},"ISSN":["1537-1719","0737-4038"],"issn-type":[{"value":"1537-1719","type":"electronic"},{"value":"0737-4038","type":"print"}],"subject":[],"published":{"date-parts":[[2012,7,24]]}}}