{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,16]],"date-time":"2026-02-16T08:30:36Z","timestamp":1771230636281,"version":"3.50.1"},"reference-count":81,"publisher":"Oxford University Press (OUP)","issue":"10","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2017,10]]},"DOI":"10.1093\/molbev\/msx167","type":"journal-article","created":{"date-parts":[[2017,5,25]],"date-time":"2017-05-25T11:08:28Z","timestamp":1495710508000},"page":"2522-2536","source":"Crossref","is-referenced-by-count":27,"title":["Adaptive Patterns of Mitogenome Evolution Are Associated with the Loss of Shell Scutes in Turtles"],"prefix":"10.1093","volume":"34","author":[{"given":"Tibisay","family":"Escalona","sequence":"first","affiliation":[]},{"given":"Cameron J.","family":"Weadick","sequence":"additional","affiliation":[]},{"given":"Agostinho","family":"Antunes","sequence":"additional","affiliation":[]}],"member":"286","published-online":{"date-parts":[[2017,6,6]]},"reference":[{"key":"key\n\t\t\t\t20170923054612_msx167-B1","doi-asserted-by":"crossref","first-page":"182","DOI":"10.1016\/j.zool.2005.11.005","article-title":"Skin structure and cornification proteins in the soft-shelled turtle Trionyx spiniferus","volume":"109","year":"2006","journal-title":"Zoology"},{"key":"key\n\t\t\t\t20170923054612_msx167-B2","doi-asserted-by":"crossref","first-page":"489","DOI":"10.1146\/annurev.es.18.110187.002421","article-title":"Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics","volume":"18","year":"1987","journal-title":"Annu Rev Ecol Syst"},{"key":"key\n\t\t\t\t20170923054612_msx167-B3","first-page":"1","article-title":"Hydrodynamic role of longitudinal dorsal ridges in a leatherback turtle swimming","volume":"6","year":"2016","journal-title":"Sci Rep"},{"key":"key\n\t\t\t\t20170923054612_msx167-B4","first-page":"121","article-title":"A maximum likelihood method for detecting functional divergence at individual codon sites, with application to gene family evolution","volume":"59","year":"2004","journal-title":"J Mol Evol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B5","first-page":"411","article-title":"How should salinity influence fish growth?","volume":"130","year":"2001","journal-title":"Comp Biochem Physio Part C"},{"key":"key\n\t\t\t\t20170923054612_msx167-B6","doi-asserted-by":"crossref","first-page":"e13925.","DOI":"10.1371\/journal.pone.0013925","article-title":"Behaviour and physiology: the thermal strategy of leatherback turtles","volume":"5","year":"2010","journal-title":"PLoS One"},{"key":"key\n\t\t\t\t20170923054612_msx167-B7","first-page":"136.","article-title":"Mitochondrial-encoded membrane protein transcripts are pyrimidine-rich while soluble protein transcripts and ribosomal RNA are purine-rich","volume":"6","year":"2005","journal-title":"BioMed Central Genomics"},{"key":"key\n\t\t\t\t20170923054612_msx167-B8","doi-asserted-by":"crossref","first-page":"799","DOI":"10.1042\/BST0390799","article-title":"The mitochondrial-encoded subunits of respiratory complex I NADH: ubiquinone oxidoreductase): identifying residues important in mechanism and disease","volume":"39","year":"2011","journal-title":"Biochem Soc Trans"},{"key":"key\n\t\t\t\t20170923054612_msx167-B9","doi-asserted-by":"crossref","first-page":"e0123543.","DOI":"10.1371\/journal.pone.0123543","article-title":"Initial evidence for adaptive selection on the NADH subunit two of freshwater dolphins by analyses of mitochondrial genomes","volume":"10","year":"2015","journal-title":"PLoS One"},{"key":"key\n\t\t\t\t20170923054612_msx167-B10","doi-asserted-by":"crossref","first-page":"1067","DOI":"10.1093\/gbe\/evr040","article-title":"Evolutionary patterns of the mitochondrial genome in metazoa: exploring the role of mutation and selection in mitochondrial protein\u2013coding genes","volume":"3","year":"2011","journal-title":"Genome Biol Evol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B11","doi-asserted-by":"crossref","first-page":"e2201.","DOI":"10.1371\/journal.pone.0002201","article-title":"Adaptive evolution and functional redesign of core metabolic proteins in snakes","volume":"3","year":"2008","journal-title":"PLoS One"},{"key":"key\n\t\t\t\t20170923054612_msx167-B12","doi-asserted-by":"crossref","first-page":"145","DOI":"10.1093\/acprof:osobl\/9780199601165.003.0011","volume-title":"Codon evolution: mechanisms and models","year":"2012"},{"key":"key\n\t\t\t\t20170923054612_msx167-B13","doi-asserted-by":"crossref","first-page":"703","DOI":"10.1111\/j.1469-185X.2010.00122.x","article-title":"Temperature, metabolic power and the evolution of endotermy","volume":"85","year":"2010","journal-title":"Biol Rev"},{"key":"key\n\t\t\t\t20170923054612_msx167-B14","doi-asserted-by":"crossref","first-page":"58.","DOI":"10.1186\/s12711-015-0138-0","article-title":"Patterns of natural selection acting on the mitochondrial genome of a locally adapted fish species","volume":"47","year":"2015","journal-title":"Genet Select Evol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B16","doi-asserted-by":"crossref","first-page":"1188","DOI":"10.1101\/gr.849004","article-title":"WebLogo: a sequence logo generator","volume":"14","year":"2004","journal-title":"Genome Res"},{"key":"key\n\t\t\t\t20170923054612_msx167-B17","doi-asserted-by":"crossref","first-page":"119.","DOI":"10.1186\/1471-2164-9-119","article-title":"The adaptive evolution of the mammalian mitochondrial genome","volume":"9","year":"2008","journal-title":"BMC Genomics"},{"key":"key\n\t\t\t\t20170923054612_msx167-B18","doi-asserted-by":"crossref","first-page":"319","DOI":"10.1007\/s00239-005-0110-7","article-title":"Molecular evolution of cytochrome c oxidase in high-performance fish (Teleostei: Scombroidei)","volume":"62","year":"2006","journal-title":"J Mol Evol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B19","doi-asserted-by":"crossref","first-page":"772.","DOI":"10.1038\/nmeth.2109","article-title":"jModelTest 2: more models, new heuristics and high-performance computing","volume":"9","year":"2012","journal-title":"Nature Methods"},{"key":"key\n\t\t\t\t20170923054612_msx167-B20","doi-asserted-by":"crossref","first-page":"3474","DOI":"10.1242\/jeb.057182","article-title":"Pleated turtle escapes the box \u2013 shape changes in Dermochelys coriacea","volume":"214","year":"2011","journal-title":"J Exp Biol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B21","doi-asserted-by":"crossref","first-page":"546","DOI":"10.1016\/j.tree.2008.05.011","article-title":"Evolutionary implications of non-neutral mitochondrial genetic variation","volume":"23","year":"2008","journal-title":"Trends Ecol Evol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B22","doi-asserted-by":"crossref","first-page":"1792","DOI":"10.1093\/nar\/gkh340","article-title":"MUSCLE: multiple sequence alignment with high accuracy and high throughput","volume":"32","year":"2004","journal-title":"Nucleic Acids Res"},{"key":"key\n\t\t\t\t20170923054612_msx167-B23","first-page":"313","volume-title":"Turtles of the world","year":"1989"},{"key":"key\n\t\t\t\t20170923054612_msx167-B24","doi-asserted-by":"crossref","first-page":"406","DOI":"10.1038\/nature19794","article-title":"Atomic structure of the entire mammalian mitochondrial complex I","volume":"538","year":"2016","journal-title":"Nat Lett"},{"key":"key\n\t\t\t\t20170923054612_msx167-B25","doi-asserted-by":"crossref","first-page":"2257","DOI":"10.1093\/molbev\/msq115","article-title":"The effect of insertions, deletions, and alignment errors on the branch-site test of positive selection","volume":"27","year":"2010","journal-title":"Mol Biol Evol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B26","doi-asserted-by":"crossref","first-page":"3283","DOI":"10.1242\/jeb.087155","article-title":"Beating oxygen: chronic anoxia exposure reduces mitochondrial F1FO-ATPase activity in turtle (Trachemys Scripta) heart","volume":"216","year":"2013","journal-title":"J Exp Biol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B27","doi-asserted-by":"crossref","first-page":"e24127.","DOI":"10.1371\/journal.pone.0024127","article-title":"Positive Darwinian selection in the piston that powers proton pumps in Complex I of the mitochondria of Pacific salmon","volume":"6","year":"2011","journal-title":"PLoS One"},{"key":"key\n\t\t\t\t20170923054612_msx167-B28","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1111\/jzs.12079","article-title":"Review and meta-analysis of natural selection in mitochondrial complex I in metazoans","volume":"53","year":"2015","journal-title":"J Zool Syst Evol Res"},{"key":"key\n\t\t\t\t20170923054612_msx167-B29","doi-asserted-by":"crossref","first-page":"1404","DOI":"10.1093\/gbe\/evv078","article-title":"Differential expression of genes that control respiration contribute to thermal adaptation in redband trout (Oncorhynchus mykiss gairdneri)","volume":"7","year":"2015","journal-title":"Genome Biol Evol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B30","doi-asserted-by":"crossref","first-page":"115","DOI":"10.3374\/014.058.0106","article-title":"A review of the fossil record of Old World turtles of the clade Pan-Trionychidae","volume":"58","year":"2017","journal-title":"Bull Peabody Mus Nat Hist"},{"key":"key\n\t\t\t\t20170923054612_msx167-B31","doi-asserted-by":"crossref","first-page":"206","DOI":"10.1016\/0010-406X(61)90056-1","article-title":"Aquatic respiration in the common Nile turtle, Trionyx triunguis (Forskal)","volume":"3","year":"1961","journal-title":"Comp Biochem Physiol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B32","doi-asserted-by":"crossref","first-page":"975","DOI":"10.1093\/oxfordjournals.molbev.a026378","article-title":"Statistical tests of gamma-distributed rate heterogeneity in models of sequence evolution in phylogenetics","volume":"17","year":"2000","journal-title":"Mol Biol Evol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B33","first-page":"725","article-title":"A codon-based model of nucleotide substitution for protein-coding DNA sequences","volume":"11","year":"1994","journal-title":"Mol Biol Evol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B34","doi-asserted-by":"crossref","first-page":"639","DOI":"10.1038\/nature19359","article-title":"The arquitecture of the mammalian respirasome","volume":"537","year":"2016","journal-title":"Nature"},{"key":"key\n\t\t\t\t20170923054612_msx167-B35","doi-asserted-by":"crossref","first-page":"147","DOI":"10.1163\/18759866-08103002","article-title":"A large phylogeny of turtles (Testudines) using molecular data","volume":"81","year":"2012","journal-title":"Contrib Zool"},{"key":"key\n\t\t\t\t20170923054612_msx167-B36","doi-asserted-by":"crossref","first-page":"307","DOI":"10.1093\/sysbio\/syq010","article-title":"New algorithms and methods to estimate Maximum-Likelihood phylogenies: assessing the performance of PhyML 3.0","volume":"59","year":"2010","journal-title":"Syst Biol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B37","doi-asserted-by":"crossref","first-page":"3","DOI":"10.3374\/0079-032X(2007)48[3:PROMT]2.0.CO;2","article-title":"Phylogenetic relationships of Mesozoic turtles","volume":"48","year":"2007","journal-title":"Bull Peabody Mus Nat Hist"},{"key":"key\n\t\t\t\t20170923054612_msx167-B38","doi-asserted-by":"crossref","first-page":"3","DOI":"10.3374\/014.055.0102","article-title":"A review of the fossil record of turtles of the clade Pan-Carettochelys","volume":"55","year":"2014","journal-title":"Bull Peabody Mus Nat Hist"},{"key":"key\n\t\t\t\t20170923054612_msx167-B39","doi-asserted-by":"crossref","first-page":"846","DOI":"10.1098\/rsbl.2012.0361","article-title":"Caught in the act: the first record of copulating fossil vertebrates","volume":"8","year":"2012","journal-title":"Biol Lett"},{"key":"key\n\t\t\t\t20170923054612_msx167-B40","doi-asserted-by":"crossref","first-page":"1313","DOI":"10.1101\/gr.101386.109","article-title":"Origins, evolution, and phenotypic impact of new genes","volume":"20","year":"2010","journal-title":"Genome Res"},{"key":"key\n\t\t\t\t20170923054612_msx167-B41","first-page":"38","article-title":"The determinants of the molecular substitution process in turtles","volume":"26","year":"2012","journal-title":"J Evol Biol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B42","doi-asserted-by":"crossref","first-page":"1684","DOI":"10.1093\/bioinformatics\/bts198","article-title":"Accurate extension of multiple sequence alignments using a phylogeny-aware graph algorithm","volume":"28","year":"2012","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170923054612_msx167-B43","doi-asserted-by":"crossref","first-page":"1012","DOI":"10.1086\/physzool.63.5.30152626","article-title":"Oxygen transport in the leatherback sea turtle Dermochelys coriacea","volume":"63","year":"1990","journal-title":"Physiol Zool"},{"key":"key\n\t\t\t\t20170923054612_msx167-B44","doi-asserted-by":"crossref","first-page":"851","DOI":"10.1016\/j.bbabio.2011.08.010","article-title":"Understanding mitochondrial complex I assembly in health and disease","volume":"1817","year":"2012","journal-title":"Biochim Biophys Acta"},{"key":"key\n\t\t\t\t20170923054612_msx167-B45","doi-asserted-by":"crossref","first-page":"2820","DOI":"10.1111\/mec.13203","article-title":"Positive and purifying selection in mitochondrial genomes of a bird with mitonuclear discordance","volume":"24","year":"2015","journal-title":"Mol Ecol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B46","first-page":"715","article-title":"A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to chloroplast genome","volume":"11","year":"1994","journal-title":"Mol Biol Evol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B47","doi-asserted-by":"crossref","first-page":"584","DOI":"10.1016\/j.tree.2013.06.009","article-title":"Unifying and generalizing the two strands of evo-devo","volume":"28","year":"2013","journal-title":"Trends Ecol Evol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B48","first-page":"W23","article-title":"GUIDANCE: a web server for assessing alignment confidence scores","volume":"38 (Web Server issue)","year":"2010","journal-title":"Nucleic Acids Res"},{"key":"key\n\t\t\t\t20170923054612_msx167-B49","volume-title":"R: a language and environment for statistical computing.","author":"R Core Team","year":"2014"},{"key":"key\n\t\t\t\t20170923054612_msx167-B50","first-page":"281","article-title":"Endotherms, ectotherms, and mitochondrial genome-size variation","volume":"37","year":"1993","journal-title":"J Mol Evol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B51","doi-asserted-by":"crossref","first-page":"645","DOI":"10.1016\/j.tree.2004.10.003","article-title":"Cytonuclear coevolution: the genomics of cooperation","volume":"19","year":"2004","journal-title":"Trends Ecol Evol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B52","doi-asserted-by":"crossref","first-page":"539","DOI":"10.1093\/sysbio\/sys029","article-title":"MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space","volume":"61","year":"2012","journal-title":"Syst Biol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B53","doi-asserted-by":"crossref","first-page":"682","DOI":"10.1007\/s00239-008-9179-0","article-title":"Recoding of translation in turtle mitochondrial genomes: programmed frameshift mutations and evidence of a modified genetic code","volume":"67","year":"2008","journal-title":"J Mol Evol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B54","doi-asserted-by":"crossref","first-page":"1265","DOI":"10.1042\/BST20130193","article-title":"A long road towards the structure of respiratory complex I, a giant molecular proton pump","volume":"41","year":"2013","journal-title":"Biochem SocTrans"},{"key":"key\n\t\t\t\t20170923054612_msx167-B55","doi-asserted-by":"crossref","first-page":"375","DOI":"10.1038\/nrm3997","article-title":"A giant molecular proton pump: structure and mechanism of respiratory complex I","volume":"16","year":"2015","journal-title":"Nat Rev Mol Cell Biol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B56","doi-asserted-by":"crossref","first-page":"136","DOI":"10.1016\/j.ode.2006.03.002","article-title":"A plywood structure in the shell of fossil and living soft-shelled turtles (Trionychidae) and its evolutionary implications","volume":"7","year":"2007","journal-title":"Org Divers Evol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B57","doi-asserted-by":"crossref","first-page":"584","DOI":"10.1038\/nature14472","article-title":"A middle Triassic stem-turtle and the evolution of the turtle body plan","volume":"523","year":"2015","journal-title":"Nature"},{"key":"key\n\t\t\t\t20170923054612_msx167-B58","doi-asserted-by":"crossref","first-page":"235","DOI":"10.1093\/sysbio\/46.2.235","article-title":"Tests of turtle phylogeny: molecular, morphological, and paleontological approaches","volume":"46","year":"1997","journal-title":"Syst Biol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B59","doi-asserted-by":"crossref","first-page":"690","DOI":"10.1016\/j.bbabio.2015.04.007","article-title":"Role of subunit III and its lipids in the molecular mechanism of cytochrome c oxidase","volume":"1847","year":"2015","journal-title":"Biochim Biophys Acta"},{"key":"key\n\t\t\t\t20170923054612_msx167-B60","doi-asserted-by":"crossref","first-page":"8666","DOI":"10.1073\/pnas.0912613107","article-title":"Adaptive evolution of energy metabolism genes and the origin of flight in bats","volume":"107","year":"2010","journal-title":"Proc Nat Acad Sci"},{"key":"key\n\t\t\t\t20170923054612_msx167-B61","first-page":"228","volume-title":"The leatherback turtle: biology and conservation","year":"2015"},{"key":"key\n\t\t\t\t20170923054612_msx167-B62","first-page":"311","article-title":"Cutaneous surface area and bimodal respiration in soft-shelled (Trionyx spiniferus), stinkpot (Sternotherus odoratus), and mud turtles (Kinosternon subrubrum)","volume":"65","year":"1992","journal-title":"Physiol Biochem Zool"},{"key":"key\n\t\t\t\t20170923054612_msx167-B63","doi-asserted-by":"crossref","first-page":"840","DOI":"10.1111\/j.1365-2435.2008.01431.x","article-title":"Effect of water depth, velocity and temperature on the surfacing frequency of the bimodally respiring turtle Elseya albagula","volume":"22","year":"2008","journal-title":"Funct Ecol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B64","doi-asserted-by":"crossref","first-page":"18","DOI":"10.1093\/oxfordjournals.molbev.a004233","article-title":"Pervasive adaptive evolution in mammalian fertilization proteins","volume":"20","year":"2003","journal-title":"Mol Biol Evol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B65","doi-asserted-by":"crossref","first-page":"2725","DOI":"10.1093\/molbev\/mst197","article-title":"MEGA6: molecular evolutionary genetics analysis version 6.0","volume":"30","year":"2013","journal-title":"Mol Biol Evol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B66","doi-asserted-by":"crossref","first-page":"4673","DOI":"10.1093\/nar\/22.22.4673","article-title":"CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice","volume":"22","year":"1994","journal-title":"Nucleic Acids Res"},{"key":"key\n\t\t\t\t20170923054612_msx167-B67","doi-asserted-by":"crossref","first-page":"620","DOI":"10.1086\/physzool.57.6.30155988","article-title":"The comparative physiology of diving in North American freshwater turtles. I. Submergence tolerance, gas exchange and acid\u2013base balance","volume":"57","year":"1984","journal-title":"Physiol Zool"},{"key":"key\n\t\t\t\t20170923054612_msx167-B68","doi-asserted-by":"crossref","first-page":"97","DOI":"10.1146\/annurev-genet-111212-133526","article-title":"Detecting natural selection in genomic data","volume":"47","year":"2013","journal-title":"Ann Rev Genet"},{"key":"key\n\t\t\t\t20170923054612_msx167-B69","doi-asserted-by":"crossref","first-page":"1297","DOI":"10.1093\/molbev\/msr311","article-title":"An improved likelihood ratio test for detecting site-specific functional divergence among clades of protein-coding genes","volume":"29","year":"2012","journal-title":"Mol Biol Evol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B70","doi-asserted-by":"crossref","first-page":"433","DOI":"10.1093\/gbe\/evu025","article-title":"Polar bears exhibit genome-wide signatures of bioenergetic adaptation to life in the arctic environment","volume":"6","year":"2014","journal-title":"Genome Biol Evol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B71","doi-asserted-by":"crossref","first-page":"33","DOI":"10.1002\/jmor.1051960105","article-title":"The buccopharyngeal mucosa of the turtles (Testudines)","volume":"196","year":"1988","journal-title":"J Morphol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B72","doi-asserted-by":"crossref","first-page":"1598","DOI":"10.1016\/j.cell.2016.11.012","article-title":"Structure of mammalian respiratory supercomplex I1III2IV1","volume":"167","year":"2016","journal-title":"Cell"},{"key":"key\n\t\t\t\t20170923054612_msx167-B73","first-page":"486","volume-title":"Biology of turtles: from structures to strategies of life.","year":"2008"},{"key":"key\n\t\t\t\t20170923054612_msx167-B74","doi-asserted-by":"crossref","first-page":"1278","DOI":"10.1016\/j.bbabio.2012.11.008","article-title":"Structural analysis of cytochrome bc1 complexes: implications to the mechanism of function","volume":"1827","year":"2013","journal-title":"Biochim Biophys Acta"},{"key":"key\n\t\t\t\t20170923054612_msx167-B75","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/S1055-7903(02)00326-3","article-title":"An index of substitution saturation and its application","volume":"26","year":"2003","journal-title":"Mol Phylogenet Evol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B76","doi-asserted-by":"crossref","first-page":"1720","DOI":"10.1093\/molbev\/mst064","article-title":"DAMBE5: a comprehensive software package for data analysis in molecular biology and evolution","volume":"30","year":"2013","journal-title":"Mol Biol Evol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B77","doi-asserted-by":"crossref","first-page":"431","DOI":"10.1093\/genetics\/155.1.431","article-title":"Codon-substitution models for heterogeneous selection pressure at amino acid sites","volume":"155","year":"2000","journal-title":"Genetics"},{"key":"key\n\t\t\t\t20170923054612_msx167-B78","doi-asserted-by":"crossref","first-page":"1107","DOI":"10.1093\/molbev\/msi097","article-title":"Bayes empirical bayes inference of amino acid sites under positive selection","volume":"22","year":"2005","journal-title":"Mol Biol Evol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B79","doi-asserted-by":"crossref","first-page":"1586","DOI":"10.1093\/molbev\/msm088","article-title":"PAML 4: phylogenetic analysis by maximum likelihood","volume":"24","year":"2007","journal-title":"Mol Biol Evol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B80","doi-asserted-by":"crossref","first-page":"173.","DOI":"10.1186\/s12862-015-0453-7","article-title":"Heterogeneous natural selection on oxidative phosphorylation genes among fishes with extreme high and low aerobic performance","volume":"15","year":"2015","journal-title":"BMC Evol Biol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B81","doi-asserted-by":"crossref","first-page":"2472","DOI":"10.1093\/molbev\/msi237","article-title":"Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level","volume":"22","year":"2005","journal-title":"Mol Biol Evol"},{"key":"key\n\t\t\t\t20170923054612_msx167-B82","doi-asserted-by":"crossref","first-page":"e10180.","DOI":"10.7554\/eLife.10180","article-title":"Structure and conformational states of the bovine mitochondrial ATP synthase by cryo-EM","volume":"4","year":"2015","journal-title":"eLife"}],"container-title":["Molecular Biology and Evolution"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/mbe\/article-pdf\/34\/10\/2522\/20129956\/msx167.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,6,24]],"date-time":"2024-06-24T10:08:47Z","timestamp":1719223727000},"score":1,"resource":{"primary":{"URL":"http:\/\/academic.oup.com\/mbe\/article\/34\/10\/2522\/3855186\/Adaptive-Patterns-of-Mitogenome-Evolution-Are"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2017,6,6]]},"references-count":81,"journal-issue":{"issue":"10","published-online":{"date-parts":[[2017,6,6]]},"published-print":{"date-parts":[[2017,10]]}},"URL":"https:\/\/doi.org\/10.1093\/molbev\/msx167","relation":{},"ISSN":["0737-4038","1537-1719"],"issn-type":[{"value":"0737-4038","type":"print"},{"value":"1537-1719","type":"electronic"}],"subject":[],"published":{"date-parts":[[2017,6,6]]}}}